"id","pmid","type","authors","title","journal","year","vol","pages","centers","pdb_ids"
"2906","27750371","structure","Sachleben JR, Adhikari AN, Gawlak G, Hoey RJ, Liu G, Joachimiak A, Montelione GT, Sosnick TR, Koide S","Aromatic Claw: A new fold with high aromatic content that evades structural prediction.","Protein Science","2016","","","NESG",""
"2905","27626386","structure","Bhardwaj G, Mulligan VK, Bahl CD, Gilmore JM, Harvey PJ, Cheneval O, Buchko GW, Pulavarti SV, Kaas Q, Eletsky A, Huang PS, Johnsen WA, Greisen PJ, Rocklin GJ, Song Y, Linsky TW, Watkins A, Rettie SA, Xu X, Carter LP, Bonneau R, Olson JM, Coutsias E, Correnti CE, Szyperski T, Craik DJ, Baker D","Accurate de novo design of hyperstable constrained peptides.","Nature","2016","","","NESG",""
"2885","27101811","function","Filippova EV, Kieser KJ, Luan CH, Wawrzak Z, Kiryukhina O, Rubin EJ, Anderson WF","Crystal structures of the transpeptidase domain of the Mycobacterium tuberculosis penicillin-binding protein PonA1 reveal potential mechanisms of antibiotic resistance.","FEBS Journal","2016","283","2206-18","CSGID+MCSG",""
"2878","26829219","structure","Proudfoot A, Axelrod HL, Geralt M, Fletterick RJ, Yumoto F, Deacon AM, Elsliger MA, Wilson IA, Wüthrich K, Serrano P","Dlx5 homedomain/DNA complex; structure, binding and effect of mutations related to split-hand and foot malformation syndrome.","Journal of Molecular Biology","2016","428","1130-41","JCSG","4rdu"
"2890","26760206","function","Boël G, Letso R, Neely H, Price WN, Wong KH, Su M, Luff JD, Valecha M, Everett JK, Acton TB, Xiao R, Montelione GT, Aalberts DP, Hunt JF","Codon influence on protein expression in E. coli correlates with mRNA levels.","Nature","2016","529","358-63","NESG",""
"2874","26749007","structure","Mohanty B, Geralt M, Wüthrich K, Serrano P","NMR reveals structural rearrangements associated to substrate insertion in nucleotide-adding enzymes.","Protein Science","2016","25","917-25","JCSG","2la3"
"2873","26712279","structure","Martin BT, Serrano P, Geralt M, Wüthrich K","Nuclear Magnetic Resonance Structure of a Novel Globular Domain in RBM10 Containing OCRE, the Octamer Repeat Sequence Motif.","Structure","2016","24","158-64","JCSG","2mxw"
"2872","26650892","structure","Bhowmik S, Chiu HP, Jones DH, Chiu HJ, Miller MD, Xu Q, Farr CL, Ridlon JM, Wells JE, Elsliger MA, Wilson IA, Hylemon PB, Lesley SA","Structure and Functional Characterization of a Bile Acid 7α Dehydratase BaiE in Secondary Bile Acid Synthesis.","Proteins","2015","84","316-31","JCSG","4l8p 4l8o 4leh 4n3v"
"2868","26438537","structure","Chang C, Tesar C, Li X, Kim Y, Rodionov DA, Joachimiak A","A novel transcriptional regulator of L-arabinose utilization in human gut bacteria.","Nucleic Acids Research","2015","43","10546-59","MCSG","5bs6 5dd4 5ddg 5deq"
"2869","26420866","structure","Lohman JR, Ma M, Osipiuk J, Nocek B, Kim Y, Chang C, Cuff M, Mack J, Bigelow L, Li H, Endres M, Babnigg G, Joachimiak A, Phillips GN, Shen B","Structural and evolutionary relationships of \"AT-less\" type I polyketide synthase ketosynthases.","Proceedings of the National Academy of Sciences of the United States of America","2015","112","12693-8","MCSG+NatPro","4qyr 4zdn 4tkt 4oqj 4wky 4ope 4opf"
"2866","26416531","structure","Sablin EP, Blind RD, Uthayaruban R, Chiu HJ, Deacon AM, Das D, Ingraham HA, Fletterick RJ","Structure of Liver Receptor Homolog-1 (NR5A2) with PIP3 hormone bound in the ligand binding pocket.","Journal of Structural Biology","2015","192","342-8","JCSG+STEMCELL","4rwv"
"2863","26374125","structure","Xu Q, Mengin-Lecreulx D, Liu XW, Patin D, Farr CL, Grant JC, Chiu HJ, Jaroszewski L, Knuth MW, Godzik A, Lesley SA, Elsliger MA, Deacon AM, Wilson IA","Insights into Substrate Specificity of NlpC/P60 Cell Wall Hydrolases Containing Bacterial SH3 Domains.","mBio","2015","6","e02327-14","JCSG","3m1u 3npf 3pvq 4r0k"
"2860","26240141","structure","Singh S, Michalska K, Bigelow L, Endres M, Kharel MK, Babnigg G, Yennamalli RM, Bingman CA, Joachimiak A, Thorson JS, Phillips GN","Structural Characterization of CalS8, a TDP-alpha-D-Glucose Dehydrogenase Involved in Calicheamicin Aminodideoxypentose Biosynthesis.","Journal of Biological Chemistry","2015","290","26249-58","MCSG+NatPro","4xrr 4xr9"
"2852","26200343","structure","Kang Y, Zhou XE, Gao X, He Y, Liu W, Ishchenko A, Barty A, White TA, Yefanov O, Han GW, Xu Q, de Waal PW, Ke J, Tan MH, Zhang C, Moeller A, West GM, Pascal BD, Van Eps N, Caro LN, Vishnivetskiy SA, Lee RJ, Suino-Powell KM, Gu X, Pal K, Ma J, Zhi X, Boutet S, Williams GJ, Messerschmidt M, Gati C, Zatsepin NA, Wang D, James D, Basu S, Roy-Chowdhury S, Conrad CE, Coe J, Liu H, Lisova S, Kupitz C, Grotjohann I, Fromme R, Jiang Y, Tan M, Yang H, Li J, Wang M, Zheng Z, Li D, Howe N, Zhao Y, Standfuss J, Diederichs K, Dong Y, Potter CS, Carragher B, Caffrey M, Jiang H, Chapman HN, Spence JC, Fromme P, Weierstall U, Ernst OP, Katritch V, Gurevich VV, Griffin PR, Hubbell WL, Stevens RC, Cherezov V, Melcher K, Xu HE","Crystal structure of rhodopsin bound to arrestin by femtosecond X-ray laser.","Nature","2015","523","561-7","GPCR+JCSG","4zwj"
"2840","26177955","structure","Dutta SK, Serrano P, Geralt M, Axelrod HL, Xu Q, Lesley SA, Godzik A, Deacon AM, Elsliger MA, Wilson IA, Wüthrich K","Cofactor-induced reversible folding of Flavodoxin-4 from Lactobacillus acidophilus.","Protein Science","2015","24","1600-8","JCSG","2mwm 3edo 2n1m"
"2849","26165597","structure","Aramini JM, Vorobiev SM, Tuberty LM, Janjua H, Campbell ET, Seetharaman J, Su M, Huang YJ, Acton TB, Xiao R, Tong L, Montelione GT","The RAS-Binding Domain of Human BRAF Protein Serine/Threonine Kinase Exhibits Allosteric Conformational Changes upon Binding HRAS.","Structure","2015","23","1382-93","NESG",""
"2861","26147956","function","Nakayasu ES, Sydor MA, Brown RN, Sontag RL, Sobreira TJ, Slysz GW, Humphrys DR, Skarina T, Onoprienko O, Di Leo R, Deatherage Kaiser BL, Li J, Ansong C, Cambronne ED, Smith RD, Savchenko A, Adkins JN","Identification of Salmonella Typhimurium Deubiquitinase SseL Substrates by Immunoaffinity Enrichment and Quantitative Proteomic Analysis.","Journal of proteome research","2015","14","4029-38","MCSG+PCSEP",""
"2862","26146184","structure","Quaile AT, Urbanus ML, Stogios PJ, Nocek B, Skarina T, Ensminger AW, Savchenko A","Molecular Characterization of LubX: Functional Divergence of the U-Box Fold by Legionella pneumophila.","Structure","2015","23","1459-69","MCSG","4wz2"
"2835","26110759","structure","Glaza P, Osipiuk J, Wenta T, Zurawa-Janicka D, Jarzab M, Lesner A, Banecki B, Skorko-Glonek J, Joachimiak A, Lipinska B","Structural and Functional Analysis of Human HtrA3 Protease and Its Subdomains.","PLoS ONE","2015","10","e0131142","MCSG","4ri0"
"2834","26071590","structure","Kuznetsova E, Nocek B, Brown G, Makarova KS, Flick R, Wolf YI, Khusnutdinova A, Evdokimova E, Jin K, Tan K, Hanson AD, Hasnain G, Zallot R, de Crecy-Lagard V, Babu M, Savchenko A, Joachimiak A, Edwards AM, Koonin EV, Yakunin AF","Functional Diversity of Haloacid Dehalogenase Superfamily Phosphatases from Saccharomyces cerevisiae: Biochemical, Structural, and Evolutionary Insights.","Journal of Biological Chemistry","2015","290","18678-98","MCSG","2qlt 3kc2 3rf6"
"2831","26062601","structure","Michalska K, Steen AD, Chhor G, Endres M, Webber AT, Bird J, Lloyd KG, Joachimiak A","New aminopeptidase from \"microbial dark matter\" archaeon.","FASEB Journal","2015","29","4071-9","MCSG","4pf1"
"2832","26061967","structure","Singh S, Kim Y, Wang F, Bigelow L, Endres M, Kharel MK, Babnigg G, Bingman CA, Joachimiak A, Thorson JS, Phillips GN","Structural characterization of AtmS13, a putative sugar aminotransferase involved in indolocarbazole AT2433 aminopentose biosynthesis.","Proteins","2015","83","1547-54","MCSG+NatPro","4rxk"
"2833","26057799","structure","Tan K, Johnson PM, Stols L, Boubion B, Eschenfeldt W, Babnigg G, Hayes CS, Joachimiak A, Goulding CW","The structure of a contact-dependent growth-inhibition (CDI) immunity protein from Neisseria meningitidis MC58.","Acta crystallographica. Section F, Structural biology communications","2015","71","702-9","MCSG+UC4CDI","4q7o"
"2836","26032645","structure","Fan Y, Tan K, Chhor G, Butler EK, Jedrzejczak RP, Missiakas D, Joachimiak A","EsxB, a secreted protein from Bacillus anthracis forms two distinct helical bundles.","Protein Science","2015","24","1389-400","MCSG","4j10 4j11 4iyh 4iyi 4j41 4j42 4j7j 4j7k"
"2897","25985179","structure","Webb BA, Forouhar F, Szu FE, Seetharaman J, Tong L, Barber DL","Structures of human phosphofructokinase-1 and atomic basis of cancer-associated mutations.","Nature","2015","523","111-4","NESG","3o8l 4pfk 6pfk 4xyj 4xyk"
"2842","25969444","structure","Aiyer S, Rossi P, Malani N, Schneider WM, Chandar A, Bushman FD, Montelione GT, Roth MJ","Structural and sequencing analysis of local target DNA recognition by MLV integrase.","Nucleic Acids Research","2015","43","5647-63","NESG",""
"2837","25928210","structure","Green KD, Biswas T, Chang C, Wu R, Chen W, Janes BK, Chalupska D, Gornicki P, Hanna PC, Tsodikov OV, Joachimiak A, Garneau-Tsodikova S","Biochemical and Structural Analysis of an Eis Family Aminoglycoside Acetyltransferase from Bacillus anthracis.","Biochemistry","2015","54","3197-206","MCSG","3n7z"
"2829","25913193","structure","Zhang H, Unal H, Gati C, Han GW, Liu W, Zatsepin NA, James D, Wang D, Nelson G, Weierstall U, Sawaya MR, Xu Q, Messerschmidt M, Williams GJ, Boutet S, Yefanov OM, White TA, Wang C, Ishchenko A, Tirupula KC, Desnoyer R, Coe J, Conrad CE, Fromme P, Stevens RC, Katritch V, Karnik SS, Cherezov V","Structure of the Angiotensin receptor revealed by serial femtosecond crystallography.","Cell","2015","161","833-44","GPCR+JCSG","4yay"
"2822","25826626","structure","Deller MC, Johnson HA, Miller MD, Spraggon G, Elsliger MA, Wilson IA, Lesley SA","Crystal Structure of a Two-Subunit TrkA Octameric Gating Ring Assembly.","PLoS ONE","2015","10","e0122512","JCSG","3l4b 2g1u 3jxo"
