Journal article Open Access

A communal catalogue reveals Earth's multiscale microbial diversity

Thompson, Luke R.; Sanders, Jon G.; McDonald, Daniel; Amir, Amnon; Navas, Jose; Kopylova, Evguenia; Ackermann, Gail


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  <dc:creator>Thompson, Luke R.</dc:creator>
  <dc:creator>Sanders, Jon G.</dc:creator>
  <dc:creator>McDonald, Daniel</dc:creator>
  <dc:creator>Amir, Amnon</dc:creator>
  <dc:creator>Navas, Jose</dc:creator>
  <dc:creator>Kopylova, Evguenia</dc:creator>
  <dc:creator>Ackermann, Gail</dc:creator>
  <dc:date>2017-11-01</dc:date>
  <dc:description>Overview

This archive contains data and results from the meta-analysis of the Earth Microbiome Project (EMP) 16S Release 1, which was published in Nature (http://doi.org/10.1038/nature24621). The files include EMP-wide study and sample metadata, observation tables and information (trees and taxonomies), alpha- and beta-diversity results, observation summaries for trading cards, and the Redbiom database at time of publication.

Files

* Study metadata
    - emp_studies.csv
* Sample metadata
    - emp_qiime_mapping_release1_20170912.tsv
    - emp_qiime_mapping_qc_filtered_20170912.tsv
    - emp_qiime_mapping_subset_10k_20170912.tsv
    - emp_qiime_mapping_subset_5k_20170912.tsv
    - emp_qiime_mapping_subset_2k_20170912.tsv
* Observation tables (.biom) and summaries (.summary.txt)
    - emp_deblur_90bp.release1.biom
    - emp_deblur_90bp.release1.summary.txt
    - emp_deblur_100bp.release1.biom
    - emp_deblur_100bp.release1.summary.txt
    - emp_deblur_150bp.release1.biom
    - emp_deblur_150bp.release1.summary.txt
    - emp_cr_gg_13_8.release1.biom
    - emp_cr_gg_13_8.release1.summary.txt
    - emp_cr_silva_16S_123.release1.biom
    - emp_cr_silva_16S_123.release1.summary.txt
    - emp_or_gg_13_8.no_sample_singletons.biom
    - emp_or_gg_13_8.no_sample_singletons.summary.txt
* Observation information (sequences, trees, taxonomies)
    - emp_observation_info_deblur.tar.gz
    - emp_observation_info_cr_gg.tar.gz
    - emp_observation_info_cr_silva.tar.gz
    - emp_observation_info_or_gg.tar.gz
* Alpha-diversity results
    - emp_alpha_div.tar.gz
* Beta-diversity results
    - emp_deblur_unifrac_dist.tar.gz
    - emp_deblur_unifrac_pc.tar.gz
    - emp_deblur_unifrac_emperor.tar.gz
    - emp_90_gg_1k_unweighted_unifrac.txt.gz
    - emp_150_gg_1k_unweighted_unifrac.txt.gz
* Observation summaries for trading cards
    - otu_summary.emp_deblur_90bp.subset_2k.rare_5000.tsv
    - otu_summary_no_chl.emp_deblur_90bp.subset_2k.rare_5000.tsv
    - emp_2k_subset_blank_stats.tsv
* Redbiom database
    - emp_redbiom.rdb</dc:description>
  <dc:identifier>https://zenodo.org/record/890000</dc:identifier>
  <dc:identifier>10.5281/zenodo.890000</dc:identifier>
  <dc:identifier>oai:zenodo.org:890000</dc:identifier>
  <dc:language>eng</dc:language>
  <dc:relation>doi:10.1038/nature24621</dc:relation>
  <dc:relation>doi:10.5281/zenodo.889999</dc:relation>
  <dc:rights>info:eu-repo/semantics/openAccess</dc:rights>
  <dc:rights>https://creativecommons.org/licenses/by/4.0/</dc:rights>
  <dc:source>Nature</dc:source>
  <dc:subject>microbiome</dc:subject>
  <dc:subject>amplicon sequencing</dc:subject>
  <dc:subject>environmental microbiology</dc:subject>
  <dc:title>A communal catalogue reveals Earth's multiscale microbial diversity</dc:title>
  <dc:type>info:eu-repo/semantics/article</dc:type>
  <dc:type>publication-article</dc:type>
</oai_dc:dc>
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