Zenodo DOI: 10.5281/zenodo.890000

"A communal catalogue reveals Earth’s multiscale microbial diversity", Thompson et al., Nature, 2017, http://doi.org/10.1038/nature24621.

  • Study metadata
    • emp_studies.csv
  • Sample metadata
    • emp_qiime_mapping_release1_20170912.tsv
    • emp_qiime_mapping_qc_filtered_20170912.tsv
    • emp_qiime_mapping_subset_10k_20170912.tsv
    • emp_qiime_mapping_subset_5k_20170912.tsv
    • emp_qiime_mapping_subset_2k_20170912.tsv
  • Observation tables (.biom) and summaries (.summary.txt)
    • emp_deblur_90bp.release1.biom
    • emp_deblur_90bp.release1.summary.txt
    • emp_deblur_100bp.release1.biom
    • emp_deblur_100bp.release1.summary.txt
    • emp_deblur_150bp.release1.biom
    • emp_deblur_150bp.release1.summary.txt
    • emp_cr_gg_13_8.release1.biom
    • emp_cr_gg_13_8.release1.summary.txt
    • emp_cr_silva_16S_123.release1.biom
    • emp_cr_silva_16S_123.release1.summary.txt
    • emp_or_gg_13_8.no_sample_singletons.biom
    • emp_or_gg_13_8.no_sample_singletons.summary.txt
  • Observation information (sequences, trees, taxonomies)
    • emp_observation_info_deblur.tar.gz
    • emp_observation_info_cr_gg.tar.gz
    • emp_observation_info_cr_silva.tar.gz
    • emp_observation_info_or_gg.tar.gz
  • Alpha-diversity results
    • emp_alpha_div.tar.gz
  • Beta-diversity results
    • emp_deblur_unifrac_dist.tar.gz
    • emp_deblur_unifrac_pc.tar.gz
    • emp_deblur_unifrac_emperor.tar.gz
    • emp_90_gg_1k_unweighted_unifrac.txt.gz
    • emp_150_gg_1k_unweighted_unifrac.txt.gz
  • Observation summaries for trading cards
    • otu_summary.emp_deblur_90bp.subset_2k.rare_5000.tsv
    • otu_summary_no_chl.emp_deblur_90bp.subset_2k.rare_5000.tsv
    • emp_2k_subset_blank_stats.tsv
  • Redbiom database
    • emp_redbiom.rdb