"2824","25825768","structure","Hayashi Y, Caboni L, Das D, Yumoto F, Clayton T, Deller MC, Nguyen P, Farr CL, Chiu HJ, Miller MD, Elsliger MA, Deacon AM, Godzik A, Lesley SA, Tomoda K, Conklin BR, Wilson IA, Yamanaka S, Fletterick RJ","Structure-based discovery of NANOG variant with enhanced properties to promote self-renewal and reprogramming of pluripotent stem cells.","Proceedings of the National Academy of Sciences of the United States of America","2015","112","4666-71","JCSG+STEMCELL","4rbo"
"2838","25687964","structure","Yu HY, Ziegelhoffer T, Osipiuk J, Ciesielski SJ, Baranowski M, Zhou M, Joachimiak A, Craig EA","Roles of intramolecular and intermolecular interactions in functional regulation of the Hsp70 J-protein co-chaperone Sis1.","Journal of Molecular Biology","2015","427","1632-43","MCSG","4rwu"
"2895","25678152","function","Petrey D, Chen TS, Deng L, Garzon JI, Hwang H, Lasso G, Lee H, Silkov A, Honig B","Template-based prediction of protein function.","Current Opinion in Structural Biology","2015","32","33-8","NESG",""
"2870","25595762","function","Alcaide M, Tchigvintsev A, Martínez-Martínez M, Popovic A, Reva ON, Lafraya Á, Bargiela R, Nechitaylo TY, Matesanz R, Cambon-Bonavita MA, Jebbar M, Yakimov MM, Savchenko A, Golyshina OV, Yakunin AF, Golyshin PN, Ferrer M","Identification and characterization of carboxyl esterases of gill chamber-associated microbiota in the deep-sea shrimp Rimicaris exoculata by using functional metagenomics.","Applied and environmental microbiology","2015","81","2125-36","MCSG",""
"2801","25592227","structure","Natarajan P, Punta M, Kumar A, Yeh AP, Godzik A, L A","Structure and sequence analyses of Bacteroides proteins BVU_4064 and BF1687 reveal presence of two novel predominantly-beta domains, predicted to be involved in lipid and cell surface interactions.","BMC Bioinformatics","2015","16","7","JCSG","3kog 3g3l"
"2802","25498144","structure","Stefely JA, Reidenbach AG, Ulbrich A, Oruganty K, Floyd BJ, Jochem A, Saunders JM, Johnson IE, Minogue CE, Wrobel RL, Barber GE, Lee D, Li S, Kannan N, Coon JJ, Bingman CA, Pagliarini DJ","Mitochondrial ADCK3 Employs an Atypical Protein Kinase-like Fold to Enable Coenzyme Q Biosynthesis.","Molecular Cell","2015","57","83-94","MPP","4ped"
"2793","25430057","note","Mohanty B, Serrano P, Geralt M, Wüthrich K","NMR structure determination of the protein NP_344798.1 as the first representative of Pfam PF06042.","Journal of Biomolecular NMR","2015","61","83-7","JCSG","2la3"
"2818","25406313","structure","Crowe AM, Stogios PJ, Casabon I, Evdokimova E, Savchenko A, Eltis LD","Structural and functional characterization of a ketosteroid transcriptional regulator of Mycobacterium tuberculosis.","Journal of Biological Chemistry","2015","290","872-82","MCSG","4w97"
"2810","25388768","structure","Rossi P, Shi L, Liu G, Barbieri CM, Lee HW, Grant TD, Luft JR, Xiao R, Acton TB, Snell EH, Montelione GT, Baker D, Lange OF, Sgourakis NG","A hybrid NMR/SAXS-based approach for discriminating oligomeric protein interfaces using Rosetta.","Proteins","2015","83","309-17","NESG",""
"2820","25354690","structure","Weerth RS, Michalska K, Bingman CA, Yennamalli RM, Li H, Jedrzejczak R, Wang F, Babnigg G, Joachimiak A, Thomas MG, Phillips GN","Structure of a cupin protein Plu4264 from Photorhabdus luminescens subsp. laumondii TTO1 at 1.35 Å resolution.","Proteins","2015","83","383-8","MCSG+NatPro","4mv2 4i4a"
"2899","25287625","structure","Murphy GS, Sathyamoorthy B, Der BS, Machius MC, Pulavarti SV, Szyperski T, Kuhlman B","Computational de novo design of a four-helix bundle protein--DND_4HB.","Protein Science","2015","24","434-45","NESG","21se 1rj1 2qsb 2zrr"
"2777","25200083","structure","Lemak S, Nocek B, Beloglazova N, Skarina T, Flick R, Brown G, Joachimiak A, Savchenko A, Yakunin AF","The CRISPR-associated Cas4 protein Pcal_0546 from Pyrobaculum calidifontis contains a [2Fe-2S] cluster: crystal structure and nuclease activity.","Nucleic Acids Research","2015","42","11144-55","MCSG","4r5q"
"2803","25495500","function","Alderson TR, Kim JH, Cai K, Frederick RO, Tonelli M, Markley JL","Correction to The Specialized Hsp70 (HscA) Interdomain Linker Binds to Its Nucleotide-Binding Domain and Stimulates ATP Hydrolysis in Both cis and trans Configurations.","Biochemistry","2014","53","7999","MPP",""
"2814","25470062","structure","von der Ecken J, Müller M, Lehman W, Manstein DJ, Penczek PA, Raunser S","Structure of the F-actin--tropomyosin complex.","Nature","2014","519","114-7","TEMIMPS","3j8a"
"2794","25465128","structure","Xu Q, Mengin-Lecreulx D, Patin D, Grant JC, Chiu HJ, Jaroszewski L, Knuth MW, Godzik A, Lesley SA, Elsliger MA, Deacon AM, Wilson IA","Structure-Guided Functional Characterization of DUF1460 Reveals a Highly Specific NlpC/P60 Amidase Family.","Structure","2014","22","1799-1809","JCSG","4h4j 4q68 4q5k"
"2903","25456817","structure","Lemak A, Wu B, Yee A, Houliston S, Lee HW, Gutmanas A, Fang X, Garcia M, Semesi A, Wang YX, Prestegard JH, Arrowsmith CH","Structural characterization of a flexible two-domain protein in solution using small angle X-ray scattering and NMR data.","Structure","2014","22","1862-74","NESG",""
"2806","25450980","function","Kim JH, Bothe JR, Alderson TR, Markley JL","Tangled web of interactions among proteins involved in iron-sulfur cluster assembly as unraveled by NMR, SAXS, chemical crosslinking, and functional studies.","Biochimica et biophysica acta","2014","1853","1416-1428","MPP",""
"2808","25383525","structure","Tran TH, Hsiao YS, Jo J, Chou CY, Dietrich LE, Walz T, Tong L","Structure and function of a single-chain, multi-domain long-chain acyl-CoA carboxylase.","Nature","2014","518","120-4","NESG",""
"2792","25372495","function","Alderson TR, Kim JH, Cai K, Frederick RO, Tonelli M, Markley JL","Specialized Hsp70 (HscA) interdomain linker binds to its nucleotide-binding domain and stimulates ATP hydrolysis in both cis and trans configurations.","Biochemistry","2014","53","7148-59","MPP",""
"2791","25349992","structure","Childers WS, Xu Q, Mann TH, Mathews II, Blair JA, Deacon AM, Shapiro L","Cell Fate Regulation Governed by a Repurposed Bacterial Histidine Kinase.","PLoS Biology","2014","12","e1001979","JCSG","4q20"
"2789","25339443","structure","Lohman DC, Forouhar F, Beebe ET, Stefely MS, Minogue CE, Ulbrich A, Stefely JA, Sukumar S, Luna-Sánchez M, Jochem A, Lew S, Seetharaman J, Xiao R, Wang H, Westphall MS, Wrobel RL, Everett JK, Mitchell JC, López LC, Coon JJ, Tong L, Pagliarini DJ","Mitochondrial COQ9 is a lipid-binding protein that associates with COQ7 to enable coenzyme Q biosynthesis.","Proceedings of the National Academy of Sciences of the United States of America","2014","111","E4697-705","MPP+NESG","4rhp"
"2799","25306867","note","Filippova EV, Tkaczuk KL, Chruszcz M, Xu X, Savchenko A, Edwards A, Minor W","Structural characterization of the putative ABC-type 2 transporter from Thermotoga maritima MSB8.","Journal of Structural and Functional Genomics","2014","15","215-22","MCSG","3cni"
"2786","25288771","structure","Blind RD, Sablin EP, Kuchenbecker KM, Chiu HJ, Deacon AM, Das D, Fletterick RJ, Ingraham HA","The signaling phospholipid PIP3 creates a new interaction surface on the nuclear receptor SF-1.","Proceedings of the National Academy of Sciences of the United States of America","2014","111","15054-9","JCSG+STEMCELL","4qjr 4qk4"
"2785","25286848","structure","Chiu HJ, Grant JC, Farr CL, Jaroszewski L, Knuth MW, Miller MD, Elsliger MA, Deacon AM, Godzik A, Lesley SA, Wilson IA","Structural analysis of arabinose-5-phosphate isomerase from Bacteroides fragilis and functional implications.","Acta Crystallographica Section D: Biological Crystallography","2014","70","2640-51","JCSG","3etn"
"2784","25270885","structure","Yang Y, Ramelot TA, Lee HW, Xiao R, Everett JK, Montelione GT, Prestegard JH, Kennedy MA","Solution structure of a C-terminal fragment (175-257) of CV_0373 protein from Chromobacterium violaceum adopts a winged helix-turn-helix (wHTH) fold.","Journal of Biomolecular NMR","2014","60","197-202","NESG",""
"2805","25216398","function","Khadria AS, Mueller BK, Stefely JA, Tan CH, Pagliarini DJ, Senes A","A Gly-zipper motif mediates homodimerization of the transmembrane domain of the mitochondrial kinase ADCK3.","Journal of the American Chemical Society","2014","136","14068-77","MPP",""
"2772","25197798","structure","Xu Q, Deller MC, Nielsen TK, Grant JC, Lesley SA, Elsliger MA, Deacon AM, Wilson IA","Structural Insights into the Recognition of Phosphopeptide by the FHA Domain of Kanadaptin.","PLoS ONE","2014","9","e107309","JCSG","4h87"
"2778","25192493","structure","Vassiliou S, Węglarz-Tomczak E, Berlicki L, Pawełczak M, Nocek B, Mulligan R, Joachimiak A, Mucha A","Structure-Guided, Single-Point Modifications in the Phosphinic Dipeptide Structure Yield Highly Potent and Selective Inhibitors of Neutral Aminopeptidases.","Journal of Medicinal Chemistry","2014","57","8140-51","MCSG","4quo"
"2771","25173411","structure","Yang Y, Ramelot TA, Lee HW, Xiao R, Everett JK, Montelione GT, Prestegard JH, Kennedy MA","Solution structure of the free Zα domain of human DLM-1 (ZBP1/DAI), a Z-DNA binding domain.","Journal of Biomolecular NMR","2014","60","189-95","NESG",""
"2774","25161314","structure","Desai KK, Bingman CA, Cheng CL, Phillips GN, Raines RT","Structure of RNA 3'-phosphate cyclase bound to substrate RNA.","RNA (New York, N.Y.)","2014","20","1560-6","NATPRO+NatPro",""
"2779","25148268","structure","Lu J, Wu R, Adkins JN, Joachimiak A, Glover JN","Crystal Structures of the F and pSLT Plasmid TraJ N-Terminal Regions Reveal Similar Homodimeric PAS Folds with Functional Interchangeability.","Biochemistry","2014","53","5810-9","MCSG+PCSEP","4ew7"
"2761","25086049","structure","Cao H, Walton JD, Brumm P, Phillips GN","Structure and substrate specificity of a eukaryotic fucosidase from Fusarium graminearum.","Journal of Biological Chemistry","2014","289","25624-38","NATPRO+NatPro",""
