Taxon sampling and inferred community phylogenies: R replication code and data.

1 ) R code for simulating community phylogenies:

community_simulations_creation.R

2) R code for creating and comparing phylogenetic diversity metrics:

simulated_metric_calculation_and_comparison.R

empirical_metric_calculation_and_comparison.R

3) R code and data for statistical analyses:

simulated_data_analysis.R

empirical_data_analysis.R

simulated_interval_individual_lme_data.csv

simulated_summary_interval_individual_lme_data.csv

empirical_interval_individual_lme_data.csv

empirical_summary_interval_lme_data.csv