jifanli/metapop_article-v1.0.1.zip
jifanli-metapop_article-9ce75aa
.gitignore
440 Bytes
Makefile
1.6 kB
README.md
416 Bytes
benchmark_3
ar.rda
20.3 kB
iid.rda
36.6 kB
bib-metapop.bib
98.6 kB
ci_c.rds
543 Bytes
ci_uc.rds
579 Bytes
filter_tests
code10.sh
500 Bytes
filter_tests10.R
9.7 kB
filter_tests10.png
278.9 kB
li23Model
li23_spatPomp10v8.rda
68.8 kB
run_level_2
abf10v8.rda
10.8 kB
abfir10v8.rda
10.3 kB
bpf10v8.rda
1.2 kB
enkf10v8.rda
1.2 kB
girf10v8.rda
1.2 kB
pfilter10v8.rda
1.2 kB
results10v8.rda
9.0 kB
settings10v8.rda
539 Bytes
spatPomp10v8.rda
7.2 MB
ubf10v8.rda
10.8 kB
l8
README
258 Bytes
l7.rds
33.8 kB
l8.R
3.2 kB
out_3
l8.rds
33.8 kB
sessionInfo_l8.txt
1.6 kB
loglik_3
model2.rds
1.1 kB
ms.Rnw
51.3 kB
ms.pdf
183.6 kB
profile7
A_0
A_0.R
4.3 kB
A_0.png
111.8 kB
A_0.sbat
561 Bytes
A_02.R
4.3 kB
A_02.sbat
563 Bytes
README
50 Bytes
analysis.R
868 Bytes
out_3
profile_A_0.rds
39.4 kB
profile_A_02.rds
39.4 kB
sessionInfo_A_0.txt
1.8 kB
sessionInfo_A_02.txt
1.8 kB
profile_A_0_full.rds
57.5 kB
t1.rds
30.6 kB
Beta
Beta_af.R
4.3 kB
Beta_af.png
136.0 kB
Beta_af.sbat
566 Bytes
Beta_af2.R
4.4 kB
Beta_af2.sbat
568 Bytes
Beta_be.R
4.3 kB
Beta_be.png
122.4 kB
Beta_be.sbat
566 Bytes
Beta_be2.R
4.3 kB
Beta_be2.sbat
568 Bytes
README
106 Bytes
analysis.R
1.9 kB
out_3
profile_Beta_af.rds
39.5 kB
profile_Beta_af2.rds
39.5 kB
profile_Beta_be.rds
39.5 kB
profile_Beta_be2.rds
39.5 kB
sessionInfo_Beta_af.txt
1.8 kB
sessionInfo_Beta_af2.txt
1.8 kB
sessionInfo_Beta_be.txt
1.8 kB
sessionInfo_Beta_be2.txt
1.8 kB
profile_Beta_af_full.rds
57.1 kB
profile_Beta_be_full.rds
57.3 kB
t1.rds
30.6 kB
D
D.R
4.3 kB
D.png
129.9 kB
D.sbat
559 Bytes
D2.R
4.3 kB
D2.sbat
561 Bytes
README
40 Bytes
analysis.R
844 Bytes
out_3
profile_D.rds
39.0 kB
profile_D2.rds
39.1 kB
sessionInfo_D.txt
1.8 kB
sessionInfo_D2.txt
1.8 kB
profile_D_full.rds
56.8 kB
t1.rds
30.6 kB
E_0
E_0.R
4.3 kB
E_0.png
120.5 kB
E_0.sbat
561 Bytes
E_02.R
4.3 kB
E_02.sbat
563 Bytes
README
52 Bytes
analysis.R
879 Bytes
out_3
profile_E_0.rds
39.4 kB
profile_E_02.rds
39.4 kB
sessionInfo_E_0.txt
1.8 kB
sessionInfo_E_02.txt
1.8 kB
profile_E_0_full.rds
57.2 kB
t1.rds
30.6 kB
R0
R0_af.R
4.6 kB
R0_af.png
130.6 kB
R0_af.sbat
564 Bytes
R0_af2.R
4.6 kB
R0_af2.sbat
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R0_be.R
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R0_be.png
129.0 kB
R0_be.sbat
564 Bytes
R0_be2.R
4.6 kB
R0_be2.sbat
566 Bytes
README
94 Bytes
analysis.R
1.8 kB
out_3
profile_R0_af.rds
39.4 kB
profile_R0_af2.rds
39.4 kB
profile_R0_be.rds
39.4 kB
profile_R0_be2.rds
39.4 kB
sessionInfo_R0_af.txt
1.8 kB
sessionInfo_R0_af2.txt
1.8 kB
sessionInfo_R0_be.txt
1.8 kB
sessionInfo_R0_be2.txt
1.8 kB
profile_R0_af_full.rds
57.0 kB
profile_R0_be_full.rds
57.1 kB