"2788","25080945","function","Kim JH, Alderson TR, Frederick RO, Markley JL","Nucleotide-dependent interactions within a specialized Hsp70/Hsp40 complex involved in Fe-S cluster biogenesis.","Journal of the American Chemical Society","2014","136","11586-9","MPP",""
"2758","25079510","structure","Elshahawi SI, Ramelot TA, Seetharaman J, Chen J, Singh S, Yang Y, Pederson K, Kharel MK, Xiao R, Lew S, Yennamalli RM, Miller MD, Wang F, Tong L, Montelione GT, Kennedy MA, Bingman CA, Zhu H, Phillips GN, Thorson JS","Structure-guided functional characterization of enediyne self-sacrifice resistance proteins CalU16 and CalU19.","ACS Chemical Biology","2014","9","2347-58","NatPro+NESG",""
"2787","25055301","function","Dai Z, Kim JH, Tonelli M, Ali IK, Markley JL","pH-induced conformational change of IscU at low pH correlates with protonation/deprotonation of two conserved histidine residues.","Biochemistry","2014","53","5290-7","MPP",""
"2780","25050442","structure","Lohman JR, Ma M, Cuff ME, Bigelow L, Bearden J, Babnigg G, Joachimiak A, Phillips GN, Shen B","The crystal structure of BlmI as a model for nonribosomal peptide synthetase peptidyl carrier proteins.","Proteins","2014","82","1210-8","MCSG+NatPro","4neo"
"2759","25044324","structure","Kumar A, Punta M, Axelrod HL, Das D, Farr CL, Grant JC, Chiu HJ, Miller MD, Coggill PC, Klock HE, Elsliger MA, Deacon AM, Godzik A, Lesley SA, Wilson IA","Crystal structures of three representatives of a new Pfam family PF14869 (DUF4488) suggest they function in sugar binding/uptake.","Protein Science","2014","23","1380-91","JCSG","4gzv 4iab 4i95"
"2775","25044180","function","Majorek KA, Kuhn ML, Chruszcz M, Anderson WF, Minor W","Double trouble-Buffer selection and His-tag presence may be responsible for nonreproducibility of biomedical experiments.","Protein Science","2014","23","1359-68","CSGID+MCSG",""
"2812","25018021","structure","Wu B, Peisley A, Tetrault D, Li Z, Egelman EH, Magor KE, Walz T, Penczek PA, Hur S","Molecular imprinting as a signal-activation mechanism of the viral RNA sensor RIG-I.","Molecular Cell","2014","55","511-23","TEMIMPS","3j6j 4p4h"
"2754","25010333","structure","Eletsky A, Michalska K, Houliston S, Zhang Q, Daily MD, Xu X, Cui H, Yee A, Lemak A, Wu B, Garcia M, Burnet MC, Meyer KM, Aryal UK, Sanchez O, Ansong C, Xiao R, Acton TB, Adkins JN, Montelione GT, Joachimiak A, Arrowsmith CH, Savchenko A, Szyperski T, Cort JR","Structural and Functional Characterization of DUF1471 Domains of Salmonella Proteins SrfN, YdgH/SssB, and YahO.","PLoS ONE","2014","9","e101787","MCSG+NESG+PCSEP","4evu"
"2781","25002538","structure","Banta AB, Cuff ME, Lin H, Myers AR, Ross W, Joachimiak A, Gourse RL","Structure of the RNA polymerase assembly factor Crl and identification of its interaction surface with sigma S.","Journal of Bacteriology","2014","196","3279-88","MCSG","3rpj"
"2739","24989974","structure","Pulavarti SV, Huang YJ, Pederson K, Acton TB, Xiao R, Everett JK, Prestegard JH, Montelione GT, Szyperski T","Solution NMR structures of immunoglobulin-like domains 7 and 12 from obscurin-like protein 1 contribute to the structural coverage of the human cancer protein interaction network.","Journal of Structural and Functional Genomics","2014","15","209-14","NESG",""
"2765","24981860","function","Marcon E, Ni Z, Pu S, Turinsky AL, Trimble SS, Olsen JB, Silverman-Gavrila R, Silverman-Gavrila L, Phanse S, Guo H, Zhong G, Guo X, Young P, Bailey S, Roudeva D, Zhao D, Hewel J, Li J, Gräslund S, Paduch M, Kossiakoff AA, Lupien M, Emili A, Wodak SJ, Greenblatt J","Human-chromatin-related protein interactions identify a demethylase complex required for chromosome segregation.","Cell reports","2014","8","297-310","CEBS",""
"2735","24941917","structure","Xu X, Pulavarti SV, Eletsky A, Huang YJ, Acton TB, Xiao R, Everett JK, Montelione GT, Szyperski T","Solution NMR structures of homeodomains from human proteins ALX4, ZHX1, and CASP8AP2 contribute to the structural coverage of the Human Cancer Protein Interaction Network.","Journal of Structural and Functional Genomics","2014","15","201-7","NESG",""
"2671","24938123","structure","Rigden DJ, Eberhardt RY, Gilbert HJ, Xu Q, Chang Y, Godzik A","Structure- and context-based analysis of the GxGYxYP family reveals a new putative class of Glycoside Hydrolase.","BMC Bioinformatics","2014","15","196","JCSG","3sgg"
"2669","24937088","structure","Lee W, Watters KE, Troupis AT, Reinen NM, Suchy FP, Moyer KL, Frederick RO, Tonelli M, Aceti DJ, Palmenberg AC, Markley JL","Solution Structure of the 2A Protease from a Common Cold Agent, Human Rhinovirus C2, Strain W12.","PLoS ONE","2014","9","e97198","MPP","2m5t"
"2782","24916958","structure","Michalska K, Chhor G, Clancy S, Jedrzejczak R, Babnigg G, Winans SC, Joachimiak A","RsaM: a transcriptional regulator of Burkholderia spp. with novel fold.","FEBS Journal","2014","281","4293-306","MCSG","4o2h"
"2766","24910098","function","Yasui N, Findlay GM, Gish GD, Hsiung MS, Huang J, Tucholska M, Taylor L, Smith L, Boldridge WC, Koide A, Pawson T, Koide S","Directed network wiring identifies a key protein interaction in embryonic stem cell differentiation.","Molecular Cell","2014","54","1034-41","CEBS",""
"2744","24904158","structure","Chang Y, Bruni R, Kloss B, Assur Z, Kloppmann E, Rost B, Hendrickson WA, Liu Q","Structural basis for a pH-sensitive calcium leak across membranes.","Science","2014","344","1131-5","NYCOMPS","4pgw 4pgv 4pgu 4pgs 4pgr"
"2662","24888348","structure","Fleischman NM, Das D, Kumar A, Xu Q, Chiu HJ, Jaroszewski L, Knuth MW, Klock HE, Miller MD, Elsliger MA, Godzik A, Lesley SA, Deacon AM, Wilson IA, Toney MD","Molecular characterization of novel pyridoxal-5'-phosphate-dependent enzymes from the human microbiome.","Protein Science","2014","23","1060-76","JCSG","3ele 3f0h 3g0t"
"2666","24847081","function","Gromek KA, Suchy FP, Meddaugh HR, Wrobel RL, LaPointe LM, Chu UB, Primm JG, Ruoho AE, Senes A, Fox BG","The oligomeric states of the purified sigma-1 receptor are stabilized by ligands.","Journal of Biological Chemistry","2014","289","20333-44","TMPC",""
"2659","24838125","structure","Serrano P, Geralt M, Mohanty B, Wüthrich K","NMR structures of α-proteobacterial ATPase-regulating ζ-subunits.","Journal of Molecular Biology","2014","426","2547-53","JCSG","2kzc 2ll0 2mdz"
"2667","24810328","function","Kim JH, Bothe JR, Frederick RO, Holder JC, Markley JL","Role of IscX in Iron-Sulfur Cluster Biogenesis in Escherichia coli.","Journal of the American Chemical Society","2014","136","7933-7942","MPP",""
"2783","24806882","structure","Nocek B, Starus A, Makowska-Grzyska M, Gutierrez B, Sanchez S, Jedrzejczak R, Mack JC, Olsen KW, Joachimiak A, Holz RC","The dimerization domain in DapE enzymes is required for catalysis.","PLoS ONE","2014","9","e93593","CSGID+MCSG","4op4"
"2732","24784220","structure","Zhang J, Zhang K, Gao ZG, Paoletta S, Zhang D, Han GW, Li T, Ma L, Zhang W, Müller CE, Yang H, Jiang H, Cherezov V, Katritch V, Jacobson KA, Stevens RC, Wu B, Zhao Q","Agonist-bound structure of the human P2Y12 receptor.","Nature","2014","509","119-22","GPCR","4py0 4pxz"
"2660","24742328","structure","Sheydina A, Eberhardt RY, Rigden DJ, Chang Y, Li Z, Zmasek CC, Axelrod HL, Godzik A","Structural genomics analysis of uncharacterized protein families overrepresented in human gut bacteria identifies a novel glycoside hydrolase.","BMC Bioinformatics","2014","15","112","JCSG","3kzs"
"2647","24722902","structure","Pulavarti SV, Eletsky A, Huang YJ, Acton TB, Xiao R, Everett JK, Montelione GT, Szyperski T","Polypeptide backbone, C(β) and methyl group resonance assignments of the 24 kDa plectin repeat domain 6 from human protein plectin.","Biomolecular NMR Assignments","2014","9","135-8","NESG",""
"2733","24670650","structure","Zhang K, Zhang J, Gao ZG, Zhang D, Zhu L, Han GW, Moss SM, Paoletta S, Kiselev E, Lu W, Fenalti G, Zhang W, Müller CE, Yang H, Jiang H, Cherezov V, Katritch V, Jacobson KA, Stevens RC, Wu B, Zhao Q","Structure of the human P2Y12 receptor in complex with an antithrombotic drug.","Nature","2014","509","115-8","GPCR","4ntj"
"2635","24667607","structure","Helander S, Montecchio M, Lemak A, Farès C, Almlöf J, Li Y, Yee A, Arrowsmith CH, Dhe-Paganon S, Sunnerhagen M","Basic Tilted Helix Bundle - A new protein fold in human FKBP25/FKBP3 and HectD1.","Biochemical and biophysical research communications","2014","447","26-31","NESG",""
"2762","24649856","structure","Wang F, Singh S, Zhang J, Huber TD, Helmich KE, Sunkara M, Hurley KA, Goff RD, Bingman CA, Morris AJ, Thorson JS, Phillips GN","Understanding molecular recognition of promiscuity of thermophilic methionine adenosyltransferase sMAT from Sulfolobus solfataricus.","FEBS Journal","2014","281","4224-39","NATPRO+NatPro","4hpv 4k0b 4l7i 4lz2"
"2629","24646163","structure","Das D, Murzin AG, Rawlings ND, Finn RD, Coggill P, Bateman A, Godzik A, Aravind L","Structure and computational analysis of a novel protein with metallopeptidase-like and circularly permuted winged-helix-turn-helix domains reveals a possible role in modified polysaccharide biosynthesis.","BMC Bioinformatics","2014","15","75","JCSG","3k9t"
"2628","24623816","function","Aiyer S, Swapna GV, Malani N, Aramini JM, Schneider WM, Plumb MR, Ghanem M, Larue RC, Sharma A, Studamire B, Kvaratskhelia M, Bushman FD, Montelione GT, Roth MJ","Altering murine leukemia virus integration through disruption of the integrase and BET protein family interaction.","Nucleic Acids Research","2014","42","5917-28","NESG",""
"2714","24613931","structure","Monk BC, Tomasiak TM, Keniya MV, Huschmann FU, Tyndall JD, O'Connell JD, Cannon RD, McDonald JG, Rodriguez A, Finer-Moore JS, Stroud RM","Architecture of a single membrane spanning cytochrome P450 suggests constraints that orient the catalytic domain relative to a bilayer.","Proceedings of the National Academy of Sciences of the United States of America","2014","111","3865-70","CSMP","4lxj 4k0f"
"2719","24609359","function","Karginov AV, Tsygankov D, Berginski M, Chu PH, Trudeau ED, Yi JJ, Gomez S, Elston TC, Hahn KM","Dissecting motility signaling through activation of specific Src-effector complexes.","Nature Chemical Biology","2014","10","286-90","CELLMAT",""
