neurolib-dev/neurolib-v0.7.0.zip
neurolib-dev-neurolib-6be0d37
.github
workflows
ci.yml
1.6 kB
documentation.yml
1.7 kB
test-notebooks.yml
887 Bytes
.gitignore
1.9 kB
CHANGELOG.md
5.2 kB
CONTRIBUTING.md
5.8 kB
LICENSE
1.1 kB
MANIFEST.in
270 Bytes
README.md
20.2 kB
codecov.yml
353 Bytes
docs
README.md
12 Bytes
contributing.md
18 Bytes
examples
11 Bytes
exploration
boxsearch.md
68 Bytes
models
model.md
736 Bytes
parameters.md
4.0 kB
optimization
evolution.md
64 Bytes
utils
dataset.md
46 Bytes
functions.md
41 Bytes
parameterspace.md
66 Bytes
signal.md
42 Bytes
stimulus.md
39 Bytes
examples
data
AAL2_atlas_data
AAL2.nii
1.8 MB
AAL2.xml
8.1 kB
rs-meg.nc
4.6 MB
example-0-aln-minimal.ipynb
633.0 kB
example-0.1-hopf-minimal.ipynb
235.3 kB
example-0.2-basic_analysis.ipynb
506.3 kB
example-0.3-fhn-minimal.ipynb
175.8 kB
example-0.4-wc-minimal.ipynb
193.1 kB
example-0.5-kuramoto.ipynb
518.4 kB
example-0.6-external-stimulus.ipynb
1.1 MB
example-0.7-custom-model.ipynb
54.9 kB
example-0.8-leadfield-matrix.ipynb
185.8 kB
example-1-aln-parameter-exploration.ipynb
16.5 kB
example-1.1-custom-parameter-exploration.ipynb
25.2 kB
example-1.2-brain-network-exploration.ipynb
211.6 kB
example-1.2.1-brain-exploration-postprocessing.ipynb
54.2 kB
example-1.3-aln-bifurcation-diagram.ipynb
181.6 kB
example-2-evolutionary-optimization-minimal.ipynb
4.2 kB
example-2.0.1-save-and-load-evolution.ipynb
84.9 kB
example-2.1-evolutionary-optimization-aln.ipynb
488.3 kB
example-2.2-evolution-brain-network-aln-resting-state-fit.ipynb
713.0 kB
example-3-meg-functional-connectivity.ipynb
818.2 kB
example-4-multimodel-intro.ipynb
206.9 kB
example-4.1-multimodel-custom-model.ipynb
289.4 kB
example-4.2-multimodel-backends-and-optimization.ipynb
318.3 kB
example-5.1-oc-phenomenological-model-deterministic.ipynb
1.2 MB
example-5.2-oc-wc-model-deterministic.ipynb
1.1 MB
example-5.3-oc-wc-model-noisy.ipynb
974.3 kB
example-5.4-oc-aln-model-deterministic.ipynb
1.3 MB
mkdocs.yml
847 Bytes
neurolib
__init__.py
0 Bytes
control
__init__.py
0 Bytes
optimal_control
__init__.py
0 Bytes
cost_functions.py
8.8 kB
oc.py
43.0 kB
oc_aln
__init__.py
26 Bytes
oc_aln.py
14.2 kB
oc_fhn
__init__.py
26 Bytes
oc_fhn.py
3.7 kB
oc_hopf
__init__.py
28 Bytes
oc_hopf.py
3.7 kB
oc_wc
__init__.py
24 Bytes
oc_wc.py
4.5 kB
data
datasets
gw
subjects
NAP_001
functional
BOLD_rsfMRI.mat
231.8 kB
structural
DTI_CM.mat
20.5 kB
DTI_LEN.mat
56.5 kB
NAP_002
functional
BOLD_rsfMRI.mat
230.1 kB
structural
DTI_CM.mat
21.0 kB
DTI_LEN.mat
56.9 kB
NAP_007
functional
BOLD_rsfMRI.mat
230.2 kB
structural
DTI_CM.mat
20.8 kB
DTI_LEN.mat
56.4 kB
NAP_009
functional
BOLD_rsfMRI.mat
230.1 kB
structural
DTI_CM.mat
20.9 kB
DTI_LEN.mat
56.6 kB
NAP_013
functional
BOLD_rsfMRI.mat
234.1 kB
structural
DTI_CM.mat
21.8 kB
DTI_LEN.mat
59.1 kB
hcp
subjects
101309
functional
TC_rsfMRI_REST1_LR.mat
770.7 kB
structural
DTI_CM.mat
28.3 kB
DTI_LEN.mat
50.7 kB
nvoxel.txt
1.7 kB
waytotal.txt
950 Bytes
102311
functional
TC_rsfMRI_REST1_LR.mat
768.2 kB
structural
DTI_CM.mat
28.1 kB
DTI_LEN.mat
50.7 kB
nvoxel.txt
1.7 kB
waytotal.txt
951 Bytes
102816
functional
TC_rsfMRI_REST1_LR.mat
778.8 kB
structural
DTI_CM.mat
28.7 kB
DTI_LEN.mat
50.9 kB
nvoxel.txt
1.7 kB
waytotal.txt
952 Bytes
131217
functional
TC_rsfMRI_REST1_LR.mat
775.5 kB
structural
DTI_CM.mat
28.2 kB
DTI_LEN.mat
50.8 kB
nvoxel.txt
1.7 kB
waytotal.txt
947 Bytes
211619
functional
TC_rsfMRI_REST1_LR.mat
772.8 kB
structural
DTI_CM.mat
28.4 kB
DTI_LEN.mat
