justincbagley/PIrANHA: PIrANHA version 0.1.6.1

<a href="http://imgur.com/qLNrh5B"><img src="http://i.imgur.com/qLNrh5B.png" title="source: Justin C. Bagley" width=60% height=60% align="center" /></a>

Scripts for file processing and analysis in phylogenomics & phylogeography

This is PIrANHA (PhylogenetIcs ANd pHylogeogrAphy) v0.1.6.1, a new development release (minor version, partly stable and partly unstable) of PIrANHA that provides a number of utility scripts and pipelines for file processing and analysis in phylogenetics and phylogeography. PIrANHA tools are largely interactive shell scripts focusing on 1) analyses of DNA sequence data and SNPs or RAD loci generated from massively parallel sequencing runs on ddRAD-seq genomic libraries (e.g. Peterson et al. 2012), and 2) automating running these software programs on the user's personal machine (e.g. MAGNET pipeline and pyRAD2PartitionFinder scripts) or a remote supercomputer machine, and then conducting post-processing of the results.

The current release, PIrANHA v0.1.6.1, updates the README and documentation for the repository.