Dataset Open Access

Test dataset for ProteinID

Vaudel, Marc; Martens, Lennart; Sigloch, Florian Christoph


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  <identifier identifierType="DOI">10.5281/zenodo.892005</identifier>
  <creators>
    <creator>
      <creatorName>Vaudel, Marc</creatorName>
      <givenName>Marc</givenName>
      <familyName>Vaudel</familyName>
      <affiliation>PROBE Dept of Biomedicine</affiliation>
    </creator>
    <creator>
      <creatorName>Martens, Lennart</creatorName>
      <givenName>Lennart</givenName>
      <familyName>Martens</familyName>
      <affiliation>Department of Biochemistry, Ghent University, Ghent, Belgium. Department of Medical Protein Research, VIB, Ghent, Belgium.</affiliation>
    </creator>
    <creator>
      <creatorName>Sigloch, Florian Christoph</creatorName>
      <givenName>Florian Christoph</givenName>
      <familyName>Sigloch</familyName>
      <affiliation>Center for Biological Systems Analysis, University of Freiburg, Habsburger Str. 49, 79104 Freiburg, Germany.</affiliation>
    </creator>
  </creators>
  <titles>
    <title>Test dataset for ProteinID</title>
  </titles>
  <publisher>Zenodo</publisher>
  <publicationYear>2017</publicationYear>
  <subjects>
    <subject>proteomics</subject>
    <subject>test data</subject>
  </subjects>
  <dates>
    <date dateType="Issued">2017-04-15</date>
  </dates>
  <resourceType resourceTypeGeneral="Dataset"/>
  <alternateIdentifiers>
    <alternateIdentifier alternateIdentifierType="url">https://zenodo.org/record/892005</alternateIdentifier>
  </alternateIdentifiers>
  <relatedIdentifiers>
    <relatedIdentifier relatedIdentifierType="DOI" relationType="IsSupplementTo">10.1002/pmic.201300488</relatedIdentifier>
    <relatedIdentifier relatedIdentifierType="URL" relationType="HasPart">https://www.ebi.ac.uk/pride/archive/projects/PXD000674</relatedIdentifier>
    <relatedIdentifier relatedIdentifierType="URL" relationType="IsSupplementTo">https://www.ebi.ac.uk/pride/archive/projects/PXD000674</relatedIdentifier>
    <relatedIdentifier relatedIdentifierType="DOI" relationType="IsVersionOf">10.5281/zenodo.796184</relatedIdentifier>
  </relatedIdentifiers>
  <rightsList>
    <rights rightsURI="https://creativecommons.org/licenses/by/4.0/legalcode">Creative Commons Attribution 4.0 International</rights>
    <rights rightsURI="info:eu-repo/semantics/openAccess">Open Access</rights>
  </rightsList>
  <descriptions>
    <description descriptionType="Abstract">&lt;p&gt;This dataset can be used as an input for peptide and protein ID workflows. It was originally published in Vaudel et al., 2014, Proteomics (https://www.ncbi.nlm.nih.gov/pubmed/24678044).&lt;/p&gt;

&lt;p&gt;A detailed description of the "qExactive01819" sample can be found on PRIDE (https://www.ebi.ac.uk/pride/archive/projects/PXD000674).&lt;/p&gt;

&lt;p&gt;The provided FASTA protein database is the uniprot human reference database with the Crap database added. The second database additionally contains the most common mycoplasma contaminants. Both databases are also available with reversed peptide sequences attached as decoys (tag: "DECOY_"). A detailed description of the provided databases can be found here: https://galaxyproject.github.io/training-material/topics/proteomics/tutorials/database-handling/tutorial.html&lt;/p&gt;</description>
    <description descriptionType="Other">{"references": ["Drexler and Uphoff, Cytotechnology, 2002. doi:10.1023/A:1022913015916"]}</description>
  </descriptions>
</resource>
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