t1.rds
30.6 kB
README
26 Bytes
Z
README
45 Bytes
Z.R
4.3 kB
Z.png
107.0 kB
Z.sbat
559 Bytes
Z2.R
4.3 kB
Z2.sbat
561 Bytes
analysis.R
843 Bytes
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profile_Z.rds
39.4 kB
profile_Z2.rds
39.4 kB
sessionInfo_Z.txt
1.8 kB
sessionInfo_Z2.txt
1.8 kB
profile_Z_full.rds
57.0 kB
t1.rds
30.6 kB
alpha
README
120 Bytes
alpha_af.R
4.4 kB
alpha_af.png
120.6 kB
alpha_af.sbat
568 Bytes
alpha_af2.R
4.4 kB
alpha_af2.sbat
570 Bytes
alpha_be.R
4.4 kB
alpha_be.png
122.7 kB
alpha_be.sbat
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alpha_be2.R
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alpha_be2.sbat
570 Bytes
analysis.R
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profile_alpha_af.rds
39.3 kB
profile_alpha_af2.rds
39.3 kB
profile_alpha_be.rds
39.3 kB
profile_alpha_be2.rds
39.3 kB
sessionInfo_alpha_af.txt
1.8 kB
sessionInfo_alpha_af2.txt
1.8 kB
sessionInfo_alpha_be.txt
1.8 kB
sessionInfo_alpha_be2.txt
1.8 kB
profile_alpha_af_full.rds
57.0 kB
profile_alpha_be_full.rds
53.2 kB
t1.rds
30.6 kB
mu
README
101 Bytes
analysis.R
1.8 kB
mu_af.R
4.3 kB
mu_af.png
107.9 kB
mu_af.sbat
565 Bytes
mu_af2.R
4.3 kB
mu_af2.sbat
567 Bytes
mu_be.R
4.3 kB
mu_be.png
113.0 kB
mu_be.sbat
565 Bytes
mu_be2.R
4.3 kB
mu_be2.sbat
567 Bytes
out_3
profile_mu_af.rds
39.4 kB
profile_mu_af2.rds
39.4 kB
profile_mu_be.rds
39.5 kB
profile_mu_be2.rds
39.5 kB
sessionInfo_mu_af.txt
1.8 kB
sessionInfo_mu_af2.txt
1.8 kB
sessionInfo_mu_be.txt
1.8 kB
sessionInfo_mu_be2.txt
1.8 kB
profile_mu_af_full.rds
57.1 kB
profile_mu_be_full.rds
57.3 kB
s4.rds
30.7 kB
sigma_SE
README
67 Bytes
analysis.R
934 Bytes
out_3
profile_sigma_SE.rds
39.4 kB
profile_sigma_SE2.rds
39.4 kB
sessionInfo_sigma_SE.txt
1.8 kB
sessionInfo_sigma_SE2.txt
1.8 kB
profile_sigma_SE_full.rds
57.2 kB
sigma_SE.R
4.4 kB
sigma_SE.png
134.0 kB
sigma_SE.sbat
568 Bytes
sigma_SE2.R
4.4 kB
sigma_SE2.sbat
570 Bytes
t1.rds
30.6 kB
tau
README
54 Bytes
analysis.R
869 Bytes
out_3
profile_tau.rds
39.4 kB
profile_tau2.rds
39.4 kB
sessionInfo_tau.txt
1.8 kB
sessionInfo_tau2.txt
1.8 kB
profile_tau_full.rds
56.9 kB
t1.rds
30.6 kB
tau.R
4.3 kB
tau.png
118.4 kB
tau.sbat
563 Bytes
tau2.R
4.3 kB
tau2.sbat
565 Bytes
theta
README
74 Bytes
analysis.R
895 Bytes
out_3
profile_theta.rds
39.4 kB
profile_theta2.rds
39.4 kB
sessionInfo_theta.txt
1.8 kB
sessionInfo_theta2.txt
1.8 kB
profile_theta_full.rds
57.1 kB
t1.rds
30.6 kB
theta.R
4.3 kB
theta.png
124.5 kB
theta.sbat
564 Bytes
theta2.R
4.3 kB
theta2.sbat
566 Bytes
profile9
A_0
A_0.R
4.3 kB
A_0.png
113.3 kB
A_0.sh
496 Bytes
A_02.R
4.3 kB
A_02.sh
492 Bytes
README
50 Bytes
analysis.R
868 Bytes
l8.rds
33.8 kB
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profile_A_0.rds
43.1 kB
profile_A_02.rds