"2724","24606221","structure","Peng D, Kim JH, Kroncke BM, Law CL, Xia Y, Droege KD, Van Horn WD, Vanoye CG, Sanders CR","Purification and structural study of the voltage-sensor domain of the human KCNQ1 potassium ion channel.","Biochemistry","2014","53","2032-42","MPSbyNMR","2r9r 1ors 2a0l 1orq 2kyh 4dxw 3ryv 3beh"
"2709","24603153","structure","Wu H, Wang C, Gregory KJ, Han GW, Cho HP, Xia Y, Niswender CM, Katritch V, Meiler J, Cherezov V, Conn PJ, Stevens RC","Structure of a class C GPCR metabotropic glutamate receptor 1 bound to an allosteric modulator.","Science","2014","344","58-64","GPCR","4or2"
"2725","24593131","function","Martin-Garcia JM, Hansen DT, Zook J, Loskutov AV, Robida MD, Craciunescu FM, Sykes KF, Wachter RM, Fromme P, Allen JP","Purification and biophysical characterization of the CapA membrane protein FTT0807 from Francisella tularensis.","Biochemistry","2014","53","1958-70","MPID",""
"2621","24582435","structure","Aramini JM, Hamilton K, Ma LC, Swapna GV, Leonard PG, Ladbury JE, Krug RM, Montelione GT","(19)F NMR reveals multiple conformations at the dimer interface of the nonstructural protein 1 effector domain from influenza A virus.","Structure","2014","22","515-25","NESG",""
"2643","24573685","structure","Tan K, Chhor G, Binkowski TA, Jedrzejczak RP, Makowska-Grzyska M, Joachimiak A","Sensor domain of histidine kinase KinB of Pseudomonas - a helix-swapped dimer.","Journal of Biological Chemistry","2014","289","12232-44","MCSG","3kkb 3l34 4lle 4llc"
"2720","24570482","structure","Padlan CS, Malashkevich VN, Almo SC, Levy M, Brenowitz M, Girvin ME","An RNA aptamer possessing a novel monovalent cation-mediated fold inhibits lysozyme catalysis by inhibiting the binding of long natural substrates.","RNA (New York, N.Y.)","2014","20","447-61","IFN+NYSGRC","4m4o 4m6d"
"2634","24562475","note","Filippova E.V., Luan C.-H., Dunne S.F., Kiryukhina O., Minasov G., Shuvalova L., Anderson W.F.","Structural characterization of a hypothetical protein: a potential agent involved in trimethylamine metabolism in Catenulispora acidiphila","Journal of Structural and Functional Genomics","2014","15","33-40","MCSG","4h3u 4hvn"
"2716","24550478","structure","Singh H, Arentson BW, Becker DF, Tanner JJ","Structures of the PutA peripheral membrane flavoenzyme reveal a dynamic substrate-channeling tunnel and the quinone-binding site.","Proceedings of the National Academy of Sciences of the United States of America","2014","111","3389-94","NYSGRC","4nmf 4nme 4nmd 4nmc 4nmb 4nma 4nm9"
"2729","24530907","structure","Domingo Meza-Aguilar J, Fromme P, Torres-Larios A, Mendoza-Hernández G, Hernandez-Chiñas U, Arreguin-Espinosa de Los Monteros RA, Eslava Campos CA, Fromme R","X-ray crystal structure of the passenger domain of plasmid encoded toxin(Pet), an autotransporter enterotoxin from enteroaggregative Escherichia coli (EAEC).","Biochemical and biophysical research communications","2014","445","439-44","MPID","4om9"
"2616","24512202","function","Stark JL, Mehla K, Chaika N, Acton TB, Xiao R, Singh PK, Montelione GT, Powers R","Structure and Function of Human DnaJ Homologue Subfamily A Member 1 (DNAJA1) and Its Relationship to Pancreatic Cancer.","Biochemistry","2014","53","1360-72","NESG",""
"2767","24487958","structure","Li Q, Wanderling S, Paduch M, Medovoy D, Singharoy A, McGreevy R, Villalba-Galea CA, Hulse RE, Roux B, Schulten K, Kossiakoff A, Perozo E","Structural mechanism of voltage-dependent gating in an isolated voltage-sensing domain.","Nature Structural & Molecular Biology","2014","21","244-52","CEBS","4g7v 4g7y 4g80"
"2636","24462206","structure","Lavery LA, Partridge JR, Ramelot TA, Elnatan D, Kennedy MA, Agard DA","Structural asymmetry in the closed state of mitochondrial Hsp90 (TRAP1) supports a two-step ATP hydrolysis mechanism.","Molecular Cell","2014","53","330-43","NESG",""
"2596","24456211","structure","Srinivasan B, Forouhar F, Shukla A, Sampangi C, Kulkarni S, Abashidze M, Seetharaman J, Lew S, Mao L, Acton TB, Xiao R, Everett JK, Montelione GT, Tong L, Balaram H","Allosteric regulation and substrate activation in cytosolic nucleotidase II from Legionella pneumophila","FEBS Journal","2014","281","1613-28","NESG",""
"2612","24440517","structure","Vorobiev SM, Gensler Y, Vahedian-Movahed H, Seetharaman J, Su M, Huang JY, Xiao R, Kornhaber G, Montelione GT, Tong L, Ebright RH, Nickels BE","Structure of the DNA-Binding and RNA-Polymerase-Binding Region of Transcription Antitermination Factor λQ","Structure","2014","22","488-95","NESG",""
"2644","24438162","structure","Chaikuad A, Keates T, Vincke C, Kaufholz M, Zenn M, Zimmermann B, Gutiérrez C, Zhang RG, Hatzos-Skintges C, Joachimiak A, Muyldermans S, Herberg FW, Knapp S, Müller S","Structure of cyclin G-associated kinase (GAK) trapped in different conformations using nanobodies.","Biochemical Journal","2014","459","59-69","MCSG","4o38"
"2743","24436330","function","Li J, Zhuo M, Pei L, Rajagopal M, Yu AS","Comprehensive cysteine-scanning mutagenesis reveals Claudin-2 pore-lining residues with different intrapore locations.","Journal of Biological Chemistry","2014","289","6475-84","TJMP",""
"2742","24435797","structure","Desai KK, Cheng CL, Bingman CA, Phillips GN, Raines RT","A tRNA splicing operon: Archease endows RtcB with dual GTP/ATP cofactor specificity and accelerates RNA ligation.","Nucleic Acids Research","2014","42","3931-42","NatPro","4n2p"
"2687","24413399","structure","Fenalti G, Giguere PM, Katritch V, Huang XP, Thompson AA, Cherezov V, Roth BL, Stevens RC","Molecular control of δ-opioid receptor signalling.","Nature","2014","506","191-6","GPCR","4n6h"
"2614","24389466","structure","Boël G, Smith PC, Ning W, Englander MT, Chen B, Hashem Y, Testa AJ, Fischer JJ, Wieden HJ, Frank J, Gonzalez RL, Hunt JF","The ABC-F protein EttA gates ribosome entry into the translation elongation cycle.","Nature Structural & Molecular Biology","2014","21","143-51","NESG",""
"2613","24389465","structure","Chen B, Boël G, Hashem Y, Ning W, Fei J, Wang C, Gonzalez RL, Hunt JF, Frank J","EttA regulates translation by binding the ribosomal E site and restricting ribosome-tRNA dynamics.","Nature Structural & Molecular Biology","2014","21","152-9","NESG",""
"2572","24383880","structure","Trame CB, Chang Y, Axelrod HL, Eberhardt RY, Coggill P, Punta M, Rawlings ND","New mini- zincin structures provide a minimal scaffold for members of this metallopeptidase superfamily.","BMC Bioinformatics","2014","15","1","JCSG","3e11"
"2685","24359917","structure","Hollenstein K, de Graaf C, Bortolato A, Wang MW, Marshall FH, Stevens RC","Insights into the structure of class B GPCRs.","Trends in pharmacological sciences","2014","35","12-22","GPCR",""
"2713","24333483","structure","Koellhoffer JF, Dai Z, Malashkevich VN, Stenglein MD, Liu Y, Toro R, S Harrison J, Chandran K, DeRisi JL, Almo SC, Lai JR","Structural characterization of the glycoprotein GP2 core domain from the CAS virus, a novel arenavirus-like species.","Journal of Molecular Biology","2014","426","1452-68","NYSGRC","4n23 4n21"
"2683","24317697","structure","Zhou X, Levin EJ, Pan Y, McCoy JG, Sharma R, Kloss B, Bruni R, Quick M, Zhou M","Structural basis of the alternating-access mechanism in a bile acid transporter.","Nature","2014","505","569-73","NYCOMPS","4n7x 4n7w"
"2689","24217444","function","Kennedy DP, McRobb FM, Leonhardt SA, Purdy M, Figler H, Marshall MA, Chordia M, Figler R, Linden J, Abagyan R, Yeager M","The second extracellular loop of the adenosine A1 receptor mediates activity of allosteric enhancers.","Molecular pharmacology","2014","85","301-9","CHSAM+GPCR",""
"2542","24174223","note","Das D, Chiu HJ, Farr CL, Grant JC, Jaroszewski L, Knuth MW, Miller MD, Tien HJ, Elsliger MA, Deacon AM, Godzik A, Lesley SA, Wilson IA","Crystal structure of a putative quorum sensing-regulated protein (PA3611) from the Pseudomonas-specific DUF4146 family.","Proteins","2014","82","1086-92","JCSG","3npd"
"2708","24120938","structure","Shaya D, Findeisen F, Abderemane-Ali F, Arrigoni C, Wong S, Nurva SR, Loussouarn G, Minor DL","Structure of a prokaryotic sodium channel pore reveals essential gating elements and an outer ion binding site common to eukaryotic channels.","Journal of Molecular Biology","2014","426","467-83","CSMP","4ltr 4ltq 4ltp 4lto"
"2707","24075869","structure","Sun ZY, Cheng Y, Kim M, Song L, Choi J, Kudahl UJ, Brusic V, Chowdhury B, Yu L, Seaman MS, Bellot G, Shih WM, Wagner G, Reinherz EL","Disruption of helix-capping residues 671 and 674 reveals a role in HIV-1 entry for a specialized hinge segment of the membrane proximal external region of gp41.","Journal of Molecular Biology","2014","426","1095-108","MPSbyNMR","2me1 2me2 2me3 2me4"
"2710","24055819","structure","OuYang B, Chou JJ","The minimalist architectures of viroporins and their therapeutic implications.","Biochimica et biophysica acta","2014","1838","1058-67","MPSbyNMR","2kix 2rlf 3lbw"
"2533","24051416","structure","Xu Q, Chiu HJ, Farr CL, Jaroszewski L, Knuth MW, Miller MD, Lesley SA, Godzik A, Elsliger MA, Deacon AM, Wilson IA","Structures of a bifunctional cell wall hydrolase CwlT containing a novel bacterial lysozyme and an NlpC/P60 DL-endopeptidase.","Journal of Molecular Biology","2014","426","169-84","JCSG","4fdy 4hpe"
"2718","23957615","function","Loza-Correa M, Sahr T, Rolando M, Daniels C, Petit P, Skarina T, Gomez Valero L, Dervins-Ravault D, Honoré N, Savchenko A, Buchrieser C","The Legionella pneumophila kai operon is implicated in stress response and confers fitness in competitive environments.","Environmental microbiology","2014","16","359-81","MCSG",""
"2510","23852666","note","Xu Q, Grant J, Chiu HJ, Farr CL, Jaroszewski L, Knuth MW, Miller MD, Lesley SA, Godzik A, Elsliger MA, Deacon AM, Wilson IA","Crystal structure of a member of a novel family of dioxygenases (PF10014) reveals a conserved cupin fold and active site.","Proteins","2014","82","164-70","JCSG","3pl0"
