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A communal catalogue reveals Earth's multiscale microbial diversity

Thompson, Luke R.; Sanders, Jon G.; McDonald, Daniel; Amir, Amnon; Navas, Jose; Kopylova, Evguenia; Ackermann, Gail


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{
  "@context": "https://schema.org/", 
  "@id": "https://doi.org/10.5281/zenodo.890000", 
  "@type": "ScholarlyArticle", 
  "creator": [
    {
      "@id": "https://orcid.org/0000-0002-3911-1280", 
      "@type": "Person", 
      "affiliation": "University of California San Diego", 
      "name": "Thompson, Luke R."
    }, 
    {
      "@id": "https://orcid.org/0000-0001-6077-4014", 
      "@type": "Person", 
      "affiliation": "University of California San Diego", 
      "name": "Sanders, Jon G."
    }, 
    {
      "@id": "https://orcid.org/0000-0003-0876-9060", 
      "@type": "Person", 
      "affiliation": "University of California San Diego", 
      "name": "McDonald, Daniel"
    }, 
    {
      "@type": "Person", 
      "affiliation": "University of California San Diego", 
      "name": "Amir, Amnon"
    }, 
    {
      "@id": "https://orcid.org/0000-0003-4595-920X", 
      "@type": "Person", 
      "affiliation": "University of California San Diego", 
      "name": "Navas, Jose"
    }, 
    {
      "@type": "Person", 
      "affiliation": "University of California San Diego", 
      "name": "Kopylova, Evguenia"
    }, 
    {
      "@id": "https://orcid.org/0000-0002-3901-4931", 
      "@type": "Person", 
      "affiliation": "University of California San Diego", 
      "name": "Ackermann, Gail"
    }
  ], 
  "datePublished": "2017-11-01", 
  "description": "<p><strong>Overview</strong></p>\n\n<p>This archive contains data and results from the meta-analysis of the Earth Microbiome Project (EMP) 16S Release 1, which was published in <em>Nature</em> (http://doi.org/10.1038/nature24621). The files include\u00a0EMP-wide study and sample metadata, observation tables and information (trees and taxonomies), alpha- and beta-diversity results, observation summaries for trading cards, and\u00a0the Redbiom database at time of publication.</p>\n\n<p><strong>Files</strong></p>\n\n<p>* Study metadata<br>\n\u00a0 \u00a0 - emp_studies.csv<br>\n* Sample metadata<br>\n\u00a0 \u00a0 - emp_qiime_mapping_release1_20170912.tsv<br>\n\u00a0 \u00a0 - emp_qiime_mapping_qc_filtered_20170912.tsv<br>\n\u00a0 \u00a0 - emp_qiime_mapping_subset_10k_20170912.tsv<br>\n\u00a0 \u00a0 - emp_qiime_mapping_subset_5k_20170912.tsv<br>\n\u00a0 \u00a0 - emp_qiime_mapping_subset_2k_20170912.tsv<br>\n* Observation tables (.biom) and summaries (.summary.txt)<br>\n\u00a0 \u00a0 - emp_deblur_90bp.release1.biom<br>\n\u00a0 \u00a0 - emp_deblur_90bp.release1.summary.txt<br>\n\u00a0 \u00a0 - emp_deblur_100bp.release1.biom<br>\n\u00a0 \u00a0 - emp_deblur_100bp.release1.summary.txt<br>\n\u00a0 \u00a0 - emp_deblur_150bp.release1.biom<br>\n\u00a0 \u00a0 - emp_deblur_150bp.release1.summary.txt<br>\n\u00a0 \u00a0 - emp_cr_gg_13_8.release1.biom<br>\n\u00a0 \u00a0 - emp_cr_gg_13_8.release1.summary.txt<br>\n\u00a0 \u00a0 - emp_cr_silva_16S_123.release1.biom<br>\n\u00a0 \u00a0 - emp_cr_silva_16S_123.release1.summary.txt<br>\n\u00a0 \u00a0 - emp_or_gg_13_8.no_sample_singletons.biom<br>\n\u00a0 \u00a0 - emp_or_gg_13_8.no_sample_singletons.summary.txt<br>\n* Observation information (sequences, trees, taxonomies)<br>\n\u00a0 \u00a0 - emp_observation_info_deblur.tar.gz<br>\n\u00a0 \u00a0 - emp_observation_info_cr_gg.tar.gz<br>\n\u00a0 \u00a0 - emp_observation_info_cr_silva.tar.gz<br>\n\u00a0 \u00a0 - emp_observation_info_or_gg.tar.gz<br>\n* Alpha-diversity results<br>\n\u00a0 \u00a0 - emp_alpha_div.tar.gz<br>\n* Beta-diversity results<br>\n\u00a0 \u00a0 - emp_deblur_unifrac_dist.tar.gz<br>\n\u00a0 \u00a0 - emp_deblur_unifrac_pc.tar.gz<br>\n\u00a0 \u00a0 - emp_deblur_unifrac_emperor.tar.gz<br>\n\u00a0 \u00a0 - emp_90_gg_1k_unweighted_unifrac.txt.gz<br>\n\u00a0 \u00a0 - emp_150_gg_1k_unweighted_unifrac.txt.gz<br>\n* Observation summaries for trading cards<br>\n\u00a0 \u00a0 - otu_summary.emp_deblur_90bp.subset_2k.rare_5000.tsv<br>\n\u00a0 \u00a0 - otu_summary_no_chl.emp_deblur_90bp.subset_2k.rare_5000.tsv<br>\n\u00a0 \u00a0 - emp_2k_subset_blank_stats.tsv<br>\n* Redbiom database<br>\n\u00a0 \u00a0 - emp_redbiom.rdb</p>", 
  "headline": "A communal catalogue reveals Earth's multiscale microbial diversity", 
  "identifier": "https://doi.org/10.5281/zenodo.890000", 
  "image": "https://zenodo.org/static/img/logos/zenodo-gradient-round.svg", 
  "inLanguage": {
    "@type": "Language", 
    "alternateName": "eng", 
    "name": "English"
  }, 
  "keywords": [
    "microbiome", 
    "amplicon sequencing", 
    "environmental microbiology"
  ], 
  "license": "https://creativecommons.org/licenses/by/4.0/", 
  "name": "A communal catalogue reveals Earth's multiscale microbial diversity", 
  "url": "https://zenodo.org/record/890000"
}
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