Preview

nglview-v0.6.5.zip

arose-nglview-d74a8fc
- .coveragerc 193 Bytes
- .gitattributes 33 Bytes
- .github
  - ISSUE_TEMPLATE.md 338 Bytes
- .gitignore 128 Bytes
- .travis.yml 1.1 kB
- CHANGELOG.md 4.2 kB
- DEVELOPMENT.md 2.5 kB
- Dockerfile 913 Bytes
- LICENSE 1.2 kB
- MANIFEST.in 324 Bytes
- README.md 13.5 kB
- circle.yml 157 Bytes
- devtools
  - build_docker.sh 43 Bytes
  - circleci
    - install_miniconda.sh 1.0 kB
  - gifipy.py 249 Bytes
  - install-dev.sh 184 Bytes
  - make_test_js.py 2.1 kB
  - recipe
    - build.sh 44 Bytes
    - meta.yaml 482 Bytes
    - post-link.sh 106 Bytes
  - travis-ci
    - clone_nbtest.sh 54 Bytes
    - conda-recipe
      - build.sh 96 Bytes
      - meta.yaml 531 Bytes
    - coveralls 261 Bytes
    - install_chrome.sh 558 Bytes
    - install_nglview.sh 601 Bytes
    - run_tests.sh 487 Bytes
    - setup_env.sh 1.4 kB
- doc
  - FAQ.md 758 Bytes
  - README.md 139 Bytes
  - interface_classes.md 3.1 kB
- examples
  - README.md 1.4 kB
  - customize_color.md 346 Bytes
  - extra
    - README.md 45 Bytes
    - bionano.ipynb 6.1 MB
    - example_bokeh_residue_distance.ipynb 44.7 kB
    - images
      - README.md 7 Bytes
      - bokeh.png 189.1 kB
  - images
    - bionano.png 4.0 MB
    - dark_theme.md 24 Bytes
    - dark_theme.png 211.5 kB
    - display_ccp4_file.md 44 Bytes
    - display_ccp4_file.png 464.2 kB
    - display_gui.md 24 Bytes
    - display_gui.png 243.0 kB
    - jupyterlab_three_views.png 947.3 kB
    - mdanalysis.gif 12.7 MB
    - mdtraj.gif 6.2 MB
    - membrane.gif 24.1 MB
    - nanotube_dna_translocating.gif 5.1 MB
    - nglview_gui.png 1.8 MB
    - nglview_jupyterlab.png 202.8 kB
    - parmed.gif 4.6 MB
    - two_screens.png 631.4 kB
    - viewer_pop_up.md 36 Bytes
    - viewer_pop_up.png 168.2 kB
  - jupyterlab.md 45 Bytes
  - mdanalysis.md 37 Bytes
  - mdtraj.md 29 Bytes
  - notebooks
    - export_image.ipynb 4.9 kB
    - mdtraj.ipynb 72 Bytes
    - representations_and_selection_language.ipynb 2.9 MB
    - trajectory_2.ipynb 1.5 MB
    - using_two_screens.ipynb 1.2 kB
    - view_trajectory.ipynb 1.4 MB
  - parmed.md 29 Bytes
  - parmed_minimization.md 106 Bytes
  - pytraj.md 31 Bytes
  - sandbox
    - ambermd
      - ambermd_view.ipynb 3.8 kB
      - md.in 278 Bytes
      - min.rst7 1.2 kB
      - peptide.top 22.0 kB
  - user_examples.md 115 Bytes
  - users
    - ase.md 330 Bytes
- js
  - .eslintrc 328 Bytes
  - README.md 171 Bytes
  - package.json 1.1 kB
  - src
    - __init__.py 0 Bytes
    - embed.js 455 Bytes
    - extension.js 619 Bytes
    - index.js 503 Bytes
    - labplugin.js 450 Bytes
    - widget_ngl.js 33.6 kB
  - test
    - mocha.opts 41 Bytes
    - test_widget.js 71 Bytes
  - webpack.config.js 2.5 kB
- nglview
  - __init__.py 907 Bytes
  - __main__.py 81 Bytes
  - _version.py 18.6 kB
  - adaptor.py 10.5 kB
  - base_adaptor.py 3.1 kB
  - color.py 218 Bytes
  - config.py 18 Bytes
  - contrib
    - __init__.py 0 Bytes
    - movie.py 6.7 kB
  - datafiles
    - .md_1u19.xtc_offsets.pkl 1.7 kB
    - __init__.py 319 Bytes
    - md_1u19.gro 382.8 kB
    - md_1u19.pdb 438.4 kB
    - md_1u19.traj 311.0 kB
    - md_1u19.trr 3.4 MB
    - md_1u19.xtc 1.1 MB
    - md_1u19.xtc.offsets 571 Bytes
  - default.py 162 Bytes
  - interpolate.py 515 Bytes
  - layout.py 2.7 kB
  - parameters.py 740 Bytes
  - player.py 36.6 kB
  - remote_thread.py 1.6 kB
  - representation.py 5.0 kB
  - sandbox
    - __init__.py 0 Bytes
    - amber.py 2.4 kB
    - base.py 282 Bytes
  - scripts
    - __init__.py 0 Bytes
    - app.py 1.1 kB
    - cmd_example.py 589 Bytes
    - nglview.py 9.3 kB
    - nglview_main.js 428 Bytes
  - shape.py 1.3 kB
  - show.py 7.8 kB
  - stage.py 318 Bytes
  - static
    - extension.js 2.1 kB
    - index.js 1.7 MB
    - index.js.map 2.0 MB
  - staticlab
    - nglview-js-widgets.bundle.js 6.2 MB
    - nglview-js-widgets.bundle.js.manifest 76.1 kB
  - tests
    - .coveragerc 470 Bytes
    - data
      - rho.pdb 4.2 MB
      - tc5b.parm 152.5 kB
      - tc5b.ref.crd 11.1 kB
      - tc5b.x 74.0 kB
      - tz2.pdb 476.2 kB
      - tz2.single.pdb 18.1 kB
      - tz2_2.pdb.gz 99.5 kB
      - volmap.dx 6.4 MB
    - js
      - test.js 7.3 kB
    - make_dummy_comm.py 1.2 kB
    - notebooks
      - 1crn_point.ipynb 2.9 MB
      - DPPC.ipynb 4.0 MB
      - FileStructure.ipynb 1.1 kB
      - README.md 146 Bytes
      - add_structure.ipynb 1.7 kB
      - add_trajectory.ipynb 4.2 kB
      - add_trajectory_and_structure.ipynb 1.1 kB
      - add_trajectory_and_then_another_trajectory.ipynb 778.3 kB
      - apbs_1crn.ipynb 1.1 MB
      - api
        