"2508","23836456","structure","Bhowmik S, Jones DH, Chiu HP, Park IH, Chiu HJ, Axelrod HL, Farr CL, Tien HJ, Agarwalla S, Lesley SA","Structural and functional characterization of BaiA, an enzyme involved in secondary bile acid synthesis in human gut microbe.","Proteins","2014","82","216-29","JCSG","4is2 4is3"
"2804","24634806","function","Alderson TR, Markley JL","Biophysical characterization of α-synuclein and its controversial structure.","Intrinsically disordered proteins","2013","1","18-39","MPP",""
"2618","24555072","structure","Rigden DJ, Xu Q, Chang Y, Eberhardt RY, Finn RD, Rawlings ND","The first structure in a family of peptidase inhibitors reveals an unusual Ig-like fold.","F1000Research","2013","2","154","JCSG","3isy"
"2564","24357322","structure","Liu W, Wacker D, Gati C, Han GW, James D, Wang D, Nelson G, Weierstall U, Katritch V, Barty A, Zatsepin NA, Li D, Messerschmidt M, Boutet S, Williams GJ, Koglin JE, Seibert MM, Wang C, Shah ST, Basu S, Fromme R, Kupitz C, Rendek KN, Grotjohann I, Fromme P, Kirian RA, Beyerlein KR, White TA, Chapman HN, Caffrey M, Spence JC, Stevens RC, Cherezov V","Serial femtosecond crystallography of G protein-coupled receptors.","Science","2013","342","1521-4","GPCR+MPID","4nc3"
"2745","24352554","structure","Johansson LC, Arnlund D, Katona G, White TA, Barty A, DePonte DP, Shoeman RL, Wickstrand C, Sharma A, Williams GJ, Aquila A, Bogan MJ, Caleman C, Davidsson J, Doak RB, Frank M, Fromme R, Galli L, Grotjohann I, Hunter MS, Kassemeyer S, Kirian RA, Kupitz C, Liang M, Lomb L, Malmerberg E, Martin AV, Messerschmidt M, Nass K, Redecke L, Seibert MM, Sjöhamn J, Steinbrener J, Stellato F, Wang D, Wahlgren WY, Weierstall U, Westenhoff S, Zatsepin NA, Boutet S, Spence JC, Schlichting I, Chapman HN, Fromme P, Neutze R","Structure of a photosynthetic reaction centre determined by serial femtosecond crystallography.","Nature communications","2013","4","2911","MPID","4cas"
"2670","24352419","function","Pagliarini DJ, Rutter J","Hallmarks of a new era in mitochondrial biochemistry.","Genes & development","2013","27","2615-27","MPP",""
"2544","24288331","structure","Kong L, Giang E, Nieusma T, Kadam RU, Cogburn KE, Hua Y, Dai X, Stanfield RL, Burton DR, Ward AB, Wilson IA, Law M","Hepatitis C virus E2 envelope glycoprotein core structure.","Science","2013","342","1090-4","JCSG","4mwf"
"2555","24274019","structure","Hwang WC, Bakolitsa C, Punta M, Coggill PC, Bateman A, Axelrod HL, Rawlings ND, Sedova M, Peterson SN, Eberhardt RY, Aravind L, Pascual J, Godzik A","LUD, a new protein domain associated with lactate utilization.","BMC Bioinformatics","2013","14","341","JCSG","2g40"
"2749","24252706","structure","Ramagopal UA, Dulyaninova NG, Varney KM, Wilder PT, Nallamsetty S, Brenowitz M, Weber DJ, Almo SC, Bresnick AR","Structure of the S100A4/myosin-IIA complex.","BMC Structural Biology","2013","13","31","NYSGRC","4eto 4hsz"
"2556","24246060","structure","Eberhardt RY, Chang Y, Bateman A, Murzin AG, Axelrod HL, Hwang WC, Aravind L","Filling out the structural map of the NTF2-like superfamily.","BMC Bioinformatics","2013","14","327","JCSG","3kzt 3k7c 4hyz"
"2587","24215428","structure","Kronfel CM, Kuzin AP, Forouhar F, Biswas A, Su M, Lew S, Seetharaman J, Xiao R, Everett JK, Ma LC, Acton TB, Montelione GT, Hunt JF, Paul CE, Dragomani TM, Boutaghou MN, Cole RB, Riml C, Alvey RM, Bryant DA, Schluchter WM","Structural and Biochemical Characterization of the Bilin Lyase CpcS from Thermosynechococcus elongatus.","Biochemistry","2013","52","8663-76","NESG",""
"2734","24210433","function","Miller PW, Clarke DN, Weis WI, Lowe CJ, Nelson WJ","The evolutionary origin of epithelial cell-cell adhesion mechanisms.","Current topics in membranes","2013","72","267-311","CELLMAT",""
"2546","24179159","structure","Julien JP, Cupo A, Sok D, Stanfield RL, Lyumkis D, Deller MC, Klasse PJ, Burton DR, Sanders RW, Moore JP, Ward AB, Wilson IA","Crystal structure of a soluble cleaved HIV-1 envelope trimer.","Science","2013","342","1477-83","JCSG","4nco"
"2675","24173033","structure","Pak JE, Ekendé EN, Kifle EG, O'Connell JD, De Angelis F, Tessema MB, Derfoufi KM, Robles-Colmenares Y, Robbins RA, Goormaghtigh E, Vandenbussche G, Stroud RM","Structures of intermediate transport states of ZneA, a Zn(II)/proton antiporter.","Proceedings of the National Academy of Sciences of the United States of America","2013","110","18484-9","CSMP","4k0e 4k0j"
"2645","24171432","structure","Lemak S, Beloglazova N, Nocek B, Skarina T, Flick R, Brown G, Popovic A, Joachimiak A, Savchenko A, Yakunin AF","Toroidal structure and DNA cleavage by the CRISPR-associated [4Fe-4S] cluster containing Cas4 nuclease SSO0001 from Sulfolobus solfataricus.","Journal of the American Chemical Society","2013","135","17476-87","MCSG","4ic1"
"2584","24155237","structure","Meng L, Forouhar F, Thieker D, Gao Z, Ramiah A, Moniz H, Xiang Y, Seetharaman J, Milaninia S, Su M, Bridger R, Veillon L, Azadi P, Kornhaber G, Wells L, Montelione GT, Woods RJ, Tong L, Moremen KW","Enzymatic Basis for N-Glycan Sialylation: STRUCTURE OF RAT α2,6-SIALYLTRANSFERASE (ST6GAL1) REVEALS CONSERVED AND UNIQUE FEATURES FOR GLYCAN SIALYLATION.","Journal of Biological Chemistry","2013","288","34680-98","NESG",""
"2680","24138653","structure","Malashkevich VN, Almo SC, Dowd TL","X-ray crystal structure of bovine 3 Glu-osteocalcin.","Biochemistry","2013","52","8387-92","NYSGRC","4mzz 1q8h"
"2622","24130829","structure","Lemak A, Yee A, Wu H, Yap D, Zeng H, Dombrovski L, Houliston S, Aparicio S, Arrowsmith CH","Solution NMR structure and histone binding of the PHD domain of human MLL5.","PLoS ONE","2013","8","e77020","NESG",""
"2538","24123814","structure","Das D, Hervé M, Elsliger MA, Kadam RU, Grant J, Chiu HJ, Knuth MW, Klock HE, Miller MD, Godzik A, Lesley SA, Deacon AM, Mengin-Lecreulx D, Wilson IA","Structure and function of a novel LD-carboxypeptidase A involved in peptidoglycan recycling.","Journal of Bacteriology","2013","195","5555-66","JCSG","3g23"
"2690","24121503","structure","Vardy E, Mosier PD, Frankowski KJ, Wu H, Katritch V, Westkaemper RB, Aubé J, Stevens RC, Roth BL","Chemotype-selective modes of action of κ-opioid receptor agonists.","Journal of Biological Chemistry","2013","288","34470-83","GPCR",""
"2681","24099302","function","Podshivalova K, Salomon DR","MicroRNA regulation of T-lymphocyte immunity: modulation of molecular networks responsible for T-cell activation, differentiation, and development.","Critical reviews in immunology","2013","33","435-76","TCELL",""
"2619","24077226","structure","Bhabha G, Ekiert DC, Jennewein M, Zmasek CM, Tuttle LM, Kroon G, Dyson HJ, Godzik A, Wilson IA, Wright PE","Divergent evolution of protein conformational dynamics in dihydrofolate reductase.","Nature Structural & Molecular Biology","2013","20","1243-9","JCSG","4m6j 4m6k 4m6l"
"2740","24068324","function","Hansen SD, Kwiatkowski AV, Ouyang CY, Liu H, Pokutta S, Watkins SC, Volkmann N, Hanein D, Weis WI, Mullins RD, Nelson WJ","αE-catenin actin-binding domain alters actin filament conformation and regulates binding of nucleation and disassembly factors.","Molecular biology of the cell","2013","24","3710-20","CELLMAT",""
"2554","24060347","function","Odokonyero D, Ragumani S, Lopez MS, Bonanno JB, Ozerova ND, Woodard DR, Machala BW, Swaminathan S, Burley SK, Almo SC, Glasner ME","Divergent evolution of ligand binding in the o-succinylbenzoate synthase family.","Biochemistry","2013","52","7512-21","NYSGRC+NYSGXRC","2opj 2qvh"
"2578","24060334","structure","Rosato A, Tejero R, Montelione GT","Quality assessment of protein NMR structures.","Current Opinion in Structural Biology","2013","23","715-24","NESG",""
"2557","24056934","structure","Zhao S, Kumar R, Sakai A, Vetting MW, Wood BM, Brown S, Bonanno JB, Hillerich BS, Seidel RD, Babbitt PC, Almo SC, Sweedler JV, Gerlt JA, Cronan JE, Jacobson MP","Discovery of new enzymes and metabolic pathways by using structure and genome context.","Nature","2013","502","698-702","EFI+NYSGRC","4h2h 2pmq"
"2679","24056371","function","Gilliland CT, Salanga CL, Kawamura T, Trejo J, Handel TM","The chemokine receptor CCR1 is constitutively active, which leads to G protein-independent, β-arrestin-mediated internalization.","Journal of Biological Chemistry","2013","288","32194-210","CHSAM",""
"2577","24055473","structure","Ramelot TA, Yang Y, Sahu ID, Lee HW, Xiao R, Lorigan GA, Montelione GT, Kennedy MA","NMR structure and MD simulations of the AAA protease intermembrane space domain indicates peripheral membrane localization within the hexaoligomer.","FEBS Letters","2013","587","3522-8","MPP+NESG","2lna"
"2581","24048810","structure","Pulavarti SV, Eletsky A, Lee HW, Acton TB, Xiao R, Everett JK, Prestegard JH, Montelione GT, Szyperski T","Solution NMR structure of CD1104B from pathogenic Clostridium difficile reveals a distinct α-helical architecture and provides first structural representative of protein domain family PF14203.","Journal of Structural and Functional Genomics","2013","14","155-60","NESG",""
"2583","24039739","structure","Xu SY, Kuzin AP, Seetharaman J, Gutjahr A, Chan SH, Chen Y, Xiao R, Acton TB, Montelione GT, Tong L","Structure determination and biochemical characterization of a putative HNH endonuclease from Geobacter metallireducens GS-15.","PLoS ONE","2013","8","e72114","NESG",""
"2536","24030490","structure","Tan Q, Zhu Y, Li J, Chen Z, Han GW, Kufareva I, Li T, Ma L, Fenalti G, Li J, Zhang W, Xie X, Yang H, Jiang H, Cherezov V, Liu H, Stevens RC, Zhao Q, Wu B","Structure of the CCR5 chemokine receptor-HIV entry inhibitor maraviroc complex.","Science","2013","341","1387-90","GPCR","4mbs"
"2532","24004689","structure","Coggill P, Eberhardt RY, Finn RD, Chang Y, Jaroszewski L, Godzik A, Das D, Xu Q, Axelrod HL, Aravind L, Murzin AG, Bateman A","Two Pfam protein families characterized by a crystal structure of protein lpg2210 from Legionella pneumophila.","BMC Bioinformatics","2013","14","265","JCSG","4g2a"
