README to know the order to call the code for Particle Tracking
- - you need both matlab and python
-- this works for the 2D-case

The code has been written by Martin P. Luethi (martin.luethi@geo.uzh.ch)

For questions contact Gwendolyn Leysinger Vieli (gwendolyn.leysinger@geo.uzh.ch)

In Matlab:
1) run the BASISM code - gives you outputfiles
2) run 'gg_plottimedep_3d_output_ParticleTrack.m' (in same directory as the BASISM model) - produces velocity files and contour - copy velocity files into directory on Python code level

In Python:
3) run 'transform_velofiles_intonpy.py' - transforms velocity files (from BASISM) into .npy files
4) run 'track_velo.py' - gives the points to track
5) run 'track_velo_contour.py' - makes contours
6) run 'transform_velofiles.py' - generates nc (netcdf) files using points (contours already done in code)

In Matlab:
7) run 'readplotncdataTrack_paperplot2D.m' to compare results between BASISM and Particle Tracking (in same directory as python code)