43.1 kB
sessionInfo_A_0.txt
2.1 kB
sessionInfo_A_02.txt
2.1 kB
profile_A_0_full.rds
64.8 kB
Beta
Beta_af.R
4.3 kB
Beta_af.png
123.3 kB
Beta_af.sbat
566 Bytes
Beta_af2.R
4.3 kB
Beta_af2.sbat
568 Bytes
Beta_be.R
4.3 kB
Beta_be.png
118.9 kB
Beta_be.sh
492 Bytes
Beta_be2.R
4.3 kB
Beta_be2.sh
488 Bytes
README
108 Bytes
analysis.R
1.9 kB
l8.rds
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profile_Beta_af.rds
43.6 kB
profile_Beta_af2.rds
43.6 kB
profile_Beta_be.rds
43.2 kB
profile_Beta_be2.rds
43.2 kB
sessionInfo_Beta_af.txt
1.8 kB
sessionInfo_Beta_af2.txt
1.8 kB
sessionInfo_Beta_be.txt
2.1 kB
sessionInfo_Beta_be2.txt
2.1 kB
profile_Beta_af_full.rds
65.3 kB
profile_Beta_be_full.rds
64.9 kB
D
D_af.R
4.3 kB
D_af.png
114.3 kB
D_af.sh
480 Bytes
D_af2.R
4.3 kB
D_af2.sh
482 Bytes
D_be.R
4.3 kB
D_be.png
96.3 kB
D_be.sh
486 Bytes
D_be2.R
4.3 kB
D_be2.sh
482 Bytes
README
75 Bytes
analysis.R
1.8 kB
l8.rds
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profile_D_af.rds
43.0 kB
profile_D_af2.rds
43.1 kB
profile_D_be.rds
43.1 kB
profile_D_be2.rds
43.1 kB
sessionInfo_D_af.txt
2.1 kB
sessionInfo_D_af2.txt
2.1 kB
sessionInfo_D_be.txt
2.1 kB
sessionInfo_D_be2.txt
2.1 kB
profile_D_af_full.rds
64.7 kB
profile_D_be_full.rds
65.7 kB
E_0
E_0.R
4.3 kB
E_0.png
127.6 kB
E_0.sh
478 Bytes
E_02.R
4.3 kB
E_02.sh
480 Bytes
README
53 Bytes
analysis.R
869 Bytes
l8.rds
33.8 kB
out_3
profile_E_0.rds
43.5 kB
profile_E_02.rds
43.5 kB
sessionInfo_E_0.txt
2.1 kB
sessionInfo_E_02.txt
2.1 kB
profile_E_0_full.rds
65.2 kB
R0
R0_af.R
4.4 kB
R0_af.png
130.0 kB
R0_af.sh
482 Bytes
R0_af2.R
4.4 kB
R0_af2.sh
484 Bytes
R0_be.R
4.4 kB
R0_be.png
128.0 kB
R0_be.sh
488 Bytes
R0_be2.R
4.4 kB
R0_be2.sh
484 Bytes
README
87 Bytes
analysis.R
1.8 kB
l8.rds
33.8 kB
out_3
profile_R0_af.rds
43.5 kB
profile_R0_af2.rds
43.5 kB
profile_R0_be.rds
43.7 kB
profile_R0_be2.rds
43.6 kB
sessionInfo_R0_af.txt
2.1 kB
sessionInfo_R0_af2.txt
2.1 kB
sessionInfo_R0_be.txt
2.1 kB
sessionInfo_R0_be2.txt
2.1 kB
profile_R0_af_full.rds
56.8 kB
profile_R0_be_full.rds
67.3 kB
README
208 Bytes
Z
README
87 Bytes
Z_af.R
4.3 kB
Z_af.png
121.9 kB
Z_af.sh
480 Bytes
Z_af2.R
4.3 kB
Z_af2.sh
482 Bytes
Z_be.R
4.3 kB
Z_be.png
116.0 kB
Z_be.sh
486 Bytes
Z_be2.R
4.3 kB
Z_be2.sh
482 Bytes
analysis.R
1.8 kB
l8.rds
33.8 kB
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profile_Z_af.rds
43.1 kB
profile_Z_af2.rds
43.1 kB
profile_Z_be.rds
43.1 kB
profile_Z_be2.rds
43.1 kB
sessionInfo_Z_af.txt
2.1 kB
sessionInfo_Z_af2.txt
2.1 kB
sessionInfo_Z_be.txt
2.1 kB
sessionInfo_Z_be2.txt
2.1 kB
profile_Z_af_full.rds
65.0 kB
profile_Z_be_full.rds
65.0 kB
alpha
README
113 Bytes
alpha_af.R
4.4 kB
alpha_af.png
192.4 kB
alpha_af.sbat
568 Bytes
alpha_af2.R
4.4 kB
alpha_af2.sbat
570 Bytes