"2524","24003232","structure","Majorek KA, Kuhn ML, Chruszcz M, Anderson WF, Minor W","Structural, functional and inhibition studies of a GNAT superfamily protein PA4794: a new C-terminal lysine protein acetyltransferase from Pseudomonas aeruginosa.","Journal of Biological Chemistry","2013","288","30223-35","CSGID+MCSG","4kua 3pgp 4kub 4l89 4l8a 4klv 4kot 4kow 4kox 4kov 4kou 4koy 4kor 4kos 4klw"
"2649","23973992","structure","Fahim A, Mukhopadhyay R, Yandle R, Prestegard JH, Valafar H","Protein structure validation and identification from unassigned residual dipolar coupling data using 2D-PDPA.","Molecules (Basel, Switzerland)","2013","18","10162-88","NESG",""
"2731","23970565","function","Nakayasu ES, Tempel R, Cambronne XA, Petyuk VA, Jones MB, Gritsenko MA, Monroe ME, Yang F, Smith RD, Adkins JN, Heffron F","Comparative phosphoproteomics reveals components of host cell invasion and post-transcriptional regulation during Francisella infection.","Molecular & Cellular Proteomics","2013","12","3297-309","PCSEP",""
"2711","23968233","structure","Hitchcock DS, Fan H, Kim J, Vetting M, Hillerich B, Seidel RD, Almo SC, Shoichet BK, Sali A, Raushel FM","Structure-guided discovery of new deaminase enzymes.","Journal of the American Chemical Society","2013","135","13927-33","NYSGRC","2plm 1p1m 2uz9 4f0s 4f0r 4dzh 4dyk"
"2582","23963952","structure","Pulavarti SV, He Y, Feldmann EA, Eletsky A, Acton TB, Xiao R, Everett JK, Montelione GT, Kennedy MA, Szyperski T","Solution NMR structures provide first structural coverage of the large protein domain family PF08369 and complementary structural coverage of dark operative protochlorophyllide oxidoreductase complexes.","Journal of Structural and Functional Genomics","2013","14","119-26","NESG",""
"2695","23950998","function","Kidwai AS, Mushamiri I, Niemann GS, Brown RN, Adkins JN, Heffron F","Diverse secreted effectors are required for Salmonella persistence in a mouse infection model.","PLoS ONE","2013","8","e70753","PCSEP",""
"2522","23940031","function","Cai K, Frederick RO, Kim JH, Reinen NM, Tonelli M, Markley JL","Human Mitochondrial Chaperone (mtHSP70) and Cysteine Desulfurase (NFS1) Bind Preferentially to the Disordered Conformation whereas Co-chaperone (HSC20) Binds to the Structured Conformation of the Iron-Sulfur Cluster Scaffold Protein (ISCU).","Journal of Biological Chemistry","2013","288","28755-70","MPP",""
"2518","23932593","structure","Blair JA, Xu Q, Childers WS, Mathews II, Kern JW, Eckart M, Deacon AM, Shapiro L","Branched signal wiring of an essential bacterial cell-cycle phosphotransfer protein.","Structure","2013","21","1590-601","JCSG","4fmt"
"2692","23920489","function","Saier MH","Microcompartments and protein machines in prokaryotes.","Journal of Molecular Microbiology and Biotechnology","2013","23","243-69","TransportPDB",""
"2512","23897711","structure","Pokkuluri PR, Dwulit-Smith J, Duke NE, Wilton R, Mack JC, Bearden J, Rakowski E, Babnigg G, Szurmant H, Joachimiak A, Schiffer M","Analysis of periplasmic sensor domains from Anaeromyxobacter dehalogenans 2CP-C: Structure of one sensor domain from a histidine kinase and another from a chemotaxis protein.","MicrobiologyOpen","2013","2","766-77","MCSG","4k08 4k0d"
"2513","23877221","structure","Kube M, Chernikova TN, Al-Ramahi Y, Beloqui A, Lopez-Cortez N, Guazzaroni ME, Heipieper HJ, Klages S, Kotsyurbenko OR, Langer I, Nechitaylo TY, Lünsdorf H, Fernández M, Juárez S, Ciordia S, Singer A, Kagan O, Egorova O, Alain Petit P, Stogios P, Kim Y, Tchigvintsev A, Flick R, Denaro R, Genovese M, Albar JP, Reva ON, Martínez-Gomariz M, Tran H, Ferrer M, Savchenko A, Yakunin AF, Yakimov MM, Golyshina OV, Reinhardt R, Golyshin PN","Genome sequence and functional genomic analysis of the oil-degrading bacterium Oleispira antarctica.","Nature communications","2013","4","2156","MCSG","3qvm 3qvq 3m16 3lqy 3lnp 3v77 3vcr 3iru 3lmb"
"2523","23864654","function","Still AJ, Floyd BJ, Hebert AS, Bingman CA, Carson JJ, Gunderson DR, Dolan BK, Grimsrud PA, Dittenhafer-Reed KE, Stapleton DS, Keller MP, Westphall MS, Denu JM, Attie AD, Coon JJ, Pagliarini DJ","Quantification of mitochondrial acetylation dynamics highlights prominent sites of metabolic regulation.","Journal of Biological Chemistry","2013","288","26209-19","MPP",""
"2526","23863937","structure","Siu FY, He M, de Graaf C, Han GW, Yang D, Zhang Z, Zhou C, Xu Q, Wacker D, Joseph JS, Liu W, Lau J, Cherezov V, Katritch V, Wang MW, Stevens RC","Structure of the human glucagon class B G-protein-coupled receptor.","Nature","2013","499","444-9","GPCR+JCSG","4l6r"
"2563","23851574","structure","Jürgens MC, Vörös J, Rautureau GJ, Shepherd DA, Pye VE, Muldoon J, Johnson CM, Ashcroft AE, Freund SM, Ferguson N","The hepatitis B virus preS1 domain hijacks host trafficking proteins by motif mimicry.","Nature Chemical Biology","2013","9","540-7","MPID","4bcx 3zhf 2ymt"
"2585","23851074","structure","Uemura Y, Nakagawa N, Wakamatsu T, Kim K, Montelione GT, Hunt JF, Kuramitsu S, Masui R","Crystal structure of the ligand-binding form of nanoRNase from Bacteroides fragilis, a member of the DHH/DHHA1 phosphoesterase family of proteins.","FEBS Letters","2013","587","2669-74","NESG",""
"2506","23840608","function","Deatherage Kaiser BL, Li J, Sanford JA, Kim YM, Kronewitter SR, Jones MB, Peterson CT, Peterson SN, Frank BC, Purvine SO, Brown JN, Metz TO, Smith RD, Heffron F, Adkins JN","A Multi-Omic View of Host-Pathogen-Commensal Interplay in Salmonella-Mediated Intestinal Infection.","PLoS ONE","2013","8","e67155","PCSEP",""
"2691","23817618","function","Murphy TF, Brauer AL, Kirkham C, Johnson A, Koszelak-Rosenblum M, Malkowski MG","Role of the zinc uptake ABC transporter of Moraxella catarrhalis in persistence in the respiratory tract.","Infection and immunity","2013","81","3406-13","MPSBC",""
"2559","23814056","structure","Gingras AR, Puzon-McLaughlin W, Ginsberg MH","The structure of the ternary complex of Krev interaction trapped 1 (KRIT1) bound to both the Rap1 GTPase and the heart of glass (HEG1) cytoplasmic tail.","Journal of Biological Chemistry","2013","288","23639-49","CELLMAT","4hdq 4hdo"
"2507","23811341","structure","Chruszcz M, Mikolajczak K, Mank N, Majorek KA, Porebski PJ, Minor W","Serum albumins-Unusual allergens.","Biochimica et biophysica acta","2013","1830","5375-81","NYSGRC",""
"2704","23802178","structure","Ziarek JJ, Getschman AE, Butler SJ, Taleski D, Stephens B, Kufareva I, Handel TM, Payne RJ, Volkman BF","Sulfopeptide probes of the CXCR4/CXCL12 interface reveal oligomer-specific contacts and chemokine allostery.","ACS Chemical Biology","2013","8","1955-63","CHSAM+GPCR","1sdf 2k01 2k05"
"2487","23791943","structure","Froese DS, Forouhar F, Tran TH, Vollmar M, Kim YS, Lew S, Neely H, Seetharaman J, Shen Y, Xiao R, Acton TB, Everett JK, Cannone G, Puranik S, Savitsky P, Krojer T, Pilka ES, Kiyani W, Lee WH, Marsden BD, von Delft F, Allerston CK, Spagnolo L, Gileadi O, Montelione GT, Oppermann U, Yue WW, Tong L","Crystal Structures of Malonyl-Coenzyme A Decarboxylase Provide Insights into Its Catalytic Mechanism and Disease-Causing Mutations.","Structure","2013","21","1182-92","NESG",""
"2558","23788645","function","Miller PW, Pokutta S, Ghosh A, Almo SC, Weis WI, Nelson WJ, Kwiatkowski AV","Danio rerio αE-catenin is a monomeric F-actin binding protein with distinct properties from Mus musculus αE-catenin.","Journal of Biological Chemistry","2013","288","22324-32","CELLMAT+NYSGRC",""
"2672","23770887","structure","Riley BE, Lougheed JC, Callaway K, Velasquez M, Brecht E, Nguyen L, Shaler T, Walker D, Yang Y, Regnstrom K, Diep L, Zhang Z, Chiou S, Bova M, Artis DR, Yao N, Baker J, Yednock T, Johnston JA","Structure and function of Parkin E3 ubiquitin ligase reveals aspects of RING and HECT ligases.","Nature communications","2013","4","1982","CSMP","4i1f 4i1h"
"2550","23760508","function","Li J, Zhuo M, Pei L, Yu AS","Conserved aromatic residue confers cation selectivity in claudin-2 and claudin-10b.","Journal of Biological Chemistry","2013","288","22790-7","TJMP",""
"2568","23754289","function","Harikumar KG, Cawston EE, Lam PC, Patil A, Orry A, Henke BR, Abagyan R, Christopoulos A, Sexton PM, Miller LJ","Molecular basis for benzodiazepine agonist action at the type 1 cholecystokinin receptor.","Journal of Biological Chemistry","2013","288","21082-95","CHSAM+GPCR",""
"2368","23745136","structure","Tkaczuk KL, Shumilin IA, Chruszcz M, Evdokimova E, Savchenko A, Minor W","Structural and functional insight into the universal stress protein family","Evolutionary Applications","2013","6","434-449","MCSG","3dlo 3qtb 2pfs 3tnj"
"2496","23739335","structure","OuYang B, Xie S, Berardi MJ, Zhao X, Dev J, Yu W, Sun B, Chou JJ","Unusual architecture of the p7 channel from hepatitis C virus.","Nature","2013","498","521-5","MPSbyNMR","2m6x"
"2723","23726984","structure","Goult BT, Xu XP, Gingras AR, Swift M, Patel B, Bate N, Kopp PM, Barsukov IL, Critchley DR, Volkmann N, Hanein D","Structural studies on full-length talin1 reveal a compact auto-inhibited dimer: implications for talin activation.","Journal of Structural Biology","2013","184","21-32","CELLMAT","3dyj"
"2547","23720318","structure","Ansong C, Wu S, Meng D, Liu X, Brewer HM, Deatherage Kaiser BL, Nakayasu ES, Cort JR, Pevzner P, Smith RD, Heffron F, Adkins JN, Pasa-Tolic L","Top-down proteomics reveals a unique protein S-thiolation switch in Salmonella Typhimurium in response to infection-like conditions.","Proceedings of the National Academy of Sciences of the United States of America","2013","110","10153-8","PCSEP",""
"2471","23708608","function","Qi R, Sarbeng EB, Liu Q, Le KQ, Xu X, Xu H, Yang J, Wong JL, Vorvis C, Hendrickson WA, Zhou L, Liu Q","Allosteric opening of the polypeptide-binding site when an Hsp70 binds ATP.","Nature Structural & Molecular Biology","2013","20","900-7","NYCOMPS",""
"2468","23708606","structure","Kong L, Lee JH, Doores KJ, Murin CD, Julien JP, McBride R, Liu Y, Marozsan A, Cupo A, Klasse PJ, Hoffenberg S, Caulfield M, King CR, Hua Y, Le KM, Khayat R, Deller MC, Clayton T, Tien H, Feizi T, Sanders RW, Paulson JC, Moore JP, Stanfield RL, Burton DR, Ward AB, Wilson IA","Supersite of immune vulnerability on the glycosylated face of HIV-1 envelope glycoprotein gp120.","Nature Structural & Molecular Biology","2013","20","796-803","JCSG","4jm4 4jm2"
