masahiro-nagano/Murase_2024_Nature-v1.0.2.zip
masahiro-nagano-Murase_2024_Nature-e47616f
.DS_Store
8.2 kB
README.md
317 Bytes
R_package_version.txt
3.9 kB
edf12_a.R
3.5 kB
edf12_b.R
3.0 kB
edf12_c.R
6.8 kB
edf12_d.R
6.5 kB
edf12_e.R
2.0 kB
edf12_f.R
4.7 kB
edf12_g.R
4.9 kB
f5_b.R
1.4 kB
f5_c.R
3.4 kB
f5_d.R
7.1 kB
f5_e.R
6.6 kB
f5_f.R
4.1 kB
f5_g.R
2.0 kB
f5_h.R
4.7 kB
f5_i.R
4.8 kB
source
.DS_Store
10.2 kB
231202_core_ERgene_early.txt
186 Bytes
231202_core_ERgene_late.txt
126 Bytes
GRCh38p12_wo_pseudo_v2_chrxym_PARN_promoter_900us_400ds_hcp.bed
1.7 MB
TET1_TSS_anno_900_400.txt
1.0 MB
c12.enhancer.diff.rda
234.9 kB
c12.promoter.diff.rda
312.6 kB
c12_KO1_methyl_OpenSites.bedGraph
5.9 MB
c12_KO1_methyl_Prom.bedGraph
1.9 MB
c12_KO2_methyl_OpenSites.bedGraph
5.9 MB
c12_KO2_methyl_Prom.bedGraph
1.9 MB
c12_WT_methyl_OpenSites.bedGraph
5.9 MB
c12_WT_methyl_Prom.bedGraph
1.9 MB
c42_KO1_methyl_OpenSites.bedGraph
5.9 MB
c42_KO1_methyl_Prom.bedGraph
1.9 MB
c42_KO2_methyl_OpenSites.bedGraph
5.9 MB
c42_KO2_methyl_Prom.bedGraph
1.9 MB
c42_WT_methyl_OpenSites.bedGraph
5.9 MB
c42_WT_methyl_Prom.bedGraph
1.9 MB
diff.ex.cat.rda
421.4 kB
ensembl
CDS.bed
5.0 MB
CGI.bed
538.6 kB
CTCF_binding_site.bed
4.2 MB
C_gene_segment.bed
497 Bytes
D_gene_segment.bed
1.0 kB
J_gene_segment.bed
2.3 kB
TF_binding_site.bed
733.1 kB
V_gene_segment.bed
6.1 kB
enhancer.bed
3.2 MB
exon.bed
7.7 MB
five_prime_UTR.bed
1.3 MB
gene.bed
401.8 kB
intergenic.bed
406.6 kB
intron.bed
5.7 MB
lnc_RNA.bed
703.2 kB
mRNA.bed
388.7 kB
miRNA.bed
43.7 kB
ncRNA.bed
53.5 kB
ncRNA_gene.bed
473.2 kB
open_chromatin_region.bed
2.3 MB
promoter.bed
839.6 kB
promoter_flanking_region.bed
3.4 MB
pseudogene.bed
348.0 kB
pseudogenic_transcript.bed
356.1 kB
rRNA.bed
1.5 kB
scRNA.bed
1.1 kB
snRNA.bed
45.9 kB
snoRNA.bed
22.2 kB
tRNA.bed
279 Bytes
three_prime_UTR.bed
1.7 MB
unconfirmed_transcript.bed
27.1 kB
vaultRNA_primary_transcript.bed
50 Bytes
expression_T1KO_DEG_list2284genes_20230221.txt
1.1 MB
genomewide_2kb_GRCh38_CpG_868_T1KO_KO1_c12_GRCh38p12chrxymPARN.bed
51.0 MB
genomewide_2kb_GRCh38_CpG_868_T1KO_KO1_c42_GRCh38p12chrxymPARN.bed
51.0 MB
genomewide_2kb_GRCh38_CpG_868_T1KO_KO2_c12_GRCh38p12chrxymPARN.bed
51.0 MB
genomewide_2kb_GRCh38_CpG_868_T1KO_KO2_c42_GRCh38p12chrxymPARN.bed
51.0 MB
genomewide_2kb_GRCh38_CpG_868_T1KO_WT_c12_GRCh38p12chrxymPARN.bed
51.0 MB
genomewide_2kb_GRCh38_CpG_868_T1KO_WT_c42_GRCh38p12chrxymPARN.bed
51.0 MB
hg38.chrom.sizes
4.5 kB
hg38_imprint_DMRs_Court_liftover_CpG_868_T1KO_KO1_c12_GRCh38p12chrxymPARN.bed
4.9 kB
hg38_imprint_DMRs_Court_liftover_CpG_868_T1KO_KO1_c42_GRCh38p12chrxymPARN.bed
4.9 kB
hg38_imprint_DMRs_Court_liftover_CpG_868_T1KO_KO2_c12_GRCh38p12chrxymPARN.bed
4.9 kB
hg38_imprint_DMRs_Court_liftover_CpG_868_T1KO_KO2_c42_GRCh38p12chrxymPARN.bed
4.9 kB
hg38_imprint_DMRs_Court_liftover_CpG_868_T1KO_parent_c12_GRCh38p12chrxymPARN.bed
4.9 kB
hg38_imprint_DMRs_Court_liftover_CpG_868_T1KO_parent_c42_GRCh38p12chrxymPARN.bed
4.9 kB
human_atac.clust.v2.csv.zip
51.0 MB
peaks2
.DS_Store
6.1 kB
DE_ATAC_1_uni_peaks.narrowPeak
14.6 MB
DE_ATAC_2_uni_peaks.narrowPeak
20.7 MB
ME_ATAC_1_uni_peaks.narrowPeak
13.1 MB
ME_ATAC_2_uni_peaks.narrowPeak
13.4 MB
PreME_ATAC_1_uni_peaks.narrowPeak
12.0 MB
PreME_ATAC_2_uni_peaks.narrowPeak
16.3 MB
hESC_ATAC_1_uni_peaks.narrowPeak
12.8 MB
hESC_ATAC_2_uni_peaks.narrowPeak
22.8 MB
hPGC_ATAC_1_uni_peaks.narrowPeak
7.6 MB
hPGC_ATAC_2_uni_peaks.narrowPeak
7.2 MB
hd2PGCLC_ATAC_1_uni_peaks.narrowPeak
10.5 MB
hd2PGCLC_ATAC_2_uni_peaks.narrowPeak
16.1 MB
hd4PGCLC_ATAC_1_uni_peaks.narrowPeak
14.4 MB
hd4PGCLC_ATAC_2_uni_peaks.narrowPeak
15.2 MB
promoter_classification.tsv
608.8 kB