886508
doi
10.5281/zenodo.886508
oai:zenodo.org:886508
user-eu
Bierkens, Mariska
NKI
Hansson, Matthias
ErasmusMC
Klein, Stefan
ErasmusMC
Peelen, Sjaak
Lygature
CORBEL Robust data upload procedures for biosample data and molecular profiling data
Boiten, Jan-Willem
Lygature
info:eu-repo/semantics/openAccess
Creative Commons Attribution 4.0 International
https://creativecommons.org/licenses/by/4.0/legalcode
Data curation
Data modeling
Data upload
<p>The core of the CORBEL common IT framework for genomics and imaging studies in biomarker research consists of the tranSMART (data integration and browsing platform), cBioportal (patient-level genomics platform) and XNAT (image archive platform) solutions. Loading existing project data into these platforms requires some level of data curation and transformation. This is particularly true for tranSMART, which is suited to handle a wide range of data types but also requires careful data modeling of those data before loading. The present document describes a detailed set of guidelines how to execute those data curation and modeling steps for each of the supported data types in tranSMART, cBioportal, and XNAT. It is partially based on previous work in the Dutch TraIT platform which was applied to the CORBEL use cases. Some practical lessons learned from those use cases, in particular the IMI APPROACH project, are given as well.</p>
Zenodo
2017-09-06
info:eu-repo/semantics/report
886507
user-eu
award_title=Coordinated Research Infrastructures Building Enduring Life-science services; award_number=654248; award_identifiers_scheme=url; award_identifiers_identifier=https://cordis.europa.eu/projects/654248; funder_id=00k4n6c32; funder_name=European Commission;
1579542370.119818
1175511
md5:63d8b1ab0abb9a8648ce5b4b422a5784
https://zenodo.org/records/886508/files/CORBEL_D3.9_Robust upload procedures_August-2017.pdf
public
10.5281/zenodo.886507
isVersionOf
doi