Published August 16, 2017
| Version v1.0
Software
Open
lulab/RBPgroup: RBPgroup
Description
To define a unified, confident binding sites for the RNA Binding Proteins (RBPs), we developed a non-negative matrix factorization (NMF) method, RBPgroup.
RBPgroup classifies RBPs and related RNA binding sites into co-binding groups. The idea behind this is that the co-binding of multiple RBPs in a RBP complex (i.e. HNRNP splicing complex) would generate more confident binding sites. To realize this idea, we developed a fine-tuned quality control pipeline followed by NMF, which allowed one RBP grouped into different clusters. We adapted this soft-clustering method because one RBP could co-bind with different co-factors to play different regulatory roles.
Files
lulab/RBPgroup-v1.0.zip
Files
(487.9 kB)
Name | Size | Download all |
---|---|---|
md5:748c5faf17332f04d33c08e406f88474
|
487.9 kB | Preview Download |
Additional details
Related works
- Is supplement to
- https://github.com/lulab/RBPgroup/tree/v1.0 (URL)