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<title>A Review of Biotic Interactions and Taxon Names Found in globalbioticinteractions/ferreira2023</title>
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<header id="title-block-header">
<h1 class="title">A Review of Biotic Interactions and Taxon Names Found
in globalbioticinteractions/ferreira2023</h1>
<p class="author">by Nomer and Elton, two naive review bots</p>
<p class="author">review@globalbioticinteractions.org</p>
<p class="author">https://globalbioticinteractions.org/contribute</p>
<p class="author">https://github.com/globalbioticinteractions/ferreira2023/issues</p>
<p class="date">2024-02-10</p>
<div class="abstract">
<div class="abstract-title">Abstract</div>
<p>Life on Earth is sustained by complex interactions between organisms
and their environment. These biotic interactions can be captured in
datasets and published digitally. We describe a review process of such
an openly accessible digital interactions dataset of known origin, and
discuss their outcome. The dataset under review (aka
globalbioticinteractions/ferreira2023) has size 103KiB and contains 13
interactions with 1 unique types of associations (e.g.,
flowersVisitedBy) between 1 primary taxa (e.g., Citrus) and 10
associated taxa (e.g., Diptera). The report includes detailed summaries
of interactions data as well as a taxonomic review from multiple
perspectives.</p>
</div>
</header>
<nav id="TOC" role="doc-toc">
<ul>
<li><a href="#introduction" id="toc-introduction">Introduction</a>
<ul>
<li><a href="#data-review" id="toc-data-review">Data Review</a></li>
</ul></li>
<li><a href="#methods" id="toc-methods">Methods</a></li>
<li><a href="#results" id="toc-results">Results</a>
<ul>
<li><a href="#biotic-interactions" id="toc-biotic-interactions">Biotic
Interactions</a>
<ul>
<li><a href="#interaction-networks" id="toc-interaction-networks">Interaction Networks</a></li>
</ul></li>
<li><a href="#taxonomic-alignment" id="toc-taxonomic-alignment">Taxonomic Alignment</a></li>
<li><a href="#additional-reviews" id="toc-additional-reviews">Additional
Reviews</a></li>
<li><a href="#globi-review-badge" id="toc-globi-review-badge">GloBI
Review Badge</a></li>
<li><a href="#globi-index-badge" id="toc-globi-index-badge">GloBI Index
Badge</a></li>
</ul></li>
<li><a href="#discussion" id="toc-discussion">Discussion</a></li>
<li><a href="#acknowledgements" id="toc-acknowledgements">Acknowledgements</a></li>
<li><a href="#bibliography" id="toc-bibliography">References</a></li>
</ul>
</nav>
<h1 id="introduction">Introduction</h1>
<h2 id="data-review">Data Review</h2>
<p>Data review can be a time consuming process, especially when done
manually. This review report aims to help facilitate data review of
species interaction claims made in datasets registered with Global
Biotic Interactions <span class="citation" data-cites="Poelen_2014">(Poelen, Simons, and Mungall 2014)</span>. The
review includes summary statistics of, and observations about, the
dataset under review:</p>
<blockquote>
<p>Orange (Citrus sinensis L. Osbeck, var. Pera-rio) insect floral
visiting data of orchards in Itaberaí, Goiás, Brasil.
file:///home/runner/work/ferreira2023/ferreira2023/./</p>
</blockquote>
<p>For additional metadata related to this dataset, please visit <a href="https://github.com/globalbioticinteractions/ferreira2023">https://github.com/globalbioticinteractions/ferreira2023</a>
and inspect associated metadata files including, but not limited to,
<em>README.md</em>, <em>eml.xml</em>, and/or <em>globi.json</em>.</p>
<h1 id="methods">Methods</h1>
<p>The review is performed through programmatic scripts that leverage
tools like Preston, Elton, Nomer combined with third-party tools like
grep, mlr, tail and head.</p>
<table>
<caption>Tools used in this review process</caption>
<colgroup>
<col style="width: 50%" />
<col style="width: 50%" />
</colgroup>
<thead>
<tr class="header">
<th>tool name</th>
<th>version</th>
</tr>
</thead>
<tbody>
<tr class="odd">
<td><a href="httpsmisc://github.com/globalbioticinteractions/elton">elton</a></td>
<td>0.13.2</td>
</tr>
<tr class="even">
<td><a href="https://github.com/globalbioticinteractions/nomer">nomer</a></td>
<td>0.5.6</td>
</tr>
<tr class="odd">
<td><a href="https://miller.readthedocs.io/en/6.8.0/">mlr</a></td>
<td>6.0.0</td>
</tr>
<tr class="even">
<td><a href="https://pandoc.org/">pandoc</a></td>
<td>3.1.6.1</td>
</tr>
</tbody>
</table>
<p>The review process can be described in the form of the script below
<a href="#fn1" class="footnote-ref" id="fnref1" role="doc-noteref"><sup>1</sup></a>.</p>
<pre><code># get versioned copy of the dataset (size approx. 103KiB) under review
elton pull globalbioticinteractions/ferreira2023
# generate review notes
elton review globalbioticinteractions/ferreira2023\
> review.tsv
# export indexed interaction records
elton interactions globalbioticinteractions/ferreira2023\
> interactions.tsv
# export names and align them with the Catalogue of Life using Nomer
elton names globalbioticinteractions/ferreira2023\
| nomer append col\
> name-alignment.tsv</code></pre>
<p>or visually, in a process diagram.</p>
<figure>
<svg alt="Review Process Overview" width="752pt" height="131pt" viewBox="0.00 0.00 752.19 131.00">