50.7 kB
nvoxel.txt
1.7 kB
waytotal.txt
951 Bytes
213522
functional
TC_rsfMRI_REST1_LR.mat
772.5 kB
structural
DTI_CM.mat
28.4 kB
DTI_LEN.mat
50.8 kB
nvoxel.txt
1.7 kB
waytotal.txt
950 Bytes
377451
functional
TC_rsfMRI_REST1_LR.mat
777.2 kB
structural
DTI_CM.mat
28.2 kB
DTI_LEN.mat
50.8 kB
nvoxel.txt
1.7 kB
waytotal.txt
950 Bytes
models
__init__.py
0 Bytes
aln
__init__.py
28 Bytes
aln-precalc
precompute_quantities
calculate_quantities_cascade.py
6.2 kB
methods_cascade.py
29.7 kB
params.py
8.3 kB
quantities_cascade.h5
1.2 MB
loadDefaultParams.py
8.9 kB
model.py
2.6 kB
timeIntegration.py
69.6 kB
bold
__init__.py
71 Bytes
model.py
2.4 kB
timeIntegration.py
5.2 kB
fhn
__init__.py
28 Bytes
loadDefaultParams.py
3.2 kB
model.py
1.1 kB
timeIntegration.py
13.0 kB
hopf
__init__.py
29 Bytes
loadDefaultParams.py
3.0 kB
model.py
1.1 kB
timeIntegration.py
12.5 kB
kuramoto
__init__.py
33 Bytes
loadDefaultParams.py
1.9 kB
model.py
997 Bytes
timeIntegration.py
4.5 kB
model.py
26.0 kB
multimodel
__init__.py
421 Bytes
builder
__init__.py
464 Bytes
aln.py
35.8 kB
base
__init__.py
0 Bytes
backend.py
24.3 kB
constants.py
323 Bytes
network.py
37.4 kB
neural_mass.py
8.6 kB
params.py
2.4 kB
fitzhugh_nagumo.py
5.0 kB
hopf.py
5.4 kB
thalamus.py
13.2 kB
wilson_cowan.py
8.4 kB
wong_wang.py
15.2 kB
model.py
8.7 kB
thalamus
__init__.py
37 Bytes
loadDefaultParams.py
3.9 kB
model.py
1.9 kB
timeIntegration.py
9.1 kB
wc
__init__.py
27 Bytes
loadDefaultParams.py
3.4 kB
model.py
1.1 kB
timeIntegration.py
19.7 kB
ww
__init__.py
27 Bytes
loadDefaultParams.py
3.6 kB
model.py
1.8 kB
timeIntegration.py
8.4 kB
optimize
__init__.py
0 Bytes
evolution
__init__.py
33 Bytes
deapUtils.py
13.6 kB
evolution.py
41.6 kB
evolutionaryUtils.py
9.9 kB
exploration
__init__.py
35 Bytes
exploration.py
26.9 kB
explorationUtils.py
18.1 kB
utils
__init__.py
0 Bytes
atlases.py
21.4 kB
collections.py
7.3 kB
devutils.py
13.7 kB
functions.py
11.6 kB
leadfield.py
25.0 kB
loadData.py
16.7 kB
model_utils.py
1.9 kB
parameterSpace.py
10.0 kB
paths.py
244 Bytes
plot_oc.py
5.7 kB
pypetUtils.py
3.0 kB
pypet_logging.ini
1.1 kB
saver.py
2.5 kB
signal.py
27.7 kB
stimulus.py
19.6 kB
requirements.txt
85 Bytes
resources
adex.png
622.9 kB
aln.png
118.7 kB
brain_slow_waves_small.gif
155.1 kB
element_logo.png
145.9 kB
evolution_animated.gif
65.7 kB
evolution_minimal.png
28.7 kB
evolution_tree.png
293.6 kB
evolutionary-algorithm.png
136.4 kB
exploration_aln.png
9.2 kB
gw_data.png
92.9 kB
gw_simulated.png
53.6 kB
icon_block.png
141.1 kB
pipeline.jpg
172.1 kB
readme_header.png
46.6 kB
single_timeseries.png
9.6 kB
setup.py
932 Bytes
tests
control
optimal_control
test_oc.py
10.2 kB
test_oc_aln.py
16.0 kB
test_oc_cost_functions.py
9.8 kB
test_oc_fhn.py
15.4 kB
test_oc_fhn_noisy.py
5.9 kB
test_oc_hopf.py
5.0 kB
test_oc_utils.py
5.6 kB
test_oc_wc.py
7.3 kB
multimodel
base
test_backend.py
13.8 kB
test_network.py
18.9 kB
test_neural_mass.py
3.6 kB
test_params.py
1.7 kB
test_aln.py
13.4 kB
test_fitzhugh_nagumo.py
7.5 kB
test_hopf.py
7.5 kB
test_thalamus.py
6.0 kB
test_wilson_cowan.py
9.1 kB
test_wong_wang.py
10.5 kB
test_autochunk.py
5.2 kB
test_collections.py
4.9 kB
test_datasets.py
831 Bytes
test_evolution.py
7.7 kB
test_evolutionUtils.py
2.8 kB
test_exploration.py
10.4 kB
test_explorationUtils.py
3.1 kB
test_functions.py
2.1 kB
test_imports.py
1.2 kB
test_models.py
12.4 kB
test_parameterspace.py
2.8 kB
test_signal.py
15.5 kB
test_stimulus.py
25.9 kB
test_subsampling.py
3.8 kB