{
"name": "bionomia-attributions",
"id": "591c4da7-967c-4cad-ad60-b276e60fb4d2",
"licenses": [
{
"name": "public-domain-dedication",
"path": "http://creativecommons.org/publicdomain/zero/1.0/legalcode"
}
],
"profile": "tabular-data-package",
"title": "ATTRIBUTIONS MADE FOR: NEON Biorepository Benthic Macroinvertebrate Collection (Unsorted Bulk Sample)",
"description": "This collection contains unsorted bulk benthic macroinvertebrate samples collected in the field (NEON sample class: inv_fielddata_in.geneticSampleID). Benthic macroinvertebrate samples are collected three times per year at wadeable stream, river, and lake sites during aquatic biology bout windows, roughly in spring, summer, and fall. Samples are collected using the most appropriate sampler for the habitat type, including Surber, Hess, hand corer, modified kicknet, D-frame sweep, and petite ponar samplers. Macroinvertebrates are sampled using a percent-based macrohabitat approach. In wadeable streams, samples are collected in the two most dominant habitat types (e.g. riffles, runs, pools, step pools) within each 1 km-long wadeable stream site. In lakes, samples are collected near the buoy, inlet, and outlet sensors using a petite ponar, and in littoral areas using a D-frame sweep. In rivers, samples are collected near the buoy and two other deep-water locations using a petite ponar sampler, and in littoral areas using a D-frame sweep or large-woody debris sampler. Field protocols differ depending on the habitat and substrate being sampled. However, all samples are collected from the surface of the natural substratum in each habitat. Samples are preserved in ethanol in the field, and returned to the domain support facility for a preservative change prior to shipping. The DNA samples from bout 2 (summer) are sent to an external laboratory for metabarcoding. The unsorted bulk DNA samples from bout 1 (spring) and bout 3 (autumn) are archived for future research. Unsorted bulk macroinvertebrate samples are preserved in 70-95% ethanol and archived in a temperature (17-18°C) and humidity controlled environment. See related links below for protocols and NEON related data products.",
"datasetKey": "591c4da7-967c-4cad-ad60-b276e60fb4d2",
"homepage": "https://bionomia.net/dataset/591c4da7-967c-4cad-ad60-b276e60fb4d2",
"created": "2024-01-29T21:45:21+00:00",
"sources": [
{
"title": "NEON Biorepository Benthic Macroinvertebrate Collection (Unsorted Bulk Sample)",
"path": "https://doi.org/10.15468/4yjpkj"
}
],
"keywords": [
"specimen",
"museum",
"collection",
"credit",
"attribution",
"bionomia"
],
"image": "https://bionomia.net/images/logo.png",
"resources": [
{
"name": "users",
"description": "List of unique people that have either claimed or been attributed occurrence records through examination of either dwc:recordedBy or dwc:identifiedBy. Wikidata-based people contain some demographic information.",
"format": "csv",
"mediatype": "text/csv",
"encoding": "utf-8",
"profile": "tabular-data-resource",
"schema": {
"fields": [
{
"name": "id",
"type": "integer"
},
{
"name": "name",
"type": "string",
"skos:exactMatch": "http://schema.org/name"
},
{
"name": "familyName",
"type": "string",
"skos:exactMatch": "http://schema.org/familyName"
},
{
"name": "particle",
"type": "string"
},
{
"name": "givenName",
"type": "string",
"skos:exactMatch": "http://schema.org/givenName"
},
{
"name": "alternateName",
"type": "array",
"skos:exactMatch": "http://schema.org/alternateName"
},
{
"name": "sameAs",
"type": "string",
"format": "uri",
"skos:exactMatch": "http://schema.org/sameAs"
},
{
"name": "orcid",
"type": "string"
},
{
"name": "wikidata",
"type": "string"
},
{
"name": "birthDate",
"type": "date",
"skos:exactMatch": "https://schema.org/birthDate"
},
{
"name": "birthDatePrecision",
"type": "string",
"description": "Values are year, month, or day and indicate the precision of birthDate; portions of birthDate should be ignored below that of the birthDatePrecision."
},
{
"name": "deathDate",
"type": "date",
"skos:exactMatch": "https://schema.org/deathDate"
},
{
"name": "deathDatePrecision",
"type": "string",
"description": "Values are year, month, or day and indicate the precision of deathDate; portions of deathDate should be ignored below that of the deathDatePrecision."