        binary_vs_base64.ipynb 3.6 kB
        
        render_image.ipynb 1.9 kB
        
        save_image.png 1.3 MB
        
        test_2_widget_views.ipynb 1.5 kB
        
        test_2_widget_views_fist_time_loaded.ipynb 1.9 kB
        
        test_add_shape.ipynb 1.4 kB
        
        test_add_structure_then_trajectory.ipynb 1.4 kB
        
        test_auto_detect_pytraj_mdtraj_mdanalysis_parmed.ipynb 4.0 MB
        
        test_automatically_added_attributes_0.ipynb 4.1 kB
        
        test_callbacks.ipynb 4.3 kB
        
        test_component_dropdown_options.ipynb 1.9 kB
        
        test_component_names.ipynb 1.7 kB
        
        test_detach.ipynb 1.6 kB
        
        test_no_gui_demo.ipynb 829 Bytes
        
        test_removing_all_comopnents_and_clear_all_info.ipynb 2.4 kB
        
        test_representation_for_small_peptide.ipynb 441.7 kB
        
        test_simple_gui_by_clicking.ipynb 5.4 kB
        
        test_sync_n_components.ipynb 1.6 kB
        
        test_update_representation_shortcut.ipynb 1.8 kB
        
        test_view_trajectory.ipynb 81.9 kB
      - automatically_added_attributes_1.ipynb 1.3 kB
      - bfactors.ipynb 3.6 MB
      - camelize_parameters.ipynb 4.7 MB
      - capsid.ipynb 4.6 MB
      - change_player_count.ipynb 1.3 kB
      - clear_representation.ipynb 980 Bytes
      - closest_waters.ipynb 1.8 kB
      - compute_average_time.ipynb 29.5 kB
      - download_image.ipynb 1.2 kB
      - dummy.ipynb 1.5 kB
      - dummy_rotation.ipynb 1.9 kB
      - experiment
        
        test_ngl_HBox_and_padding.ipynb 1.2 kB
        
        test_use_hbox.ipynb 4.3 kB
      - export_image.ipynb 175.8 kB
      - extra
        
        README.md 86 Bytes
        
        example_mbuild.ipynb 2.5 MB
        
        movie_making.ipynb 3.2 MB
        
        nanotube_dna_translocating.ipynb 1.7 kB
        
        render_multiple_frames.ipynb 4.2 kB
        
        show_rdkit.ipynb 886.5 kB
        
        test_out_of_core_trajectory_with_transformation.ipynb 1.7 kB
      - get_parameters.ipynb 3.5 kB
      - getitem.ipynb 2.4 MB
      - high_quality_static_display.ipynb 2.5 MB
      - init_representations.ipynb 1.2 kB
      - known_bugs
        
