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Dabble

Robin Betz


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{
  "DOI": "10.5281/zenodo.836914", 
  "abstract": "<p>Dabble is a tool for building membrane protein systems. The ultimate goal of the project is to create an easy to use, one stop tool for system construction and parameterization.</p>\n\n<p>Some uses for Dabble:</p>\n\n<ul>\n\t<li>Prepare membrane protein systems by inserting them into a membrane</li>\n\t<li>Prepare solvated proteins by adding water</li>\n\t<li>Add ions to neutralize and/or to desired concentration</li>\n\t<li>Parameterize with CHARMM or AMBER parameter sets</li>\n\t<li>Outputs files for simulation with AMBER or CHARMM</li>\n\t<li>Automatic detection of post-translational modifications</li>\n\t<li>Modified amino acids made easy</li>\n\t<li>Ligands made easy! No more messing with atom names.</li>\n</ul>\n\n<p>Dabble can use CHARMM or AMBER parameters, and generate input files for simulating in NAMD, CHARMM, Anton, or Desmond. While Dabble can be run from the command-line, it also provides a powerful API for building and parameterizing systems.</p>\n\n<p>Dabble's full documentation is available at http://dabble.robinbetz.com</p>", 
  "author": [
    {
      "family": "Robin Betz"
    }
  ], 
  "id": "836914", 
  "issued": {
    "date-parts": [
      [
        2017, 
        8, 
        1
      ]
    ]
  }, 
  "publisher": "Zenodo", 
  "title": "Dabble", 
  "type": "article", 
  "version": "v2.6.3"
}
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