Dataset Open Access

Dataset: Quantifying cell densities and biovolumes of phytoplankton communities and functional groups using scanning flow cytometry, machine learning and unsupervised clustering

Thomas, Mridul K.; Fontana, Simone; Reyes, Marta; Pomati, Francesco


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  <identifier identifierType="DOI">10.5281/zenodo.977773</identifier>
  <creators>
    <creator>
      <creatorName>Thomas, Mridul K.</creatorName>
      <givenName>Mridul K.</givenName>
      <familyName>Thomas</familyName>
      <affiliation>Centre for Ocean Life, Technical University of Denmark, Kemitorvet, Building 202, 2800 Kgs. Lyngby, Denmark</affiliation>
    </creator>
    <creator>
      <creatorName>Fontana, Simone</creatorName>
      <givenName>Simone</givenName>
      <familyName>Fontana</familyName>
      <affiliation>Swiss Federal Institute for Forest, Snow and Landscape Research (WSL), Zürcherstrasse 111, 8903 Birmensdorf</affiliation>
    </creator>
    <creator>
      <creatorName>Reyes, Marta</creatorName>
      <givenName>Marta</givenName>
      <familyName>Reyes</familyName>
      <affiliation>Dept. of Aquatic Ecology, Eawag: Swiss Federal Institute of Aquatic Science and Technology, Überlandstrasse 133, 8600 Dübendorf, Switzerland</affiliation>
    </creator>
    <creator>
      <creatorName>Pomati, Francesco</creatorName>
      <givenName>Francesco</givenName>
      <familyName>Pomati</familyName>
      <affiliation>Dept. of Aquatic Ecology, Eawag: Swiss Federal Institute of Aquatic Science and Technology, Überlandstrasse 133, 8600 Dübendorf, Switzerland</affiliation>
    </creator>
  </creators>
  <titles>
    <title>Dataset: Quantifying cell densities and biovolumes of phytoplankton communities and functional groups using scanning flow cytometry, machine learning and unsupervised clustering</title>
  </titles>
  <publisher>Zenodo</publisher>
  <publicationYear>2017</publicationYear>
  <subjects>
    <subject>phytoplankton, flow cytometry, automated monitoring, traits</subject>
  </subjects>
  <dates>
    <date dateType="Issued">2017-09-28</date>
  </dates>
  <resourceType resourceTypeGeneral="Dataset"/>
  <alternateIdentifiers>
    <alternateIdentifier alternateIdentifierType="url">https://zenodo.org/record/977773</alternateIdentifier>
  </alternateIdentifiers>
  <relatedIdentifiers>
    <relatedIdentifier relatedIdentifierType="DOI" relationType="IsVersionOf">10.5281/zenodo.977772</relatedIdentifier>
  </relatedIdentifiers>
  <rightsList>
    <rights rightsURI="https://creativecommons.org/licenses/by/4.0/legalcode">Creative Commons Attribution 4.0 International</rights>
    <rights rightsURI="info:eu-repo/semantics/openAccess">Open Access</rights>
  </rightsList>
  <descriptions>
    <description descriptionType="Abstract">&lt;p&gt;This dataset contains all relevant data for the manuscript (in submission) "&lt;em&gt;Quantifying cell densities and biovolumes of phytoplankton communities and functional groups using scanning flow cytometry, machine learning and unsupervised clustering&lt;/em&gt;".&lt;/p&gt;

&lt;p&gt;Code written to analyse this dataset (which may be adapted for other flow cytometry datasets) is found at https://zenodo.org/record/999747&lt;/p&gt;

&lt;p&gt;--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------&lt;/p&gt;

&lt;p&gt;Naming convention for raw flow cytometry data files (located in /Script 3. Generating raw data subset/input/):&lt;/p&gt;

&lt;p&gt;[Allparameters] _ [Year] - [Month] - [Date]  [Hour] [u] [Minute] _ [Depth]&lt;/p&gt;

&lt;p&gt;e.g: Allparameters_2014-07-31 08u08_1.0m&lt;/p&gt;

&lt;p&gt;The date, time and depth indicate the location and time at which the measurement was taken.&lt;/p&gt;</description>
    <description descriptionType="Other">We are presently using this dataset for multiple publications that are in preparation. To avoid duplicated efforts, we request that you contact the authors if you are interested in pursuing a research project with this data. 

Contact information: 
Mridul K. Thomas - mrit {at} dtu {dot} dk
Francesco Pomati - francesco {dot} pomati {at} eawag {dot} ch</description>
  </descriptions>
</resource>
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