Published February 21, 2024
| Version 2.5.1
Software
Open
nf-core/eager: [2.5.1] - Bopfingen (Patch) - 2024-02-21
Creators
- James A. Fellows Yates1
- Alexander Peltzer2
- Thiseas C. Lamnidis3
- Maxime Borry4
- Zandra Fagernäs
- Ido Bar5
- Aida Andrades Valtueña3
- Alexandre Gilardet6
- nf-core bot
- Maxime U Garcia7
- Evan Floden8
- Patrick Hüther9
- Phil Ewels10
- Charles Plessy
- Fabian Lehmann11
- Gisela Gabernet
- sc13-bioinf
- Åshild J. Vågene
- Harshil Patel12
- Olga Botvinnik13
- Selina Carlhoff14
- Alex Hübner
- marcel-keller
- 1. HKI Jena, MPI-EVA Leipzig
- 2. Boehringer Ingelheim
- 3. Max Planck Institute for Evolutionary Anthropology
- 4. Max Planck institute for Evolutionary Anthropology
- 5. Griffith University
- 6. Centre for Palaeogenetics
- 7. @seqeralabs | Stockholm
- 8. Seqera Labs and @nextflow-io
- 9. @imbforge
- 10. @seqeralabs
- 11. Humboldt University of Berlin
- 12. Seqera Labs
- 13. @BridgeBioAnalytics
- 14. MPI-EVA
Description
[2.5.1] - 2024-02-21
Added
- #1037 Added an option to deactivate the
-sorted
option of bedtools coverage, in case the feature file is not sorted the same way as the fasta file, albeit with the caveat this will be very slow. (♥ Thanks to @IdoBar for reporting, and contributing.)
Fixed
- #1048
--vcf2genome_outfile
parameter now gets prefixed by the sample_name and suffixed with.fasta
(i.e.<sample_name>_<vcf2genome_outfile>.fasta
). This ensures we avoid overwriting the output fasta of one sample with that of another when the option is provided. (♥ Thanks to @MeriamOs for reporting.) - #1047 Changed the row some statistics were reported in the General Stats table. The File name collision fixed in 2.5.0 (see #1017) caused these statistics to be reported in the wrong row due to an added suffix.
- #1051 An error is now thrown if input BAM files end in
.unmapped.bam
, as this breaks the bam filtering process and empties the bam files in the process. (♥ Thanks to @PCQuilis for reporting.)
Dependencies
Deprecated
Files
nf-core/eager-2.5.1.zip
Files
(17.9 MB)
Name | Size | Download all |
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md5:1625bc2b9ad409284e2870a8198610d3
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Additional details
Related works
- Is supplement to
- Software: https://github.com/nf-core/eager/tree/2.5.1 (URL)