<g id="graph0" class="graph" transform="scale(1 1) rotate(0) translate(4 127)">
<title>review</title>
<polygon fill="white" stroke="transparent" points="-4,4 -4,-127 748.19,-127 748.19,4 -4,4"></polygon>
<!-- origin -->
<g id="node1" class="node">
<title>origin</title>
<ellipse fill="none" stroke="black" cx="75.39" cy="-18" rx="75.29" ry="18"></ellipse>
<text text-anchor="middle" x="75.39" y="-14.3" font-family="Times,serif" font-size="14.00">dataset origin</text>
</g>
<!-- elton -->
<g id="node2" class="node">
<title>elton</title>
<ellipse fill="none" stroke="black" cx="145.39" cy="-105" rx="130.78" ry="18"></ellipse>
<text text-anchor="middle" x="145.39" y="-101.3" font-family="Times,serif" font-size="14.00">Elton (a naive review bot)</text>
</g>
<!-- elton->origin -->
<g id="edge1" class="edge">
<title>elton->origin</title>
<path fill="none" stroke="black" d="M127.92,-87.02C122.45,-81.44 116.51,-75.1 111.39,-69 104.94,-61.29 98.37,-52.5 92.64,-44.47"></path>
<polygon fill="black" stroke="black" points="95.4,-42.31 86.8,-36.13 89.67,-46.33 95.4,-42.31"></polygon>
<text text-anchor="middle" x="137.39" y="-57.8" font-family="Times,serif" font-size="14.00">pull (1)</text>
</g>
<!-- interactions -->
<g id="node3" class="node">
<title>interactions</title>
<ellipse fill="none" stroke="black" cx="274.39" cy="-18" rx="105.88" ry="18"></ellipse>
<text text-anchor="middle" x="274.39" y="-14.3" font-family="Times,serif" font-size="14.00">indexed interactions</text>
</g>
<!-- elton->interactions -->
<g id="edge2" class="edge">
<title>elton->interactions</title>
<path fill="none" stroke="black" d="M156.9,-86.86C164.74,-76.24 175.94,-62.96 188.39,-54 196.92,-47.87 206.68,-42.59 216.49,-38.12"></path>
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<text text-anchor="middle" x="236.39" y="-57.8" font-family="Times,serif" font-size="14.00">generates (2)</text>
</g>
<!-- alignment -->
<g id="node4" class="node">
<title>alignment</title>
<ellipse fill="none" stroke="black" cx="489.39" cy="-18" rx="90.98" ry="18"></ellipse>
<text text-anchor="middle" x="489.39" y="-14.3" font-family="Times,serif" font-size="14.00">name alignments</text>
</g>
<!-- nomer -->
<g id="node5" class="node">
<title>nomer</title>
<ellipse fill="none" stroke="black" cx="489.39" cy="-105" rx="137.58" ry="18"></ellipse>
<text text-anchor="middle" x="489.39" y="-101.3" font-family="Times,serif" font-size="14.00">Nomer (a naive review bot)</text>
</g>
<!-- nomer->interactions -->
<g id="edge3" class="edge">
<title>nomer->interactions</title>
<path fill="none" stroke="black" d="M420.55,-89.41C400.15,-84.08 378.02,-77.28 358.39,-69 340.61,-61.5 322.06,-50.81 306.93,-41.23"></path>
<polygon fill="black" stroke="black" points="308.74,-38.23 298.44,-35.75 304.94,-44.11 308.74,-38.23"></polygon>
<text text-anchor="middle" x="421.89" y="-57.8" font-family="Times,serif" font-size="14.00">extract names (3)</text>
</g>
<!-- nomer->alignment -->
<g id="edge5" class="edge">
<title>nomer->alignment</title>
<path fill="none" stroke="black" d="M489.39,-86.8C489.39,-75.16 489.39,-59.55 489.39,-46.24"></path>
<polygon fill="black" stroke="black" points="492.89,-46.18 489.39,-36.18 485.89,-46.18 492.89,-46.18"></polygon>
<text text-anchor="middle" x="537.39" y="-57.8" font-family="Times,serif" font-size="14.00">generates (5)</text>
</g>
<!-- catalog -->
<g id="node6" class="node">
<title>catalog</title>
<ellipse fill="none" stroke="black" cx="671.39" cy="-18" rx="72.59" ry="18"></ellipse>
<text text-anchor="middle" x="671.39" y="-14.3" font-family="Times,serif" font-size="14.00">name catalog</text>
</g>
<!-- nomer->catalog -->
<g id="edge4" class="edge">
<title>nomer->catalog</title>
<path fill="none" stroke="black" d="M541.1,-88.23C556.88,-82.8 574.1,-76.24 589.39,-69 606.37,-60.97 624.28,-50.32 639.01,-40.92"></path>
<polygon fill="black" stroke="black" points="641.26,-43.64 647.74,-35.26 637.45,-37.77 641.26,-43.64"></polygon>
<text text-anchor="middle" x="644.89" y="-57.8" font-family="Times,serif" font-size="14.00">uses (4)</text>
</g>
</g>
</svg>
<figcaption aria-hidden="true">Review Process Overview</figcaption>
</figure>
<p>You can find a recent copy of the full review script at <a href="https://github.com/globalbioticinteractions/globinizer/blob/master/check-dataset.sh">check-data.sh</a>.</p>
<h1 id="results">Results</h1>
<p>In the following sections, the results of the review are summarized
<a href="#fn2" class="footnote-ref" id="fnref2" role="doc-noteref"><sup>2</sup></a>. Then, links to the detailed review
reports are provided.</p>
<h2 id="biotic-interactions">Biotic Interactions</h2>
<figure>
<svg alt="Biotic Interaction Data Model" width="534pt" height="131pt" viewBox="0.00 0.00 534.38 131.00">
<g id="graph0" class="graph" transform="scale(1 1) rotate(0) translate(4 127)">
<title>model</title>
<polygon fill="white" stroke="transparent" points="-4,4 -4,-127 530.38,-127 530.38,4 -4,4"></polygon>
<!-- primaryTaxon -->
<g id="node1" class="node">
<title>primaryTaxon</title>
<ellipse fill="none" stroke="black" cx="96.84" cy="-18" rx="78.79" ry="18"></ellipse>
<text text-anchor="middle" x="96.84" y="-14.3" font-family="Times,serif" font-size="14.00">Primary Taxon</text>
</g>
<!-- associatedTaxon -->
<g id="node2" class="node">
<title>associatedTaxon</title>