}
]
},
"primaryKey": "id",
"path": "https://bionomia.net/dataset/591c4da7-967c-4cad-ad60-b276e60fb4d2/users.csv.zip",
"compression": "zip",
"bytes": 611
},
{
"name": "problem-collector-dates",
"description": "Associated occurrence records whose eventDates are earlier than a collector's birthDate or later than their deathDate.",
"format": "csv",
"mediatype": "text/csv",
"encoding": "utf-8",
"profile": "tabular-data-resource",
"schema": {
"fields": [
{
"name": "occurrence_id",
"type": "integer"
},
{
"name": "catalogNumber",
"type": "string",
"skos:exactMatch": "http://rs.tdwg.org/dwc/terms/catalogNumber"
},
{
"name": "user_id",
"type": "integer"
},
{
"name": "wikidata",
"type": "string"
},
{
"name": "birthDate",
"type": "date",
"skos:exactMatch": "https://schema.org/birthDate"
},
{
"name": "birthDatePrecision",
"type": "string",
"description": "Values are year, month, or day and indicate the precision of birthDate; portions of birthDate should be ignored below that of the birthDatePrecision."
},
{
"name": "deathDate",
"type": "date",
"skos:exactMatch": "https://schema.org/deathDate"
},
{
"name": "deathDatePrecision",
"type": "string",
"description": "Values are year, month, or day and indicate the precision of deathDate; portions of deathDate should be ignored below that of the deathDatePrecision."
},
{
"name": "eventDate",
"type": "string",
"skos:exactMatch": "http://rs.tdwg.org/dwc/terms/eventDate"
},
{
"name": "year",
"type": "string",
"skos:exactMatch": "http://rs.tdwg.org/dwc/terms/year"
}
]
},
"foreignKeys": [
{
"fields": "user_id",
"reference": {
"resource": "users",
"fields": "id"
}
},
{
"fields": "occurrence_id",
"reference": {
"resource": "occurrences",
"fields": "gbifID"
}
}
],
"path": "https://bionomia.net/dataset/591c4da7-967c-4cad-ad60-b276e60fb4d2/problem_collector_dates.csv.zip",
"compression": "zip",
"bytes": 233
},
{
"name": "occurrences",
"description": "Occurrence records shared to GBIF, limited to those linked to a collector or determiner.",
"format": "csv",
"mediatype": "text/csv",
"encoding": "utf-8",
"profile": "tabular-data-resource",
"schema": {
"fields": [
{
"name": "gbifID",
"type": "integer"
},
{
"name": "datasetKey",
"type": "string",
"format": "uuid",
"skos:exactMatch": "http://rs.gbif.org/terms/1.0/datasetKey"
},
{
"name": "license",
"type": "string",
"skos:exactMatch": "http://rs.tdwg.org/dwc/terms/license"
},
{
"name": "occurrenceID",
"type": "string",
"skos:exactMatch": "http://rs.tdwg.org/dwc/terms/occurrenceID"
},
{
"name": "basisOfRecord",
"type": "string",
"skos:exactMatch": "http://rs.tdwg.org/dwc/terms/basisOfRecord"
},
{
"name": "dateIdentified",
"type": "string",
"skos:exactMatch": "http://rs.tdwg.org/dwc/terms/dateIdentified"
},
{
"name": "decimalLatitude",
"type": "string",
"skos:exactMatch": "http://rs.tdwg.org/dwc/terms/decimalLatitude"
},
{
"name": "decimalLongitude",
"type": "string",
"skos:exactMatch": "http://rs.tdwg.org/dwc/terms/decimalLongitude"
},
{
"name": "country",
"type": "string",
"skos:exactMatch": "http://rs.tdwg.org/dwc/terms/country"
},
{
"name": "countryCode",
"type": "string",
"skos:exactMatch": "http://rs.tdwg.org/dwc/terms/countryCode"
},
{
"name": "eventDate",
"type": "string",
"skos:exactMatch": "http://rs.tdwg.org/dwc/terms/eventDate"
},
{
"name": "year",
"type": "string",
"skos:exactMatch": "http://rs.tdwg.org/dwc/terms/year"
},
{
"name": "kingdom",
"type": "string",
"skos:exactMatch": "http://rs.tdwg.org/dwc/terms/kingdom"
},
{
"name": "family",
"type": "string",
"skos:exactMatch": "http://rs.tdwg.org/dwc/terms/family"
},
{
"name": "identifiedBy",
"type": "string",
"skos:exactMatch": "http://rs.tdwg.org/dwc/terms/identifiedBy"
},
{