"2516","23685453","structure","Waight AB, Pedersen BP, Schlessinger A, Bonomi M, Chau BH, Roe-Zurz Z, Risenmay AJ, Sali A, Stroud RM","Structural basis for alternating access of a eukaryotic calcium/proton exchanger.","Nature","2013","499","107-10","CSMP","4k1c"
"2673","23685211","structure","Haapalainen AM, Thomas K, Tyler PC, Evans GB, Almo SC, Schramm VL","Salmonella enterica MTAN at 1.36 Å resolution: a structure-based design of tailored transition state analogs.","Structure","2013","21","963-74","NYSGRC","4f1w 4f2w 4f3k 4f3c"
"2668","23682711","function","Kim JH, Frederick RO, Reinen NM, Troupis AT, Markley JL","[2Fe-2S]-ferredoxin binds directly to cysteine desulfurase and supplies an electron for iron-sulfur cluster assembly but is displaced by the scaffold protein or bacterial frataxin.","Journal of the American Chemical Society","2013","135","8117-20","MPP",""
"2503","23681886","structure","Serrano P, Geralt M, Mohanty B, Wüthrich K","Structural representative of the protein family PF14466 has a new fold and establishes links with the C2 and PLAT domains from the widely distant Pfams PF00168 and PF01477.","Protein Science","2013","22","1000-7","JCSG","2lg7 2lge"
"2549","23677799","function","Li J, Angelow S, Linge A, Zhuo M, Yu AS","Claudin-2 pore function requires an intramolecular disulfide bond between two conserved extracellular cysteines.","American journal of physiology. Cell physiology","2013","305","C190-6","TJMP",""
"2527","23676677","structure","Li D, Lyons JA, Pye VE, Vogeley L, Aragão D, Kenyon CP, Shah ST, Doherty C, Aherne M, Caffrey M","Crystal structure of the integral membrane diacylglycerol kinase.","Nature","2013","497","521-4","MPID","3ze3 3ze4 3ze5"
"2497","23676670","structure","Kim J, Xiao H, Bonanno JB, Kalyanaraman C, Brown S, Tang X, Al-Obaidi NF, Patskovsky Y, Babbitt PC, Jacobson MP, Lee YS, Almo SC","Structure-guided discovery of the metabolite carboxy-SAM that modulates tRNA function.","Nature","2013","498","123-6","NYSGRC+EFI+NYSGXRC","4gek"
"2517","23664863","structure","Bissig C, Lenoir M, Velluz MC, Kufareva I, Abagyan R, Overduin M, Gruenberg J","Viral infection controlled by a calcium-dependent lipid-binding module in ALIX.","Developmental cell","2013","25","364-73","CHSAM+GPCR",""
"2569","23663982","function","Wang X, Sharp JS, Handel TM, Prestegard JH","Chemokine oligomerization in cell signaling and migration.","Progress in molecular biology and translational science","2013","117","531-78","CHSAM",""
"2502","23662776","structure","Singh S, Chang A, Helmich KE, Bingman CA, Wrobel RL, Beebe ET, Makino SI, Aceti DJ, Dyer K, Hura GL, Sunkara M, Morris AJ, Phillips GN, Thorson JS","Structural and Functional Characterization of CalS11, a TDP-Rhamnose 3'-O-Methyltransferase Involved in Calicheamicin Biosynthesis.","ACS Chemical Biology","2013","8","1632-1639","NATPRO+","3tos 4gf5"
"2548","23649778","function","Nakayasu ES, Ansong C, Brown JN, Yang F, Lopez-Ferrer D, Qian WJ, Smith RD, Adkins JN","Evaluation of selected binding domains for the analysis of ubiquitinated proteomes.","Journal of the American Society for Mass Spectrometry","2013","24","1214-23","PCSEP",""
"2560","23647830","function","Zheng WH, Västermark Å, Shlykov MA, Reddy V, Sun EI, Saier MH","Evolutionary relationships of ATP-Binding Cassette (ABC) uptake porters.","BMC microbiology","2013","13","98","TransportPDB",""
"2515","23640210","structure","O'Hayre M, Vázquez-Prado J, Kufareva I, Stawiski EW, Handel TM, Seshagiri S, Gutkind JS","The emerging mutational landscape of G proteins and G-protein-coupled receptors in cancer.","Nature reviews. Cancer","2013","13","412-24","CHSAM+GPCR",""
"2701","23639857","function","Nakayasu ES, Brown RN, Ansong C, Sydor MA, Imtiaz S, Mihai C, Sontag R, Hixson KK, Monroe ME, Sobreira TJ, Orr G, Petyuk VA, Yang F, Smith RD, Adkins JN","Multi-omic data integration links deleted in breast cancer 1 (DBC1) degradation to chromatin remodeling in inflammatory response.","Molecular & Cellular Proteomics","2013","12","2136-47","PCSEP",""
"2501","23637603","function","Cao Y, Aceti DJ, Sabat G, Song J, Makino S, Fox BG, Bent AF","Mutations in FLS2 Ser-938 dissect signaling activation in FLS2-mediated Arabidopsis immunity.","PLos Pathogens","2013","9","e1003313","TMPC",""
"2407","23636324","structure","Wang C, Wu H, Katritch V, Han GW, Huang XP, Liu W, Siu FY, Roth BL, Cherezov V, Stevens RC","Structure of the human smoothened receptor bound to an antitumour agent.","Nature","2013","497","338-43","GPCR","4jkv"
"2529","23617613","structure","Kim J, Almo SC","Structural basis for hypermodification of the wobble uridine in tRNA by bifunctional enzyme MnmC.","BMC Structural Biology","2013","13","5","NYSGRC","3ps9"
"2763","23616405","note","Smith DW, Han MR, Park JS, Kim KR, Yeom T, Lee JY, Kim do J, Bingman CA, Kim HJ, Jo K, Han BW, Phillips GN","Crystal structure of the protein from Arabidopsis thaliana gene At5g06450, a putative DnaQ-like exonuclease domain-containing protein with homohexameric assembly.","Proteins","2013","81","1669-75","NATPRO+NatPro","1vk0"
"2373","23610410","structure","Kim Y, Ye Z, Joachimiak G, Videau P, Young J, Hurd K, Callahan SM, Gornicki P, Zhao J, Haselkorn R, Joachimiak A","Structures of complexes comprised of Fischerella transcription factor HetR with Anabaena DNA targets.","Proceedings of the National Academy of Sciences of the United States of America","2013","110","E1716-23","MCSG","4izz 4j00 4j01"
"2372","23606130","structure","Tan K, Chang C, Cuff M, Osipiuk J, Landorf E, Mack JC, Zerbs S, Joachimiak A, Collart FR","Structural and functional characterization of solute binding proteins for aromatic compounds derived from lignin: p-coumaric acid and related aromatic acids.","Proteins","2013","81","1709-26","MCSG+PCSEP","3sg0 4dqd 3ukj 4eyo 4eyq 3tx6 4f8j 4fb4 3uk0"
"2768","23604254","structure","Shukla AK, Manglik A, Kruse AC, Xiao K, Reis RI, Tseng WC, Staus DP, Hilger D, Uysal S, Huang LY, Paduch M, Tripathi-Shukla P, Koide A, Koide S, Weis WI, Kossiakoff AA, Kobilka BK, Lefkowitz RJ","Structure of active β-arrestin-1 bound to a G-protein-coupled receptor phosphopeptide.","Nature","2013","497","137-41","CEBS","4jqi"
"2447","23598339","structure","Cao Y, Pan Y, Huang H, Jin X, Levin EJ, Kloss B, Zhou M","Gating of the TrkH ion channel by its associated RCK protein TrkA.","Nature","2013","496","317-22","NYCOMPS","4j9v 4j9u"
"2682","23583036","structure","Vigdorovich V, Ramagopal UA, Lázár-Molnár E, Sylvestre E, Lee JS, Hofmeyer KA, Zang X, Nathenson SG, Almo SC","Structure and T cell inhibition properties of B7 family member, B7-H3.","Structure","2013","21","707-17","IFN+NYSGRC","4i0k"
"2409","23583034","function","Rubinstein R, Ramagopal UA, Nathenson SG, Almo SC, Fiser A","Functional classification of immune regulatory proteins.","Structure","2013","21","766-76","IFN+NYSGRC",""
"2390","23574807","function","Gabrielsen M, Wołosewicz K, Zawadzka A, Kossakowski J, Nowak G, Wolak M, Stachowicz K, Siwek A, Ravna AW, Kufareva I, Kozerski L, Bednarek E, Sitkowski J, Bocian W, Abagyan R, Bojarski AJ, Sylte I, Chilmonczyk Z","Synthesis, antidepressant evaluation and docking studies of long-chain alkylnitroquipazines as serotonin transporter inhibitors.","Chemical biology & drug design","2013","81","695-706","ATCG3D+CHSAM+GPCR",""
"2504","23572527","structure","Das D, Lee WS, Grant JC, Chiu HJ, Farr CL, Vance J, Klock HE, Knuth MW, Miller MD, Elsliger MA, Deacon AM, Godzik A, Lesley SA, Kornfeld S, Wilson IA","Structure and Function of the DUF2233 Domain in Bacteria and in the Human Mannose 6-Phosphate Uncovering Enzyme.","Journal of Biological Chemistry","2013","288","16789-99","JCSG","3ohg"
"2377","23572252","structure","Michalska K, Brown RN, Li H, Jedrzejczak R, Niemann GS, Heffron F, Cort JR, Adkins JN, Babnigg G, Joachimiak A,","New sub-family of lysozyme-like proteins shows no catalytic activity  crystallographic and biochemical study of STM3605 protein from Salmonella Typhimurium","Journal of Structural and Functional Genomics","2013","14","1-10","MCSG+PCSEP","4evx"
"2498","23569285","function","Dagliyan O, Shirvanyants D, Karginov AV, Ding F, Fee L, Chandrasekaran SN, Freisinger CM, Smolen GA, Huttenlocher A, Hahn KM, Dokholyan NV","Rational design of a ligand-controlled protein conformational switch.","Proceedings of the National Academy of Sciences of the United States of America","2013","110","6800-4","CELLMAT",""
"2402","23561519","function","Petrov E, Palanivelu D, Constantine M, Rohde PR, Cox CD, Nomura T, Minor DL, Martinac B","Patch-clamp characterization of the MscS-like mechanosensitive channel from Silicibacter pomeroyi.","Biophysical Journal","2013","104","1426-34","CSMP",""
"2514","23560983","structure","Desai KK, Bingman CA, Phillips GN, Raines RT","Structures of the noncanonical RNA ligase RtcB reveal the mechanism of histidine guanylylation.","Biochemistry","2013","52","2518-25","NATPRO+NatPro","4isz 4it0 4isj"
"2401","23542591","structure","Pedersen BP, Kumar H, Waight AB, Risenmay AJ, Roe-Zurz Z, Chau BH, Schlessinger A, Bonomi M, Harries W, Sali A, Johri AK, Stroud RM","Crystal structure of a eukaryotic phosphate transporter.","Nature","2013","496","533-6","CSMP","4j05"
"2425","23539602","structure","Pryor EE, Horanyi PS, Clark KM, Fedoriw N, Connelly SM, Koszelak-Rosenblum M, Zhu G, Malkowski MG, Wiener MC, Dumont ME","Structure of the integral membrane protein CAAX protease Ste24p.","Science","2013","339","1600-4","MPSBC","4il3"
"2567","23535894","structure","Soniat M, Sampathkumar P, Collett G, Gizzi AS, Banu RN, Bhosle RC, Chamala S, Chowdhury S, Fiser A, Glenn AS, Hammonds J, Hillerich B, Khafizov K, Love JD, Matikainen B, Seidel RD, Toro R, Rajesh Kumar P, Bonanno JB, Chook YM, Almo SC","Crystal structure of human Karyopherin β2 bound to the PY-NLS of Saccharomyces cerevisiae Nab2.","Journal of Structural and Functional Genomics","2013","14","31-5","NPCXstals+NYSGRC","4jlq"