        layout.ipynb 1.9 kB
      - loadFile.ipynb 2.7 kB
      - loadFile_cpp4.ipynb 715.6 kB
      - load_ccp4_2.ipynb 6.3 MB
      - load_dx.ipynb 1.4 kB
      - moljump.png 387.2 kB
      - my_movie.gif 3.7 MB
      - no_sync_frame_big_trajectory.ipynb 8.4 MB
      - playing_trick.ipynb 1.7 kB
      - remote_call-complist.ipynb 1.6 kB
      - remote_call-complist.png 204.0 kB
      - remote_call.ipynb 1.3 kB
      - remote_call.png 94.5 kB
      - remove_by_component_id.ipynb 5.9 kB
      - remove_component.ipynb 818.8 kB
      - remove_representations_by_name.ipynb 5.8 MB
      - remove_representations_by_name_shortcut.ipynb 4.1 kB
      - repr_alias.ipynb 1.2 kB
      - repr_alias.png 235.3 kB
      - representations.ipynb 1.1 kB
      - rho.png 1.0 MB
      - rho_protein.ipynb 3.5 MB
      - set_representations.ipynb 2.1 kB
      - show_only.ipynb 4.1 MB
      - template.ipynb 650 Bytes
      - test_API_coordinates_dict.ipynb 4.4 kB
      - test_Shape.ipynb 280.5 kB
      - test_background.ipynb 2.4 MB
      - test_camelize.ipynb 1.5 MB
      - test_camera.ipynb 4.1 MB
      - test_clear_all_repr_gui_expect_empty_text.ipynb 1.6 kB
      - test_color_by.ipynb 2.1 kB
      - test_delay.ipynb 952 Bytes
      - test_display_player.ipynb 1.2 kB
      - test_drag_and_drop_file.ipynb 1.5 kB
      - test_draggable_notebook_and_widget.ipynb 26.3 kB
      - test_file_manager
        
        test_file_manager.ipynb 1.8 kB
        
        test_show_structure_file.ipynb 982 Bytes
      - test_fix_player_if_adding_single_struture_first.ipynb 3.1 kB
      - test_image_array.ipynb 985.4 kB
      - test_interpolate.ipynb 1.9 kB
      - test_js_clean_error_output.ipynb 2.2 kB
      - test_link_camera.ipynb 2.0 kB
      - test_link_player.ipynb 1.9 kB
      - test_load_binary_different_folder_ccp4.ipynb 1.3 kB
      - test_load_trajectory_single_frame.ipynb 1.0 kB
      - test_load_url.ipynb 4.6 MB
      - test_mda_analysis.png 106.1 kB
      - test_mdanalysis.ipynb 1.6 kB
      - test_no_player_with_single_structure.ipynb 1.9 kB
      - test_notebook_command_on_widget.ipynb 943 Bytes
      - test_orthographic_camera_jump.ipynb 7.2 MB
      - test_parmed_single_model.ipynb 362.6 kB
      - test_picked.ipynb 1.5 kB
      - test_refresh_render.ipynb 3.1 kB
      - test_render_image_widget.ipynb 24.8 kB
      - test_replicatecell_pytraj.ipynb 1.7 kB
      - test_representation_control.ipynb 25.0 kB
      - test_setIPythonLikeCell.ipynb 1.1 kB
      - test_show_pdbid.ipynb 3.4 kB
      - test_show_text.ipynb 2.9 kB
      - test_simpletraj.ipynb 1.6 kB
      - test_spin_on_off.ipynb 1.9 kB
      - test_superpose.ipynb 2.4 MB
      - test_theme.ipynb 24.4 kB
      - test_unitcell.ipynb 1.9 kB
      - test_viewerControls.ipynb 1.3 kB
      - time_base64_single_vs_binary_single.ipynb 2.2 kB
      - timing_base64_vs_binary_explicit_loop.ipynb 3.1 kB
      - timing_send_data.ipynb 5.1 kB
      - trajlist_mdanalysis.ipynb 6.0 kB
      - trajlist_mdtraj.ipynb 1.8 kB
      - trajlist_parmed.ipynb 2.4 kB
      - trajlist_pytraj.ipynb 2.8 kB
      - trajlist_simpletraj.ipynb 1.9 kB
      - two_screens.ipynb 848 Bytes
      - two_screens.png 2.6 MB
      - tz2.pdb 4.8 MB
      - unsync_camera.ipynb 2.4 kB
    - test_cli.py 2.5 kB
    - test_docs.py 891 Bytes
    - test_movie_maker.py 1.5 kB
    - test_show.py 629 Bytes
    - test_utils.py 5.7 kB
    - test_widget.py 28.5 kB
    - utils.py 3.6 kB
  - theme
    - __init__.py 87 Bytes
    - oceans16.css 27.0 kB
    - theme.py 1.2 kB
  - utils
    - __init__.py 170 Bytes
    - js_utils.py 4.4 kB
    - py_utils.py 6.3 kB
    - widget_utils.py 472 Bytes
  - viewer_control.py 2.2 kB
  - widget.py 46.9 kB
  - widget_box.py 1.5 kB
- nglview.gif 12.2 MB
- nglview.png 212.5 kB
- nightwatch.json 1.1 kB
- setup.cfg 364 Bytes
- setup.py 8.2 kB
- talks.md 406 Bytes
- versioneer.py 68.6 kB