"name": "institutionCode",
"type": "string",
"skos:exactMatch": "http://rs.tdwg.org/dwc/terms/institutionCode"
},
{
"name": "collectionCode",
"type": "string",
"skos:exactMatch": "http://rs.tdwg.org/dwc/terms/collectionCode"
},
{
"name": "catalogNumber",
"type": "string",
"skos:exactMatch": "http://rs.tdwg.org/dwc/terms/catalogNumber"
},
{
"name": "recordedBy",
"type": "string",
"skos:exactMatch": "http://rs.tdwg.org/dwc/terms/recordedBy"
},
{
"name": "scientificName",
"type": "string",
"skos:exactMatch": "http://rs.tdwg.org/dwc/terms/scientificName"
},
{
"name": "typeStatus",
"type": "string",
"skos:exactMatch": "http://rs.tdwg.org/dwc/terms/typeStatus"
},
{
"name": "recordedByID",
"type": "string",
"skos:exactMatch": "http://rs.tdwg.org/dwc/terms/recordedByID"
},
{
"name": "identifiedByID",
"type": "string",
"skos:exactMatch": "http://rs.tdwg.org/dwc/terms/identifiedByID"
}
]
},
"primaryKey": "gbifID",
"path": "https://bionomia.net/dataset/591c4da7-967c-4cad-ad60-b276e60fb4d2/occurrences.csv.zip",
"compression": "zip",
"bytes": 1755
},
{
"name": "unascribed",
"description": "Negative assertions made alongside the provenance, which may help inform local disambiguation activities.",
"format": "csv",
"mediatype": "text/csv",
"encoding": "utf-8",
"profile": "tabular-data-resource",
"schema": {
"fields": [
{
"name": "occurrence_id",
"type": "integer"
},
{
"name": "catalogNumber",
"type": "string",
"skos:exactMatch": "http://rs.tdwg.org/dwc/terms/catalogNumber"
},
{
"name": "recordedBy",
"type": "string",
"skos:exactMatch": "http://rs.tdwg.org/dwc/terms/recordedeBy"
},
{
"name": "recordedByID",
"type": "string",
"skos:exactMatch": "http://rs.tdwg.org/dwc/terms/recordedByID"
},
{
"name": "identifiedBy",
"type": "string",
"skos:exactMatch": "http://rs.tdwg.org/dwc/terms/identifiedBy"
},
{
"name": "identifiedByID",
"type": "string",
"skos:exactMatch": "http://rs.tdwg.org/dwc/terms/identifiedByID"
},
{
"name": "differentFrom",
"type": "string",
"skos:exactMatch": "http://www.w3.org/2002/07/owl#differentFrom"
},
{
"name": "user_id",
"type": "integer"
},
{
"name": "name",
"type": "string",
"skos:exactMatch": "http://schema.org/name"
},
{
"name": "wikidata",
"type": "string"
},
{
"name": "orcid",
"type": "string"
},
{
"name": "createdBy",
"type": "string",
"skos:exactMatch": "http://schema.org/name"
},
{
"name": "createdByURI",
"type": "string",
"format": "uri"
},
{
"name": "createdDateTime",
"type": "datetime",
"format": "any"
},
{
"name": "modifiedDateTime",
"type": "datetime",
"format": "any"
}
]
},
"foreignKeys": [
{
"fields": "occurrence_id",
"reference": {
"resource": "occurrences",
"fields": "gbifID"
}
},
{
"fields": "user_id",
"reference": {
"resource": "users",
"fields": "id"
}
}
],
"path": "https://bionomia.net/dataset/591c4da7-967c-4cad-ad60-b276e60fb4d2/not_them_assertions.csv.zip",
"compression": "zip",
"bytes": 259
},
{
"name": "article-occurrences",
"description": "A join table between occurrence and article to permit examination of particular occurrence records that were included in a GBIF download and later used in a published article.",
"format": "csv",
"mediatype": "text/csv",
"encoding": "utf-8",
"profile": "tabular-data-resource",
"schema": {
"fields": [
{
"name": "article_id",
"type": "integer"
},
{
"name": "occurrence_id",
"type": "integer"
}
]
},
"foreignKeys": [
{
"fields": "article_id",
"reference": {
"resource": "articles",
"fields": "id"
}
},
{
"fields": "occurrence_id",
"reference": {
"resource": "occurrences",
"fields": "gbifID"
}
}
],
"path": "https://bionomia.net/dataset/591c4da7-967c-4cad-ad60-b276e60fb4d2/citations.csv.zip",
"compression": "zip",
"bytes": 148
},
{
"name": "attributions",
