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Published September 26, 2016 | Version v1
Figure Open

Figure 2 from: Abarenkov K, Adams RI, Irinyi L, Agan A, Ambrosio E, Antonelli A, Bahram M, Bengtsson-Palme J, Bok G, Cangren P, Coimbra V, Coleine C, Gustafsson C, He J, Hofmann T, Kristiansson E, Larsson E, Larsson T, Liu Y, Martinsson S, Meyer W, Panova M, Pombubpa N, Ritter C, Ryberg M, Svantesson S, Scharn R, Svensson O, Töpel M, Unterseher M, Visagie C, Wurzbacher C, Taylor AFS, Kõljalg U, Schriml L, Nilsson RH (2016) Annotating public fungal ITS sequences from the built environment according to the MIxS-Built Environment standard – a report from a May 23-24, 2016 workshop (Gothenburg, Sweden). MycoKeys 16: 1-15. https://doi.org/10.3897/mycokeys.16.10000

  • 1. University of Tartu, Tartu, Estonia
  • 2. University of California, Berkeley, United States of America
  • 3. Sydney Medical School-Westmead Hospital (Sidney), University of Sydney (Sidney) and Westmead Institute for Medical Research, Westmead, Australia
  • 4. University of Gothenburg and Gothenburg Botanical Garden, Gothenburg, Sweden
  • 5. University of Tartu (Tartu, Estonia) and Uppsala University, Uppsala, Sweden
  • 6. University of Gothenburg, Göteborg, Sweden
  • 7. SP Technical Research Institute of Sweden, Borås, Sweden
  • 8. Universidade Federal de Pernambuco (UFPE), Pernambuco, Brazil
  • 9. University of Tuscia, Viterbo, Italy
  • 10. South China Botanical Garden, The Chinese Academy of Sciences, Guangzhou, China
  • 11. Chalmers University of Technology, Göteborg, Sweden
  • 12. University of California Riverside, Riverside, United States of America
  • 13. Uppsala University, Uppsala, Sweden
  • 14. Ernst-Moritz-Arndt University Greifswald, Greifswald, Germany
  • 15. Agriculture and Agri-Food Canada and University of Ottawa, Ottawa, Canada
  • 16. The James Hutton Institute and University of Aberdeen, Aberdeen, United Kingdom
  • 17. University of Maryland School of Medicine, Baltimore, United States of America

Description

Figure 2 - Krona chart of the taxonomic affiliation of the BMS sequences down to order level. The Krona chart lists all annotated BMS sequences except those classified as Fungi sp. (36.4%) and those of non-fungal origin (0.9%). An interactive version of the Krona chart is provided as Suppl. material 3. The figure includes pre-existing data plus the data added during the workshop, such that these charts indicate the scientific state of ITS-based Sanger-derived sequencing of the built mycobiome as of spring 2016. Sequences that were not annotated with a single built environment-related term in the INSDC were not included in this effort, and are not represented in these charts.

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