<ellipse fill="none" stroke="black" cx="417.84" cy="-18" rx="90.98" ry="18"></ellipse>
<text text-anchor="middle" x="417.84" y="-14.3" font-family="Times,serif" font-size="14.00">Associated Taxon</text>
</g>
<!-- primaryOrganism -->
<g id="node3" class="node">
<title>primaryOrganism</title>
<ellipse fill="none" stroke="black" cx="96.84" cy="-105" rx="96.68" ry="18"></ellipse>
<text text-anchor="middle" x="96.84" y="-101.3" font-family="Times,serif" font-size="14.00">Primary Organism</text>
</g>
<!-- primaryOrganism->primaryTaxon -->
<g id="edge2" class="edge">
<title>primaryOrganism->primaryTaxon</title>
<path fill="none" stroke="black" d="M96.84,-86.8C96.84,-75.16 96.84,-59.55 96.84,-46.24"></path>
<polygon fill="black" stroke="black" points="100.34,-46.18 96.84,-36.18 93.34,-46.18 100.34,-46.18"></polygon>
<text text-anchor="middle" x="138.84" y="-57.8" font-family="Times,serif" font-size="14.00">classifiedAs</text>
</g>
<!-- associatedOrganism -->
<g id="node4" class="node">
<title>associatedOrganism</title>
<ellipse fill="none" stroke="black" cx="417.84" cy="-105" rx="108.58" ry="18"></ellipse>
<text text-anchor="middle" x="417.84" y="-101.3" font-family="Times,serif" font-size="14.00">Associated Organism</text>
</g>
<!-- primaryOrganism->associatedOrganism -->
<g id="edge1" class="edge">
<title>primaryOrganism->associatedOrganism</title>
<path fill="none" stroke="black" d="M194.02,-105C227.11,-105 264.47,-105 299.06,-105"></path>
<polygon fill="black" stroke="black" points="299.21,-108.5 309.21,-105 299.21,-101.5 299.21,-108.5"></polygon>
<text text-anchor="middle" x="251.49" y="-111.8" font-family="Times,serif" font-size="14.00">interactsWith</text>
</g>
<!-- associatedOrganism->associatedTaxon -->
<g id="edge3" class="edge">
<title>associatedOrganism->associatedTaxon</title>
<path fill="none" stroke="black" d="M417.84,-86.8C417.84,-75.16 417.84,-59.55 417.84,-46.24"></path>
<polygon fill="black" stroke="black" points="421.34,-46.18 417.84,-36.18 414.34,-46.18 421.34,-46.18"></polygon>
<text text-anchor="middle" x="459.84" y="-57.8" font-family="Times,serif" font-size="14.00">classifiedAs</text>
</g>
</g>
</svg>
<figcaption aria-hidden="true">Biotic Interaction Data
Model</figcaption>
</figure>
<p>In this review, biotic interactions (or biotic associations) are
modeled as a primary (aka subject, source) organism interacting with an
associate (aka object, target) organism. The dataset under review
classified the primary/associate organisms with specific taxa. The
primary and associate organisms The kind of interaction is documented as
an interaction type.</p>
<p>The dataset under review (aka globalbioticinteractions/ferreira2023)
has size 103KiB and contains 13 interactions with 1 unique types of
associations (e.g., flowersVisitedBy) between 1 primary taxa (e.g.,
Citrus) and 10 associated taxa (e.g., Diptera).</p>
<p>An exhaustive list of indexed interaction claims can be found in <a href="indexed-interactions.csv">csv</a> and <a href="indexed-interactions.tsv">tsv</a> archives. To facilitate
discovery, the first 500 claims available on the html page at <a href="indexed-interactions.html">indexed-interactions.html</a> are shown
below.</p>
<p>The exhaustive list was used to create the following data summaries
below.</p>
<table>
<caption>Sample of Indexed Interaction Claims</caption>
<colgroup>
<col style="width: 25%" />
<col style="width: 25%" />
<col style="width: 25%" />
<col style="width: 25%" />
</colgroup>
<thead>
<tr class="header">
<th>sourceTaxonName</th>
<th>interactionTypeName</th>
<th>targetTaxonName</th>
<th>referenceCitation</th>
</tr>
</thead>
<tbody>
<tr class="odd">
<td>Citrus</td>
<td>flowersVisitedBy</td>
<td>Diptera</td>
<td>interactions.tsv</td>
</tr>
<tr class="even">
<td>Citrus</td>
<td>flowersVisitedBy</td>
<td>Apis</td>
<td>interactions.tsv</td>
</tr>
<tr class="odd">
<td>Citrus</td>
<td>flowersVisitedBy</td>
<td>Apis</td>
<td>interactions.tsv</td>
</tr>
<tr class="even">
<td>Citrus</td>
<td>flowersVisitedBy</td>
<td>Apis</td>
<td>interactions.tsv</td>
</tr>
</tbody>
</table>
<table>
<caption>Most Frequently Mentioned Interaction Types (up to 20 most
frequent)</caption>
<thead>
<tr class="header">
<th>interactionTypeName</th>
<th>count</th>
</tr>
</thead>
<tbody>
<tr class="odd">
<td>flowersVisitedBy</td>
<td>58</td>
</tr>
</tbody>
</table>
<table>
<caption>Most Frequently Mentioned Primary Taxa (up to 20 most
frequent)</caption>
<thead>
<tr class="header">
<th>sourceTaxonName</th>
<th>count</th>
</tr>
</thead>
<tbody>
<tr class="odd">
<td>Citrus</td>
<td>58</td>
</tr>
</tbody>
</table>
<table>
<caption>Most Frequently Mentioned Associate Taxa (up to 20 most
frequent)</caption>
<thead>
<tr class="header">
<th>targetTaxonName</th>
<th>count</th>
</tr>
</thead>
<tbody>
<tr class="odd">
<td>Diptera</td>
<td>17</td>
</tr>
<tr class="even">
<td>Trigona spinipes</td>
<td>12</td>
</tr>
<tr class="odd">
<td>Apis mellifera</td>
<td>9</td>
</tr>
<tr class="even">
<td>Hymenoptera</td>
<td>6</td>
</tr>
<tr class="odd">
<td>Apis</td>
<td>5</td>
</tr>
<tr class="even">
<td>Paratrigona lineata</td>
<td>3</td>
</tr>
<tr class="odd">
<td>Lepidoptera</td>
<td>2</td>
</tr>
<tr class="even">
<td>Plebeia</td>
<td>2</td>
</tr>
<tr class="odd">
<td>Insecta</td>
<td>1</td>
</tr>