"description": "Details about the provenance for an attributed or claimed occurrence record.",
"format": "csv",
"mediatype": "text/csv",
"encoding": "utf-8",
"profile": "tabular-data-resource",
"schema": {
"fields": [
{
"name": "user_id",
"type": "integer"
},
{
"name": "occurrence_id",
"type": "integer"
},
{
"name": "identifiedBy",
"type": "string",
"format": "uri",
"skos:exactMatch": "http://rs.tdwg.org/dwc/iri/identifiedBy"
},
{
"name": "recordedBy",
"type": "string",
"format": "uri",
"skos:exactMatch": "http://rs.tdwg.org/dwc/iri/recordedBy"
},
{
"name": "createdBy",
"type": "string",
"skos:exactMatch": "http://schema.org/name"
},
{
"name": "createdByURI",
"type": "string",
"format": "uri"
},
{
"name": "createdDateTime",
"type": "datetime",
"format": "any"
},
{
"name": "modifiedDateTime",
"type": "datetime",
"format": "any"
}
]
},
"foreignKeys": [
{
"fields": "user_id",
"reference": {
"resource": "users",
"fields": "id"
}
},
{
"fields": "occurrence_id",
"reference": {
"resource": "occurrences",
"fields": "gbifID"
}
}
],
"path": "https://bionomia.net/dataset/591c4da7-967c-4cad-ad60-b276e60fb4d2/attributions.csv.zip",
"compression": "zip",
"bytes": 1093
},
{
"name": "articles",
"description": "Published articles whose authors had downloaded and referenced a data package from GBIF containing occurrences that are linked to collectors or determiners.",
"format": "csv",
"mediatype": "text/csv",
"encoding": "utf-8",
"profile": "tabular-data-resource",
"schema": {
"fields": [
{
"name": "id",
"type": "integer"
},
{
"name": "reference",
"type": "string",
"skos:exactMatch": "http://schema.org/name"
},
{
"name": "sameAs",
"type": "string",
"format": "uri",
"skos:exactMatch": "http://schema.org/sameAs"
},
{
"name": "datasets",
"type": "array",
"format": "uri",
"skos:exactMatch": "http://schema.org/sameAs"
}
]
},
"primaryKey": "id",
"path": "https://bionomia.net/dataset/591c4da7-967c-4cad-ad60-b276e60fb4d2/articles.csv.zip",
"compression": "zip",
"bytes": 153
},
{
"name": "problem-determiner-dates",
"description": "Associated occurrence records whose dateIdentified are earlier than a determiner's birthDate or later than their deathDate.",
"format": "csv",
"mediatype": "text/csv",
"encoding": "utf-8",
"profile": "tabular-data-resource",
"schema": {
"fields": [
{
"name": "occurrence_id",
"type": "integer"
},
{
"name": "catalogNumber",
"type": "string",
"skos:exactMatch": "http://rs.tdwg.org/dwc/terms/catalogNumber"
},
{
"name": "user_id",
"type": "integer"
},
{
"name": "wikidata",
"type": "string"
},
{
"name": "birthDate",
"type": "date",
"skos:exactMatch": "https://schema.org/birthDate"
},
{
"name": "birthDatePrecision",
"type": "string",
"description": "Values are year, month, or day and indicate the precision of birthDate; portions of birthDate should be ignored below that of the birthDatePrecision."
},
{
"name": "deathDate",
"type": "date",
"skos:exactMatch": "https://schema.org/deathDate"
},
{
"name": "deathDatePrecision",
"type": "string",
"description": "Values are year, month, or day and indicate the precision of deathDate; portions of deathDate should be ignored below that of the deathDatePrecision."
},
{
"name": "dateIdentified",
"type": "string",
"skos:exactMatch": "http://rs.tdwg.org/dwc/terms/dateIdentified"
}
]
},
"foreignKeys": [
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"fields": "user_id",
"reference": {
"resource": "users",
"fields": "id"
}
},
{
"fields": "occurrence_id",
"reference": {
"resource": "occurrences",
"fields": "gbifID"
}
}
],
"path": "https://bionomia.net/dataset/591c4da7-967c-4cad-ad60-b276e60fb4d2/problem_determiner_dates.csv.zip",
"compression": "zip",
"bytes": 237
}
]
}