Software Open Access


Robin Betz

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    <subfield code="a">molecular dynamics, charmm, amber, lipid</subfield>
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    <subfield code="u">Stanford University</subfield>
    <subfield code="a">Robin Betz</subfield>
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    <subfield code="a">Dabble</subfield>
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    <subfield code="a">GNU General Public License v2.0 only</subfield>
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    <subfield code="a">&lt;p&gt;Dabble is a tool for building membrane protein systems. The ultimate goal of the project is to create an easy to use, one stop tool for system construction and parameterization.&lt;/p&gt;

&lt;p&gt;Some uses for Dabble:&lt;/p&gt;

	&lt;li&gt;Prepare membrane protein systems by inserting them into a membrane&lt;/li&gt;
	&lt;li&gt;Prepare solvated proteins by adding water&lt;/li&gt;
	&lt;li&gt;Add ions to neutralize and/or to desired concentration&lt;/li&gt;
	&lt;li&gt;Parameterize with CHARMM or AMBER parameter sets&lt;/li&gt;
	&lt;li&gt;Outputs files for simulation with AMBER or CHARMM&lt;/li&gt;
	&lt;li&gt;Automatic detection of post-translational modifications&lt;/li&gt;
	&lt;li&gt;Modified amino acids made easy&lt;/li&gt;
	&lt;li&gt;Ligands made easy! No more messing with atom names.&lt;/li&gt;

&lt;p&gt;Dabble can use CHARMM or AMBER parameters, and generate input files for simulating in NAMD, CHARMM, Anton, or Desmond. While Dabble can be run from the command-line, it also provides a powerful API for building and parameterizing systems.&lt;/p&gt;

&lt;p&gt;Dabble's full documentation is available at;/p&gt;</subfield>
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