{
  "name": "SeMRA Anatomy Mappings Database",
  "description": "Supports the analysis of the landscape of anatomy nomenclature resources.",
  "creators": [
    {
      "name": "Charles Tapley Hoyt",
      "orcid": "0000-0003-4423-4370"
    }
  ],
  "inputs": [
    {
      "source": "biomappings"
    },
    {
      "source": "gilda"
    },
    {
      "source": "pyobo",
      "prefix": "uberon",
      "confidence": 0.99
    },
    {
      "source": "pyobo",
      "prefix": "bto",
      "confidence": 0.99
    },
    {
      "source": "pyobo",
      "prefix": "caro",
      "confidence": 0.99
    },
    {
      "source": "pyobo",
      "prefix": "mesh",
      "confidence": 0.99
    },
    {
      "source": "pyobo",
      "prefix": "ncit",
      "confidence": 0.99
    },
    {
      "source": "pyobo",
      "prefix": "umls",
      "confidence": 0.99
    }
  ],
  "priority": [
    "uberon",
    "mesh",
    "bto",
    "caro",
    "ncit",
    "umls"
  ],
  "mutations": [
    {
      "source": "uberon",
      "confidence": 0.8
    },
    {
      "source": "bto",
      "confidence": 0.65
    },
    {
      "source": "caro",
      "confidence": 0.8
    },
    {
      "source": "ncit",
      "confidence": 0.7
    },
    {
      "source": "umls",
      "confidence": 0.7
    }
  ],
  "subsets": {
    "mesh": [
      "mesh:D001829",
      "mesh:D009141",
      "mesh:D004064",
      "mesh:D012137",
      "mesh:D014566",
      "mesh:D004703",
      "mesh:D002319",
      "mesh:D009420",
      "mesh:D012679",
      "mesh:D014024",
      "mesh:D005441",
      "mesh:D000825",
      "mesh:D013284",
      "mesh:D006424",
      "mesh:D004628",
      "mesh:D034582",
      "mesh:D018514",
      "mesh:D056229",
      "mesh:D056226",
      "mesh:D056224"
    ],
    "ncit": [
      "ncit:C12219"
    ],
    "umls": [
      "sty:T024",
      "sty:T017"
    ]
  },
  "keep_prefixes": [
    "uberon",
    "mesh",
    "bto",
    "caro",
    "ncit",
    "umls"
  ],
  "remove_imprecise": false,
  "raw_pickle_path": "/Users/cthoyt/.data/semra/case-studies/anatomy/raw.pkl",
  "raw_sssom_path": "/Users/cthoyt/.data/semra/case-studies/anatomy/raw.sssom.tsv",
  "processed_pickle_path": "/Users/cthoyt/.data/semra/case-studies/anatomy/processed.pkl",
  "processed_sssom_path": "/Users/cthoyt/.data/semra/case-studies/anatomy/processed.sssom.tsv",
  "processed_neo4j_path": "/Users/cthoyt/.data/semra/case-studies/anatomy/neo4j",
  "processed_neo4j_name": "semra-anatomy",
  "priority_pickle_path": "/Users/cthoyt/.data/semra/case-studies/anatomy/priority.pkl",
  "priority_sssom_path": "/Users/cthoyt/.data/semra/case-studies/anatomy/priority.sssom.tsv",
  "add_labels": false,
  "configuration_path": "/Users/cthoyt/.data/semra/case-studies/anatomy/configuration.json"
}