Installation

Seq2science is most easily installed using the Anaconda environment manager. To do this, first install Anaconda and then use it to install seq2science:

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# get the latest anaconda env manager
wget https://github.com/conda-forge/miniforge/releases/\
latest/download/Mambaforge-Linux-x86_64.sh -O mambaforge.sh

# install mambaforge,
# make sure to say *yes* when asked to initialize mambaforge
bash mambaforge.sh

# to finalize the installation close and re-open your current shell
exit

# now open a new terminal

# add the channels/repositories that conda can look for packages
conda config --add channels bioconda
conda config --add channels conda-forge

# make a new environment called seq2science which
# has seq2science installed
mamba create -n seq2science seq2science

# activate the environment
conda activate seq2science
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