Published April 18, 2024
| Version 0.10.0
Workflow
Open
sanger-tol/genomeassembly: v0.10.0 - Hideous Zippleback
-
1.
Wellcome Sanger Institute
Description
Enhancements & fixes
- OATK module is added into the ORGANELLES subworkflow
- ORGANELLES subworkflow is now called once in the main workflow and runs MITOHIFI in read and assembly mode along with OATK
- ORGANELLES module is now tested in github CI
- NCBI API secret introduced to run MITOHIFI_FINDMITOREFERENCE module
- hifiasm haplotigs are not purged anymore
- Longranger container version is updated
Software dependencies
Note, since the pipeline is using Nextflow DSL2, each process will be run with its own Biocontainer. This means that on occasion it is entirely possible for the pipeline to be using different versions of the same tool. However, the overall software dependency changes compared to the last release have been listed below for reference.
| Dependency | Old version | New version |
|---|---|---|
| mitohifi | 3.0.0 | 3.1.1 |
| oatk | 1.0 |
NB: Dependency has been added if just the new version information is present.
Notes
If you use this software, please cite it using the metadata from this file.
Files
sanger-tol/genomeassembly-0.10.0.zip
Files
(32.1 MB)
| Name | Size | Download all |
|---|---|---|
|
md5:ed39843e83c96f39cf4e0d6b58e6b260
|
32.1 MB | Preview Download |
Additional details
Related works
- Is supplement to
- Software: https://github.com/sanger-tol/genomeassembly/tree/0.10.0 (URL)
Software
- Repository URL
- https://github.com/sanger-tol/genomeassembly
- Programming language
- Nextflow
- Development Status
- Active