<tr class="even">
<td>Tetragona clavipes</td>
<td>1</td>
</tr>
</tbody>
</table>
<table>
<caption>Most Frequent Interactions between Primary and Associate Taxa
(up to 20 most frequent)</caption>
<thead>
<tr class="header">
<th>sourceTaxonName</th>
<th>interactionTypeName</th>
<th>targetTaxonName</th>
<th>count</th>
</tr>
</thead>
<tbody>
<tr class="odd">
<td>Citrus</td>
<td>flowersVisitedBy</td>
<td>Diptera</td>
<td>17</td>
</tr>
<tr class="even">
<td>Citrus</td>
<td>flowersVisitedBy</td>
<td>Trigona spinipes</td>
<td>12</td>
</tr>
<tr class="odd">
<td>Citrus</td>
<td>flowersVisitedBy</td>
<td>Apis mellifera</td>
<td>9</td>
</tr>
<tr class="even">
<td>Citrus</td>
<td>flowersVisitedBy</td>
<td>Hymenoptera</td>
<td>6</td>
</tr>
<tr class="odd">
<td>Citrus</td>
<td>flowersVisitedBy</td>
<td>Apis</td>
<td>5</td>
</tr>
<tr class="even">
<td>Citrus</td>
<td>flowersVisitedBy</td>
<td>Paratrigona lineata</td>
<td>3</td>
</tr>
<tr class="odd">
<td>Citrus</td>
<td>flowersVisitedBy</td>
<td>Lepidoptera</td>
<td>2</td>
</tr>
<tr class="even">
<td>Citrus</td>
<td>flowersVisitedBy</td>
<td>Plebeia</td>
<td>2</td>
</tr>
<tr class="odd">
<td>Citrus</td>
<td>flowersVisitedBy</td>
<td>Insecta</td>
<td>1</td>
</tr>
<tr class="even">
<td>Citrus</td>
<td>flowersVisitedBy</td>
<td>Tetragona clavipes</td>
<td>1</td>
</tr>
</tbody>
</table>
<h3 id="interaction-networks">Interaction Networks</h3>
<p>The figures below provide a graph view on the dataset under review.
The first shows a summary network on the kingdom level, and the second
shows how interactions on the family level. Note that both network
graphs were first aligned taxonomically via the Catalogue of Life.
Please refer to the original (or verbatim) taxonomic names for a more
original view on the interaction data.</p>
<figure>
<svg alt="Interactions on taxonomic kingdom rank as interpreted by the Catalogue of Life download svg" width="100%" height="auto" viewBox="0.00 0.00 540.16 119.72">
<g id="graph0" class="graph" transform="scale(1 1) rotate(0) translate(4 115.72)">
<title>interactions</title>
<polygon fill="white" stroke="transparent" points="-4,4 -4,-115.72 536.16,-115.72 536.16,4 -4,4"></polygon>
<!-- Plantae -->
<g id="node1" class="node">
<title>Plantae</title>
<ellipse fill="#0000ff" fill-opacity="0.066667" stroke="#0000ff" stroke-opacity="0.066667" cx="463.96" cy="-55.86" rx="50.41" ry="50.41"></ellipse>
<text text-anchor="middle" x="463.96" y="-52.16" font-family="Times,serif" font-size="14.00">Plantae</text>
</g>
<!-- Plantae->Plantae -->
<g id="edge2" class="edge">
<title>Plantae->Plantae</title>
<path fill="none" stroke="#cc9900" stroke-opacity="0.533333" d="M513.92,-62.39C524.51,-61.73 532.16,-59.55 532.16,-55.86 532.16,-53.5 529.02,-51.75 523.98,-50.63"></path>
<polygon fill="#cc9900" fill-opacity="0.533333" stroke="#cc9900" stroke-opacity="0.533333" points="524.29,-47.14 513.92,-49.33 523.39,-54.08 524.29,-47.14"></polygon>
</g>
<!-- Animalia -->
<g id="node2" class="node">
<title>Animalia</title>
<ellipse fill="#0000ff" fill-opacity="0.066667" stroke="#0000ff" stroke-opacity="0.066667" cx="55.86" cy="-55.86" rx="55.72" ry="55.72"></ellipse>
<text text-anchor="middle" x="55.86" y="-52.16" font-family="Times,serif" font-size="14.00">Animalia</text>
</g>
<!-- Plantae->Animalia -->
<g id="edge1" class="edge">
<title>Plantae->Animalia</title>
<path fill="none" stroke="#cc9900" stroke-opacity="0.533333" d="M413.51,-55.86C339.99,-55.86 203.32,-55.86 121.88,-55.86"></path>
<polygon fill="#cc9900" fill-opacity="0.533333" stroke="#cc9900" stroke-opacity="0.533333" points="121.74,-52.36 111.74,-55.86 121.74,-59.36 121.74,-52.36"></polygon>
</g>
</g>
</svg>
<figcaption aria-hidden="true">Interactions on taxonomic kingdom rank as
interpreted by the Catalogue of Life <a href="indexed-interactions-col-kingdom-col-kingdom.svg">download
svg</a></figcaption>
</figure>
<figure>
<svg alt="Interactions on the taxonomic family rank as interpreted by the Catalogue of Life. download svg" width="100%" height="auto" viewBox="0.00 0.00 1017.62 173.46">
<g id="graph0" class="graph" transform="scale(1 1) rotate(0) translate(4 169.46)">
<title>interactions</title>
<polygon fill="white" stroke="transparent" points="-4,4 -4,-169.46 1013.62,-169.46 1013.62,4 -4,4"></polygon>
<!-- Rutaceae -->
<g id="node1" class="node">
<title>Rutaceae</title>
<ellipse fill="#0000ff" fill-opacity="0.066667" stroke="#0000ff" stroke-opacity="0.066667" cx="524.36" cy="-82.73" rx="58.88" ry="58.88"></ellipse>
<text text-anchor="middle" x="524.36" y="-79.03" font-family="Times,serif" font-size="14.00">Rutaceae</text>
</g>
<!-- Apidae -->
<g id="node2" class="node">
<title>Apidae</title>
<ellipse fill="#0000ff" fill-opacity="0.066667" stroke="#0000ff" stroke-opacity="0.066667" cx="963.66" cy="-82.73" rx="45.92" ry="45.92"></ellipse>
<text text-anchor="middle" x="963.66" y="-79.03" font-family="Times,serif" font-size="14.00">Apidae</text>
</g>
<!-- Rutaceae->Apidae -->
<g id="edge1" class="edge">
<title>Rutaceae->Apidae</title>
<path fill="none" stroke="#cc9900" stroke-opacity="0.533333" d="M583.15,-82.73C668.1,-82.73 824.11,-82.73 907.54,-82.73"></path>
<polygon fill="#cc9900" fill-opacity="0.533333" stroke="#cc9900" stroke-opacity="0.533333" points="907.59,-86.23 917.59,-82.73 907.59,-79.23 907.59,-86.23"></polygon>
