#!/bin/sh

#SBATCH -J indexing
#SBATCH --nodes=1
#SBATCH --ntasks=1
#SBATCH --cpus-per-task=12
#SBATCH -p shared-cpu
#SBATCH -t 03:00:00
#SBATCH --mem-per-cpu=8000

module load GCC/8.3.0
module load Bowtie2/2.3.5.1

srun bowtie2-build /home/users/d/darbellf/live/genomes/mm39_dsmCherry_P2A_CRE_EYFP/mm39_dsmCherry_P2A_CRE_EYFP.fa /home/users/d/darbellf/live/genomes/mm39_dsmCherry_P2A_CRE_EYFP/bowtie2/bowtie2

# Need to create manually a bowtie2 folder