Preview

mrvollger-fire-figures-3a1c1be
- .gitignore
  
  101 Bytes
- README.md
  
  15 Bytes
- Rscripts
  - COLO-avalible-template.Rmd
    
    10.3 kB
  - DNase-FIRE-ven.Rmd
    
    5.4 kB
  - FIRE-score-vs-FDR.Rmd
    
    1.8 kB
  - Fire-peak-df.R
    
    5.4 kB
  - Fire-peak-size.Rmd
    
    3.5 kB
  - SDs-FIRE.Rmd
    
    992 Bytes
  - differential-accesibility-hotspots.Rmd
    
    21.9 kB
  - genetic-variants-in-hap-peaks.Rmd
    
    3.1 kB
  - hap-diffs.Rmd
    
    4.5 kB
  - n-fire-per-dnase.Rmd
    
    4.0 kB
  - peaks-vs-percent.Rmd
    
    17.5 kB
  - sample-intersections.Rmd
    
    2.0 kB
  - test-driver-5mC.Rmd
    
    3.7 kB
  - unused-or-for-other-papers
    - Figures.Rmd
      
      5.0 kB
    - UDN-translocation.Rmd
      
      5.2 kB
    - misc.Rmd
      
      1.4 kB
  - utils.R
    
    17.7 kB
- data
  - 10X_GM12878_peaks_max_cov.bed.gz
    
    2.1 MB
  - CTCF_peak_ENCFF356LIU.bed.gz
    
    666.1 kB
  - CTCF_peak_ENCFF960ZGP.bed.gz
    
    705.6 kB
  - GRCh38-alt-locations.bed.gz
    
    4.5 kB
  - SDs.bed.gz
    
    3.9 MB
  - SDs.merged.hg38.bed.gz
    
    70.1 kB
  - encode_blacklist_ENCFF356LFX.bed.gz
    
    8.2 kB
  - gencode.v42.annotation_TSS.gff3.gz
    
    10.9 MB
  - lcl_dmr_coordinates_Akbari.bed.gz
    
    2.1 kB
- scripts
  - compare_hap_tables.sh
    
    1.3 kB
  - dnase_vs_percent_fire.sh
    
    268 Bytes
  - fire-correlations.sh
    
    1.1 kB
  - per-peak-averages-in-10-bp-windows.sh
    
    808 Bytes
  - percent_in_peaks.sh
    
    1.2 kB

mrvollger/fire-figures-0.0.0.zip