</g>
<!-- Saxifragaceae -->
<g id="node3" class="node">
<title>Saxifragaceae</title>
<ellipse fill="#0000ff" fill-opacity="0.066667" stroke="#0000ff" stroke-opacity="0.066667" cx="82.73" cy="-82.73" rx="82.96" ry="82.96"></ellipse>
<text text-anchor="middle" x="82.73" y="-79.03" font-family="Times,serif" font-size="14.00">Saxifragaceae</text>
</g>
<!-- Rutaceae->Saxifragaceae -->
<g id="edge2" class="edge">
<title>Rutaceae->Saxifragaceae</title>
<path fill="none" stroke="#cc9900" stroke-opacity="0.533333" d="M465.26,-82.73C391.1,-82.73 263.08,-82.73 175.74,-82.73"></path>
<polygon fill="#cc9900" fill-opacity="0.533333" stroke="#cc9900" stroke-opacity="0.533333" points="175.56,-79.23 165.56,-82.73 175.56,-86.23 175.56,-79.23"></polygon>
</g>
</g>
</svg>
<figcaption aria-hidden="true">Interactions on the taxonomic family rank
as interpreted by the Catalogue of Life. <a href="indexed-interactions-col-family-col-family.svg">download
svg</a></figcaption>
</figure>
<p>You can download the indexed dataset under review at <a href="indexed-interactions.csv">indexed-interactions.csv</a>. A
tab-separated file can be found at <a href="indexed-interactions.tsv">indexed-interactions.tsv</a></p>
<p>Learn more about the structure of this download at <a href="https://globalbioticinteractions.org">GloBI website</a>, by
opening a <a href="https://github.com/globalbioticinteractions/globalbioticinteractions/issues/new">GitHub
issue</a>, or by sending an <a href="mailto:info@globalbioticinteractions.org">email</a>.</p>
<p>Another way to discover the dataset under review is by searching for
it on the <a href="https://www.globalbioticinteractions.org/?accordingTo=globi%3Aglobalbioticinteractions%2Fferreira2023">GloBI
website</a>.</p>
<h2 id="taxonomic-alignment">Taxonomic Alignment</h2>
<p>As part of the review, all names are aligned against various name
catalogs (e.g., col, ncbi, discoverlife, gbif, itis, globi, mdd, tpt,
and pbdb). These alignments may serve as a way to review name usage or
aid in selecting of a suitable taxonomic name resource to use.</p>
<table>
<caption>Sample of Name Alignments</caption>
<thead>
<tr class="header">
<th>providedName</th>
<th>relationName</th>
<th>resolvedCatalogName</th>
<th>resolvedName</th>
</tr>
</thead>
<tbody>
<tr class="odd">
<td>Apis</td>
<td>HAS_ACCEPTED_NAME</td>
<td>col</td>
<td>Apis</td>
</tr>
<tr class="even">
<td>Apis mellifera</td>
<td>HAS_ACCEPTED_NAME</td>
<td>col</td>
<td>Apis mellifera</td>
</tr>
<tr class="odd">
<td>Citrus</td>
<td>HAS_ACCEPTED_NAME</td>
<td>col</td>
<td>Citrus</td>
</tr>
<tr class="even">
<td>Diptera</td>
<td>SYNONYM_OF</td>
<td>col</td>
<td>Saxifraga</td>
</tr>
</tbody>
</table>
<table>
<caption>Distribution of Taxonomic Ranks of Aligned Names by Catalog.
Names that were not aligned with a catalog are counted as NAs. So, the
total number of unaligned names for a catalog will be listed in their NA
row.</caption>
<thead>
<tr class="header">
<th>resolvedCatalogName</th>
<th>resolvedRank</th>
<th>count</th>
</tr>
</thead>
<tbody>
<tr class="odd">
<td>tpt</td>
<td>NA</td>
<td>10</td>
</tr>
<tr class="even">
<td>tpt</td>
<td>species</td>
<td>1</td>
</tr>
<tr class="odd">
<td>pbdb</td>
<td>genus</td>
<td>3</td>
</tr>
<tr class="even">
<td>pbdb</td>
<td>order</td>
<td>3</td>
</tr>
<tr class="odd">
<td>pbdb</td>
<td>NA</td>
<td>3</td>
</tr>
<tr class="even">
<td>pbdb</td>
<td>species</td>
<td>1</td>
</tr>
<tr class="odd">
<td>pbdb</td>
<td>class</td>
<td>1</td>
</tr>
<tr class="even">
<td>ncbi</td>
<td>species</td>
<td>4</td>
</tr>
<tr class="odd">
<td>ncbi</td>
<td>genus</td>
<td>3</td>
</tr>
<tr class="even">
<td>ncbi</td>
<td>order</td>
<td>3</td>
</tr>
<tr class="odd">
<td>ncbi</td>
<td>class</td>
<td>1</td>
</tr>
<tr class="even">
<td>mdd</td>
<td>NA</td>
<td>11</td>
</tr>
<tr class="odd">
<td>itis</td>
<td>species</td>
<td>4</td>
</tr>
<tr class="even">
<td>itis</td>
<td>genus</td>
<td>3</td>
</tr>
<tr class="odd">
<td>itis</td>
<td>order</td>
<td>3</td>
</tr>
<tr class="even">
<td>itis</td>
<td>class</td>
<td>1</td>
</tr>
<tr class="odd">
<td>globi</td>
<td>NA</td>
<td>6</td>
</tr>
<tr class="even">
<td>globi</td>
<td>genus</td>
<td>5</td>
</tr>
<tr class="odd">
<td>globi</td>
<td>species</td>
<td>4</td>
</tr>
<tr class="even">
<td>globi</td>
<td>order</td>
<td>3</td>
</tr>
<tr class="odd">
<td>globi</td>
<td>class</td>
<td>1</td>
</tr>
<tr class="even">
<td>globi</td>
<td>phylum</td>
<td>1</td>
</tr>
<tr class="odd">
<td>gbif</td>
<td>genus</td>
<td>4</td>
</tr>
<tr class="even">
<td>gbif</td>
<td>species</td>
<td>4</td>
</tr>
<tr class="odd">
<td>gbif</td>
<td>order</td>
<td>3</td>
</tr>
<tr class="even">
<td>gbif</td>
<td>class</td>
<td>1</td>
</tr>
<tr class="odd">
<td>discoverlife</td>
<td>NA</td>
<td>7</td>
</tr>
<tr class="even">
<td>discoverlife</td>
<td>species</td>
<td>4</td>
</tr>
<tr class="odd">
<td>col</td>
<td>genus</td>
<td>4</td>
</tr>
<tr class="even">
<td>col</td>
<td>species</td>
<td>4</td>
</tr>
<tr class="odd">
<td>col</td>
<td>order</td>
<td>3</td>
</tr>
<tr class="even">
<td>col</td>
<td>class</td>
<td>1</td>
</tr>
</tbody>
</table>
<table>
<caption>Name relationship types per catalog. Name relationship type
“NONE” means that a name was not recognized by the associated catalog.
