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Dabble

Robin Betz


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{
  "@context": "https://schema.org/", 
  "@id": "https://doi.org/10.5281/zenodo.836914", 
  "@type": "SoftwareSourceCode", 
  "codeRepository": "https://github.com/Eigenstate/dabble/tree/v2.6.3", 
  "creator": [
    {
      "@type": "Person", 
      "affiliation": "Stanford University", 
      "name": "Robin Betz"
    }
  ], 
  "datePublished": "2017-08-01", 
  "description": "<p>Dabble is a tool for building membrane protein systems. The ultimate goal of the project is to create an easy to use, one stop tool for system construction and parameterization.</p>\n\n<p>Some uses for Dabble:</p>\n\n<ul>\n\t<li>Prepare membrane protein systems by inserting them into a membrane</li>\n\t<li>Prepare solvated proteins by adding water</li>\n\t<li>Add ions to neutralize and/or to desired concentration</li>\n\t<li>Parameterize with CHARMM or AMBER parameter sets</li>\n\t<li>Outputs files for simulation with AMBER or CHARMM</li>\n\t<li>Automatic detection of post-translational modifications</li>\n\t<li>Modified amino acids made easy</li>\n\t<li>Ligands made easy! No more messing with atom names.</li>\n</ul>\n\n<p>Dabble can use CHARMM or AMBER parameters, and generate input files for simulating in NAMD, CHARMM, Anton, or Desmond. While Dabble can be run from the command-line, it also provides a powerful API for building and parameterizing systems.</p>\n\n<p>Dabble's full documentation is available at http://dabble.robinbetz.com</p>", 
  "identifier": "https://doi.org/10.5281/zenodo.836914", 
  "keywords": [
    "molecular dynamics, charmm, amber, lipid"
  ], 
  "license": "http://www.opensource.org/licenses/GPL-2.0", 
  "name": "Dabble", 
  "url": "https://zenodo.org/record/836914", 
  "version": "v2.6.3"
}
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