Snakemake rna-seq template

RNA-seq analysis with Snakemake

Snakemake is a workflow manager system for

creating reproducible and scalable pipelines.

This repository allows you to perform a *RNA-seq analysis*, from raw reads to differential expression and is customised

from this template by Johannes Köster.

Reads can be supplied either as single-end or paired-end and optionally with technical replicates.

Sequencing files from technical replicates are merged at the mapping step

See full description there https://gitlab.lcsb.uni.lu/aurelien.ginolhac/snakemake-rna-seq