Software Open Access
Farrell, Patrick E.; Hake, Johan E.; Funke, Simon W.; Rognes, Marie E.
This file contains supplementary code for the paper "Automated
adjoints of coupled PDE-ODE systems" by P. E. Farrell, J. E. Hake,
S. W. Funke and M. E. Rognes.
This research is supported by a Center of Excellence grant awarded to
the Center for Biomedical Computing at Simula Research Laboratory from
the Research Council of Norway, by EPSRC grants EP/K030930/1 and
EP/M011151/1, a NOTUR grant NN9316K and the generous support of Sir
Michael Moritz and Harriet Heyman.
The code relies on a working installation of the FEniCS and
dolfin-adjoint softwares and the cbcbeat module, all available in the
- FEniCS: www.fenicsproject.org, version 2017.1 (or later perhaps)
- dolfin-adjoint: www.dolfin-adjoint.org, version compatible with the above
- cbcbeat: www.bitbucket.org/meg/cbcbeat, version compatible with the abov