There is a newer version of the record available.

Published January 29, 2024 | Version v0.0.1
Software Open

Graph-based Nanopore Adaptive Sampling Typing (GNASTy)

  • 1. ROR icon European Bioinformatics Institute

Description

Scripts for a Graph-based Nanopore Adaptive Sampling tool, known as 'GNASTy' (Graph Nanopore Adaptive Sampling Typing, pronounced 'nasty'), which is a modification of Readfish. This repository contains code from the original Readfish tool from Payne et al. 2021 (available here: https://github.com/LooseLab/readfish, publication: https://www.nature.com/articles/s41587-020-00746-x). If you use this software, please cite the original Readfish paper.

Files

readfish-GraphAlignment-v0.0.1.zip

Files (1.4 MB)

Name Size Download all
md5:7e73960a86acc2125f5baa2788b476f5
1.4 MB Preview Download

Additional details

Related works

Is version of
Software: 10.1038/s41587-020-00746-x (DOI)