“SAME_AS” indicates either a “HAS_ACCEPTED_NAME” or “SYNONYM_OF” name
relationship type. We recognize that “SYNONYM_OF” encompasses many types
of nomenclatural synonymies <span class="citation" data-cites="ICZN_1999">(ICZN 1999)</span> (e.g., junior synonym, senior
synonyms).</caption>
<thead>
<tr class="header">
<th>resolvedCatalogName</th>
<th>relationName</th>
<th>count</th>
</tr>
</thead>
<tbody>
<tr class="odd">
<td>col</td>
<td>HAS_ACCEPTED_NAME</td>
<td>11</td>
</tr>
<tr class="even">
<td>col</td>
<td>SYNONYM_OF</td>
<td>1</td>
</tr>
<tr class="odd">
<td>discoverlife</td>
<td>NONE</td>
<td>7</td>
</tr>
<tr class="even">
<td>discoverlife</td>
<td>HAS_ACCEPTED_NAME</td>
<td>4</td>
</tr>
<tr class="odd">
<td>gbif</td>
<td>HAS_ACCEPTED_NAME</td>
<td>12</td>
</tr>
<tr class="even">
<td>gbif</td>
<td>SYNONYM_OF</td>
<td>1</td>
</tr>
<tr class="odd">
<td>globi</td>
<td>SAME_AS</td>
<td>148</td>
</tr>
<tr class="even">
<td>itis</td>
<td>HAS_ACCEPTED_NAME</td>
<td>11</td>
</tr>
<tr class="odd">
<td>mdd</td>
<td>NONE</td>
<td>11</td>
</tr>
<tr class="even">
<td>ncbi</td>
<td>SAME_AS</td>
<td>11</td>
</tr>
<tr class="odd">
<td>pbdb</td>
<td>HAS_ACCEPTED_NAME</td>
<td>8</td>
</tr>
<tr class="even">
<td>pbdb</td>
<td>SYNONYM_OF</td>
<td>1</td>
</tr>
<tr class="odd">
<td>pbdb</td>
<td>NONE</td>
<td>3</td>
</tr>
<tr class="even">
<td>tpt</td>
<td>NONE</td>
<td>10</td>
</tr>
<tr class="odd">
<td>tpt</td>
<td>HAS_ACCEPTED_NAME</td>
<td>1</td>
</tr>
</tbody>
</table>
<table>
<caption>List of Available Name Alignment Reports</caption>
<colgroup>
<col style="width: 50%" />
<col style="width: 50%" />
</colgroup>
<thead>
<tr class="header">
<th>catalog name</th>
<th>alignment results</th>
</tr>
</thead>
<tbody>
<tr class="odd">
<td>col</td>
<td><a href="indexed-names-resolved-col.html">associated names
alignments (first 500</a>, full <a href="indexed-names-resolved-col.csv">csv</a>/<a href="indexed-names-resolved-col.tsv">tsv</a>)</td>
</tr>
<tr class="even">
<td>ncbi</td>
<td><a href="indexed-names-resolved-ncbi.html">associated names
alignments (first 500</a>, full <a href="indexed-names-resolved-ncbi.csv">csv</a>/<a href="indexed-names-resolved-ncbi.tsv">tsv</a>)</td>
</tr>
<tr class="odd">
<td>discoverlife</td>
<td><a href="indexed-names-resolved-discoverlife.html">associated names
alignments (first 500</a>, full <a href="indexed-names-resolved-discoverlife.csv">csv</a>/<a href="indexed-names-resolved-discoverlife.tsv">tsv</a>)</td>
</tr>
<tr class="even">
<td>gbif</td>
<td><a href="indexed-names-resolved-gbif.html">associated names
alignments (first 500</a>, full <a href="indexed-names-resolved-gbif.csv">csv</a>/<a href="indexed-names-resolved-gbif.tsv">tsv</a>)</td>
</tr>
<tr class="odd">
<td>itis</td>
<td><a href="indexed-names-resolved-itis.html">associated names
alignments (first 500</a>, full <a href="indexed-names-resolved-itis.csv">csv</a>/<a href="indexed-names-resolved-itis.tsv">tsv</a>)</td>
</tr>
<tr class="even">
<td>globi</td>
<td><a href="indexed-names-resolved-globi.html">associated names
alignments (first 500</a>, full <a href="indexed-names-resolved-globi.csv">csv</a>/<a href="indexed-names-resolved-globi.tsv">tsv</a>)</td>
</tr>
<tr class="odd">
<td>mdd</td>
<td><a href="indexed-names-resolved-mdd.html">associated names
alignments (first 500</a>, full <a href="indexed-names-resolved-mdd.csv">csv</a>/<a href="indexed-names-resolved-mdd.tsv">tsv</a>)</td>
</tr>
<tr class="even">
<td>tpt</td>
<td><a href="indexed-names-resolved-tpt.html">associated names
alignments (first 500</a>, full <a href="indexed-names-resolved-tpt.csv">csv</a>/<a href="indexed-names-resolved-tpt.tsv">tsv</a>)</td>
</tr>
<tr class="odd">
<td>pbdb</td>
<td><a href="indexed-names-resolved-pbdb.html">associated names
alignments (first 500</a>, full <a href="indexed-names-resolved-pbdb.csv">csv</a>/<a href="indexed-names-resolved-pbdb.tsv">tsv</a>)</td>
</tr>
</tbody>
</table>
<h2 id="additional-reviews">Additional Reviews</h2>
<p>Elton, Nomer, and other tools may have difficulties interpreting
existing species interaction datasets. Or, they may misbehave, or
otherwise show unexpected behavior. As part of the review process,
detailed review notes are kept that document possibly misbehaving, or
confused, review bots. An sample of review notes associated with this
review can be found below.</p>
<table>
<caption>First few lines in the review notes.</caption>
<colgroup>
<col style="width: 33%" />
<col style="width: 33%" />
<col style="width: 33%" />
</colgroup>
<thead>
<tr class="header">
<th>reviewDate</th>
<th>reviewCommentType</th>
<th>reviewComment</th>
</tr>
</thead>
<tbody>
<tr class="odd">
<td>2024-02-10T19:29:06Z</td>
<td>note</td>
<td>found invalid location: [invalid (latitude, longitude) =
(-16,06618,-49,77326)]</td>
</tr>
<tr class="even">
<td>2024-02-10T19:29:06Z</td>
<td>note</td>
