#!/bin/sh
#SBATCH -J mm39_dsmCherry_P2A_CRE_EYFP
#SBATCH -n 1
#SBATCH -c 12
#SBATCH --mem 64G
#SBATCH -p shared-cpu
#SBATCH -t 06:00:00

module load GCC/8.3.0
module load OpenMPI/3.1.4
module load STAR/2.7.2b #version of genome built important for mapping, different modules clash

STAR --runThreadN 12 --runMode genomeGenerate --genomeDir /home/users/d/darbellf/live/genomes/mm39_dsmCherry_P2A_CRE_EYFP/STAR --genomeFastaFiles /home/users/d/darbellf/live/genomes/mm39_dsmCherry_P2A_CRE_EYFP/mm39_dsmCherry_P2A_CRE_EYFP.fa

# Need to create manually a STAR folder