alpha_be.R
4.4 kB
alpha_be.png
128.4 kB
alpha_be.sh
506 Bytes
alpha_be2.R
4.4 kB
alpha_be2.sh
502 Bytes
analysis.R
1.9 kB
l8.rds
33.8 kB
out_3
profile_alpha_af.rds
43.3 kB
profile_alpha_af2.rds
43.4 kB
profile_alpha_be.rds
43.1 kB
profile_alpha_be2.rds
43.1 kB
sessionInfo_alpha_af.txt
1.8 kB
sessionInfo_alpha_af2.txt
1.8 kB
sessionInfo_alpha_be.txt
2.1 kB
sessionInfo_alpha_be2.txt
2.1 kB
profile_alpha_af_full.rds
65.2 kB
profile_alpha_be_full.rds
64.8 kB
mu
README
101 Bytes
analysis.R
1.8 kB
l8.rds
33.8 kB
mu_af.R
4.3 kB
mu_af.png
111.9 kB
mu_af.sbat
565 Bytes
mu_af2.R
4.3 kB
mu_af2.sbat
567 Bytes
mu_be.R
4.3 kB
mu_be.png
107.5 kB
mu_be.sh
488 Bytes
mu_be2.R
4.3 kB
mu_be2.sh
484 Bytes
out_3
profile_mu_af.rds
43.6 kB
profile_mu_af2.rds
43.6 kB
profile_mu_be.rds
43.2 kB
profile_mu_be2.rds
43.2 kB
sessionInfo_mu_af.txt
1.8 kB
sessionInfo_mu_af2.txt
1.8 kB
sessionInfo_mu_be.txt
2.1 kB
sessionInfo_mu_be2.txt
2.1 kB
profile_mu_af_full.rds
65.3 kB
profile_mu_be_full.rds
49.6 kB
sigma_SE
README
67 Bytes
analysis.R
934 Bytes
l8.rds
33.8 kB
out_3
profile_sigma_SE.rds
43.1 kB
profile_sigma_SE2.rds
43.1 kB
sessionInfo_sigma_SE.txt
2.1 kB
sessionInfo_sigma_SE2.txt
2.1 kB
profile_sigma_SE_full.rds
64.8 kB
sigma_SE.R
4.4 kB
sigma_SE.png
127.9 kB
sigma_SE.sh
488 Bytes
sigma_SE2.R
4.4 kB
sigma_SE2.sh
490 Bytes
tau
README
54 Bytes
analysis.R
889 Bytes
l8.rds
33.8 kB
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profile_tau.rds
43.1 kB
profile_tau2.rds
43.1 kB
sessionInfo_tau.txt
2.1 kB
sessionInfo_tau2.txt
2.1 kB
profile_tau_full.rds
56.3 kB
tau.R
4.3 kB
tau.png
126.9 kB
tau.sh
478 Bytes
tau2.R
4.3 kB
tau2.sh
480 Bytes
theta
README
76 Bytes
analysis.R
915 Bytes
l8.rds
33.8 kB
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profile_theta.rds
43.1 kB
profile_theta2.rds
43.1 kB
sessionInfo_theta.txt
2.1 kB
sessionInfo_theta2.txt
2.1 kB
profile_theta_full.rds
56.5 kB
theta.R
4.3 kB
theta.png
122.9 kB
theta.sh
482 Bytes
theta2.R
4.3 kB
theta2.sh
484 Bytes
r1
README
393 Bytes
analysis-c.R
1.5 kB
analysis-uc.R
2.0 kB
analysis.R
2.1 kB
code-uc.R
3.0 kB
code.R
3.1 kB
explore-uc.R
3.0 kB
explore.R
2.8 kB
out_c_2
ar.rda
142.9 kB
filters.rda
1.4 MB
out_uc_2
ar.rda
142.9 kB
filters.rda
1.4 MB
residual_time_plot.pdf
313.5 kB
s5
README
264 Bytes
out_3
s5.rds
30.8 kB
sessionInfo_s5.txt
1.6 kB
s4.rds
30.7 kB
s5.R
3.3 kB
s5.sbat
561 Bytes
si
Makefile
1.6 kB
lps
M.mat
15.6 MB
README
202 Bytes
lps.csv
22.6 kB
lps_simu.m
11.3 kB
pop.mat
3.2 kB
plot_3
li20.rda
2.1 MB
li20_plot.rda
8.2 MB
panel.rda
12.2 MB
panel2.rds
12.1 MB
percentile_df.rda
120.5 kB
si.Rnw
116.9 kB
si.pdf
4.4 MB
t1
README
69 Bytes
out_3
sessionInfo_t1.txt
1.6 kB
t1.rds
30.6 kB
profile_alpha_be_full.rds
56.9 kB
t1.R
3.3 kB
t1.sbat
561 Bytes