<td>found invalid location: [invalid (latitude, longitude) =
(-16,06618,-49,77326)]</td>
</tr>
<tr class="odd">
<td>2024-02-10T19:29:06Z</td>
<td>note</td>
<td>found invalid location: [invalid (latitude, longitude) =
(-16,06618,-49,77326)]</td>
</tr>
<tr class="even">
<td>2024-02-10T19:29:06Z</td>
<td>note</td>
<td>found invalid location: [invalid (latitude, longitude) =
(-16,06618,-49,77326)]</td>
</tr>
</tbody>
</table>
<p>In addtion, you can find the most frequently occurring notes in the
table below.</p>
<table>
<caption>Most frequently occurring review notes, if any.</caption>
<colgroup>
<col style="width: 50%" />
<col style="width: 50%" />
</colgroup>
<thead>
<tr class="header">
<th>reviewComment</th>
<th>count</th>
</tr>
</thead>
<tbody>
<tr class="odd">
<td>found invalid location: [invalid (latitude, longitude) =
(-16,06618,-49,77326)]</td>
<td>34</td>
</tr>
<tr class="even">
<td>found invalid location: [invalid (latitude, longitude) =
(-16,01645,-49,98505)]</td>
<td>13</td>
</tr>
<tr class="odd">
<td>found invalid location: [invalid (latitude, longitude) =
(-16,07233,-49,95806)]</td>
<td>11</td>
</tr>
</tbody>
</table>
<p>For addition information on review notes, please have a look at the
first 500 <a href="review.html">Review Notes</a> or the download full <a href="review.csv">csv</a> or <a href="review.tsv">tsv</a> archives.</p>
<h2 id="globi-review-badge">GloBI Review Badge</h2>
<p>As part of the review, a review badge is generated. This review badge
can be included in webpages to indicate the review status of the dataset
under review.</p>
<figure>
<svg alt="Sample of a GloBI Review Badge " width="62" height="20" viewBox="0 0 62 20"> <linearGradient id="b" x2="0" y2="100%"> <stop offset="0" stop-color="#bbb" stop-opacity=".1"></stop> <stop offset="1" stop-opacity=".1"></stop> </linearGradient> <mask id="a"> <rect width="62" height="20" rx="3" fill="#fff"></rect> </mask> <g mask="url(#a)"> <path fill="#555" d="M0 0h43v20H0z"></path> <path fill="#dfb317" d="M43 0h65v20H43z"></path> <path fill="url(#b)" d="M0 0h82v20H0z"></path> </g> <g fill="#fff" text-anchor="middle" font-family="DejaVu Sans,Verdana,Geneva,sans-serif" font-size="11"> <text x="21.5" y="15" fill="#010101" fill-opacity=".3"> review </text> <text x="21.5" y="14"> review </text> <text x="53" y="15" fill="#010101" fill-opacity=".3"> 💬 </text> <text x="53" y="14"> 💬 </text> </g> </svg>
<figcaption aria-hidden="true">Sample of a GloBI Review Badge <a href="#fn3" class="footnote-ref" id="fnref3" role="doc-noteref"><sup>3</sup></a></figcaption>
</figure>
<p>Note that if the badge is green, no review notes were generated. If
the badge is yellow, the review bots may need some help with
interpreting the species interaction data.</p>
<h2 id="globi-index-badge">GloBI Index Badge</h2>
<p>If the dataset under review has been <a href="https://globalbioticinteractions.org/contribute">registered with
GloBI</a>, and has been succesfully indexed by GloBI, the GloBI Index
Status Badge will turn green. This means that the dataset under review
was indexed by GloBI and is available through GloBI services and derived
data products.</p>
<figure>
<img src="data:image/svg+xml;charset=UTF-8;base64,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" alt="Sample of a GloBI Index Badge " />
<figcaption aria-hidden="true">Sample of a GloBI Index Badge <a href="#fn4" class="footnote-ref" id="fnref4" role="doc-noteref"><sup>4</sup></a></figcaption>
</figure>
<p>If you’d like to keep track of reviews or index status of the dataset
under review, please visit <a href="https://globalbioticinteractions.org/datasets">GloBI’s dataset
index <a href="#fn5" class="footnote-ref" id="fnref5" role="doc-noteref"><sup>5</sup></a></a> for badge examples.</p>
<h1 id="discussion">Discussion</h1>
<p>This review is intended to provide a perspective on the dataset to
aid understanding of species interaction claims discovered. However,
this review should <em>not</em> be considered as fitness of use or other
kind of quality assessment. Instead, the review may be used as in
indication of the open-ness<a href="#fn6" class="footnote-ref" id="fnref6" role="doc-noteref"><sup>6</sup></a> and FAIRness <span class="citation" data-cites="Wilkinson_2016 trekels_maarten_2023_8176978">(Wilkinson et
al. 2016; Trekels et al. 2023)</span> of the dataset: in order to
perform this review, the data was likely openly available,
<strong>F</strong>indable, <strong>A</strong>ccessible,
<strong>I</strong>nteroperable and <strong>R</strong>eusable. Currently,
this Open-FAIR assessment is qualitative, and with measurement units
specified, a more quantitative approach can be implemented.</p>
<p>This report also showcases the reuse of machine-actionable
(meta)data, something highly recommended by the FAIR Data Principles
<span class="citation" data-cites="Wilkinson_2016">(Wilkinson et al.
