Published October 19, 2023 | Version v1
Other Open

Metabarcoding data processing using dada2 - 16S

  • 1. ROR icon University of North Florida
  • 2. ROR icon Grand Valley State University

Description

Using the code in this file, we will process 16S metabarcoding data using the Dada2 pipeline. (DATA REDUCTION STAGE). Our goal is to use the DADA2 algorithm to assess read quality, denoise, and merge our sequences. Finally, we will assign our sequences to ASVs and assign these to taxonomy using DADA2 and a reference database.

Files

NextGenScript_16S.txt

Files (10.5 kB)

Name Size Download all
md5:33282fd5ca54168e342be271d06b5ef1
10.5 kB Preview Download

Additional details

Dates

Submitted
2023-10-18