2016)</span>. Making (meta)data machine-actionable means that it can be
more precisely processed by computers, enabling even naive review bots
like Nomer and Elton to interpret the data effectively. This capability
is crucial for not just automating the generation of reports, but also
to facilitate seamless data exchanges, i.e., interoperability.</p>
<h1 id="acknowledgements">Acknowledgements</h1>
<p>We thank the many humans that created us and those who created and
maintained the data, software and other intellectual resources that were
used for producing this review. In addition, we are grateful for the
natural resources providing the basis for these human and bot
activities.</p>
<h1 class="unnumbered" id="bibliography">References</h1>
<div id="refs" class="references csl-bib-body hanging-indent" role="list">
<div id="ref-ICZN_1999" class="csl-entry" role="listitem">
ICZN. 1999. <span>“International Code of Zoological
Nomenclature.”</span> The International Trust for Zoological
Nomenclature, London, UK. <a href="https://www.iczn.org/the-code/the-code-online/">https://www.iczn.org/the-code/the-code-online/</a>.
</div>
<div id="ref-Poelen_2014" class="csl-entry" role="listitem">
Poelen, Jorrit H., James D. Simons, and Chris J. Mungall. 2014.
<span>“Global Biotic Interactions: An Open Infrastructure to Share and
Analyze Species-Interaction Datasets.”</span> <em>Ecological
Informatics</em> 24 (November): 148–59. <a href="https://doi.org/10.1016/j.ecoinf.2014.08.005">https://doi.org/10.1016/j.ecoinf.2014.08.005</a>.
</div>
<div id="ref-trekels_maarten_2023_8176978" class="csl-entry" role="listitem">
Trekels, Maarten, Debora Pignatari Drucker, José Augusto Salim, Jeff
Ollerton, Jorrit Poelen, Filipi Miranda Soares, Max Rünzel, Muo Kasina,
Quentin Groom, and Mariano Devoto. 2023. <span>“<span class="nocase">WorldFAIR Project (D10.1) Agriculture-related pollinator
data standards use cases report</span>.”</span> Zenodo. <a href="https://doi.org/10.5281/zenodo.8176978">https://doi.org/10.5281/zenodo.8176978</a>.
</div>
<div id="ref-Wilkinson_2016" class="csl-entry" role="listitem">
Wilkinson, Mark D., Michel Dumontier, IJsbrand Jan Aalbersberg,
Gabrielle Appleton, Myles Axton, Arie Baak, Niklas Blomberg, et al.
2016. <span>“The <span>FAIR</span> Guiding Principles for Scientific
Data Management and Stewardship.”</span> <em>Scientific Data</em> 3 (1).
<a href="https://doi.org/10.1038/sdata.2016.18">https://doi.org/10.1038/sdata.2016.18</a>.
</div>
</div>
<aside id="footnotes" class="footnotes footnotes-end-of-document" role="doc-endnotes">
<hr />
<ol>
<li id="fn1"><p>Note that you have to first get the data (e.g., via
elton pull globalbioticinteractions/ferreira2023) before being able to
generate reviews (e.g., elton review
globalbioticinteractions/ferreira2023), extract interaction claims
(e.g., elton interactions globalbioticinteractions/ferreira2023), or
list taxonomic names (e.g., elton names
globalbioticinteractions/ferreira2023)<a href="#fnref1" class="footnote-back" role="doc-backlink">↩︎</a></p></li>
<li id="fn2"><p>Disclaimer: The results in this review should be
considered friendly, yet naive, notes from an unsophisticated robot.
Please keep that in mind when considering the review results.<a href="#fnref2" class="footnote-back" role="doc-backlink">↩︎</a></p></li>
<li id="fn3"><p>Up-to-date status of the GloBI Review Badge can be
retrieved from the <a href="https://depot.globalbioticinteractions.org/reviews/globalbioticinteractions/ferreira2023/review.svg">GloBI
Review Depot</a><a href="#fnref3" class="footnote-back" role="doc-backlink">↩︎</a></p></li>
<li id="fn4"><p>Up-to-date status of the GloBI Index Badge can be
retrieved from <a href="https://api.globalbioticinteractions.org/interaction.svg?interactionType=ecologicallyRelatedTo&accordingTo=globi:globalbioticinteractions/ferreira2023&refutes=true&refutes=false">GloBI’s
API</a><a href="#fnref4" class="footnote-back" role="doc-backlink">↩︎</a></p></li>
<li id="fn5"><p>At time of writing (2024-02-10) the version of the GloBI
dataset index was available at
[https://globalbioticinteractions.org/datasets](https://globalbioticinteractions.org/datasets)<a href="#fnref5" class="footnote-back" role="doc-backlink">↩︎</a></p></li>
<li id="fn6"><p>According to http://opendefinition.org/: “Open data is
data that can be freely used, re-used and redistributed by anyone -
subject only, at most, to the requirement to attribute and
sharealike.”<a href="#fnref6" class="footnote-back" role="doc-backlink">↩︎</a></p></li>
</ol>
</aside>
</body>
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