"2566","23527695","structure","Rosen H, Stevens RC, Hanson M, Roberts E, Oldstone MB","Sphingosine-1-phosphate and its receptors: structure, signaling, and influence.","Annual Review of Biochemistry","2013","82","637-62","GPCR",""
"2376","23526584","structure","Wang F, Zhou M, Singh S, Yennamalli RM, Bingman CA, Thorson JS, Phillips GN","Crystal structure of SsfS6, the putative C-glycosyltransferase involved in SF2575 biosynthesis.","Proteins","2013","81","1277-1282","NATPRO+NatPro","4fzr 4g2t"
"2367","23519420","structure","Michalska K, Tan K, Li H, Hatzos-Skintges C, Bearden J, Babnigg G, Joachimiak A","GH1-family 6-P-β-glucosidases from human microbiome lactic acid bacteria.","Acta Crystallographica Section D: Biological Crystallography","2013","69","451-63","MCSG","3qom 4gze 3pn8 4f66 4f79"
"2406","23519215","structure","Wacker D, Wang C, Katritch V, Han GW, Huang XP, Vardy E, McCorvy JD, Jiang Y, Chu M, Siu FY, Liu W, Xu HE, Cherezov V, Roth BL, Stevens RC","Structural features for functional selectivity at serotonin receptors.","Science","2013","340","615-9","GPCR","4ib4"
"2405","23519210","structure","Wang C, Jiang Y, Ma J, Wu H, Wacker D, Katritch V, Han GW, Liu W, Huang XP, Vardy E, McCorvy JD, Gao X, Zhou XE, Melcher K, Zhang C, Bai F, Yang H, Yang L, Jiang H, Roth BL, Cherezov V, Stevens RC, Xu HE","Structural basis for molecular recognition at serotonin receptors.","Science","2013","340","610-4","GPCR","4iar 4iaq"
"2357","23480240","function","Hsueh KL, Tonelli M, Cai K, Westler WM, Markley JL","Electron Transfer Mechanism of the Rieske Protein from Thermus thermophilus from Solution Nuclear Magnetic Resonance Investigations.","Biochemistry","2013","52","2862-73","MPP",""
"2499","23480101","function","Andreas LB, Barnes AB, Corzilius B, Chou JJ, Miller EA, Caporini M, Rosay M, Griffin RG","Dynamic nuclear polarization study of inhibitor binding to the M2(18-60) proton transporter from influenza A.","Biochemistry","2013","52","2774-82","MPSbyNMR",""
"2562","23473845","function","Ruhe ZC, Low DA, Hayes CS","Bacterial contact-dependent growth inhibition.","Trends in microbiology","2013","21","230-7","UC4CDI",""
"2417","23468634","function","Chao MC, Kieser KJ, Minami S, Mavrici D, Aldridge BB, Fortune SM, Alber T, Rubin EJ","Protein complexes and proteolytic activation of the cell wall hydrolase RipA regulate septal resolution in mycobacteria.","PLos Pathogens","2013","9","e1003197","MTBI",""
"2353","23458690","function","Jastrzebska B, Ringler P, Palczewski K, Engel A","The rhodopsin-transducin complex houses two distinct rhodopsin molecules.","Journal of Structural Biology","2013","182","164-72","TEMIMPS",""
"2519","23451136","structure","Ho MC, Wilczek C, Bonanno JB, Xing L, Seznec J, Matsui T, Carter LG, Onikubo T, Kumar PR, Chan MK, Brenowitz M, Cheng RH, Reimer U, Almo SC, Shechter D","Structure of the arginine methyltransferase PRMT5-MEP50 reveals a mechanism for substrate specificity.","PLoS ONE","2013","8","e57008","NYSGRC",""
"2366","23436677","structure","Wu R, Gu M, Wilton R, Babnigg G, Kim Y, Pokkuluri PR, Szurmant H, Joachimiak A, Schiffer M.","Insight into the sporulation phosphorelay: Crystal structure of the sensor domain of Bacillus subtilis histidine kinase, KinD","Protein Science","2013","22","516-529","MCSG","4dbj 4dha 4dbi 4dak"
"2389","23415099","function","Stephens B, Handel TM","Chemokine receptor oligomerization and allostery.","Progress in molecular biology and translational science","2013","115","375-420","CHSAM",""
"2500","23396917","function","Niemann GS, Brown RN, Mushamiri IT, Nguyen NT, Taiwo R, Stufkens A, Smith RD, Adkins JN, McDermott JE, Heffron F","RNA type III secretion signals that require Hfq.","Journal of Bacteriology","2013","195","2119-25","PCSEP",""
"2332","23363572","structure","Kim Y, Cunningham MA, Mire J, Tesar C, Sacchettini J, Joachimiak A","NDM-1, the ultimate promiscuous enzyme: substrate recognition and catalytic mechanism.","FASEB Journal","2013","27","1917-27","MCSG+MTBI","4hl2 4h0d 4hl1 4hky"
"2416","23361328","function","DeJesus MA, Zhang YJ, Sassetti CM, Rubin EJ, Sacchettini JC, Ioerger TR","Bayesian analysis of gene essentiality based on sequencing of transposon insertion libraries.","Bioinformatics","2013","29","695-703","MTBI",""
"2325","23359647","structure","Singer AU, Schulze S, Skarina T, Xu X, Cui H, Eschen-Lippold L, Egler M, Srikumar T, Raught B, Lee J, Scheel D, Savchenko A, Bonas U","A Pathogen Type III Effector with a Novel E3 Ubiquitin Ligase Architecture.","PLos Pathogens","2013","9","e1003121","MCSG","4fcg 4fc9"
"2334","23349695","structure","Sureshan V, Deshpande CN, Boucher Y, Koenig JE, Stokes HW, Harrop SJ, Curmi PM, Mabbutt BC","Integron gene cassettes: a repository of novel protein folds with distinct interaction sites.","PLoS ONE","2013","8","e52934","MCSG","3fly 3fxh 3fy6 3if4 3imo 3jrt"
"2342","23341604","structure","Coudray N, Valvo S, Hu M, Lasala R, Kim C, Vink M, Zhou M, Provasi D, Filizola M, Tao J, Fang J, Penczek PA, Ubarretxena-Belandia I, Stokes DL","Inward-facing conformation of the zinc transporter YiiP revealed by cryoelectron microscopy.","Proceedings of the National Academy of Sciences of the United States of America","2013","110","2140-5","TEMIMPS","3j1z"
"2322","23333622","structure","Markley JL, Kim JH, Dai Z, Bothe JR, Cai K, Frederick RO, Tonelli M","Metamorphic Protein IscU Alternates Conformations in the Course of its Role as the Scaffold Protein for Iron-Sulfur Cluster Biosynthesis and Delivery.","FEBS Letters","2013","587","1172-1179","MPP","2l4x"
"2356","23330600","structure","Bjelic S, Nivón LG, Celebi-Ölçüm N, Kiss G, Rosewall CF, Lovick HM, Ingalls EL, Gallaher JL, Seetharaman J, Lew S, Montelione GT, Hunt JF, Michael FE, Houk KN, Baker D","Computational design of enone-binding proteins with catalytic activity for the morita-baylis-hillman reaction.","ACS Chemical Biology","2013","8","749-57","NESG",""
"2335","23320975","structure","Lohman JR, Bingman CA, Phillips GN, Shen B","Structure of the Bifunctional Acyltransferase/Decarboxylase LnmK from the Leinamycin Biosynthetic Pathway Revealing Novel Activity for a Double-Hot-Dog Fold.","Biochemistry","2013","52","902-11","NATPRO+NatPro","4hzn 4hzo 4hzp"
"2327","23303792","structure","Rossi P, Barbieri CM, Aramini JM, Bini E, Lee HW, Janjua H, Xiao R, Acton TB, Montelione GT","Structures of apo- and ssDNA-bound YdbC from Lactococcus lactis uncover the function of protein domain family DUF2128 and expand the single-stranded DNA-binding domain proteome.","Nucleic Acids Research","2013","41","2756-68","NESG",""
"2321","23301161","function","Jarecki BW, Makino S, Beebe ET, Fox BG, Chanda B","Function of Shaker potassium channels produced by cell-free translation upon injection into Xenopus oocytes.","Scientific reports","2013","3","1040","TMPC",""
"2413","23297216","structure","Zhu X, Yu W, McBride R, Li Y, Chen LM, Donis RO, Tong S, Paulson JC, Wilson IA","Hemagglutinin homologue from H17N10 bat influenza virus exhibits divergent receptor-binding and pH-dependent fusion activities.","Proceedings of the National Academy of Sciences of the United States of America","2013","110","1458-63","JCSG","4i78"
"2438","23277586","function","Zhuang T, Chen Q, Cho MK, Vishnivetskiy SA, Iverson TM, Gurevich VV, Sanders CR","Involvement of distinct arrestin-1 elements in binding to different functional forms of rhodopsin.","Proceedings of the National Academy of Sciences of the United States of America","2013","110","942-7","MPSbyNMR",""
"2323","23271805","structure","Baxter EL, Zuris JA, Wang C, Vo PL, Axelrod HL, Cohen AE, Paddock ML, Nechushtai R, Onuchic JN, Jennings PA","Allosteric control in a metalloprotein dramatically alters function.","Proceedings of the National Academy of Sciences of the United States of America","2013","110","948-53","JCSG","4ezf 4f28 4f1e 4f2c"
"2465","23261390","function","Swartz DJ, Weber J, Urbatsch IL","P-glycoprotein is fully active after multiple tryptophan substitutions.","Biochimica et biophysica acta","2013","1828","1159-68","TransportPDB",""
"2320","23255525","function","Aly KA, Beebe ET, Chan CH, Goren MA, Sepúlveda C, Makino S, Fox BG, Forest KT","Cell-free production of integral membrane aspartic acid proteases reveals zinc-dependent methyltransferase activity of the Pseudomonas aeruginosa prepilin peptidase PilD.","MicrobiologyOpen","2013","2","94-104","TMPC",""
"2769","23219464","structure","Persson H, Ye W, Wernimont A, Adams JJ, Koide A, Koide S, Lam R, Sidhu SS","CDR-H3 diversity is not required for antigen recognition by synthetic antibodies.","Journal of Molecular Biology","2013","425","803-11","CEBS","3pnw"
"2326","23167435","function","Kim DM, Zheng H, Huang YJ, Montelione GT, Hunt JF","ATPase active-site electrostatic interactions control the global conformation of the 100 kDa SecA translocase.","Journal of the American Chemical Society","2013","135","2999-3010","NESG",""
"2358","23161756","structure","Elkin SR, Kumar A, Price CW, Columbus L","A broad specificity nucleoside kinase from Thermoplasma acidophilum.","Proteins","2013","81","568-82","JCSG","3bf5"
"2293","23160728","structure","Mills JL, Acton TB, Xiao R, Everett JK, Montelione GT, Szyperski T","Solution NMR structure of the helicase associated domain BVU_0683(627-691) from Bacteroides vulgatus provides first structural coverage for protein domain family PF03457 and indicates domain binding to DNA.","Journal of Structural and Functional Genomics","2013","14","19-24","NESG",""
"2462","23140368","function","Hou J, Rajagopal M, Yu AS","Claudins and the kidney.","Annual review of physiology","2013","75","479-501","TJMP",""
"2316","23092247","structure","Montaner S, Kufareva I, Abagyan R, Gutkind JS","Molecular Mechanisms Deployed by Virally Encoded G Protein-Coupled Receptors in Human Diseases.","Annual review of pharmacology and toxicology","2013","53","331-354","CHSAM",""
"2314","22975405","function","Webb DR, Handel TM, Kretz-Rommel A, Stevens RC","Opportunities for functional selectivity in GPCR antibodies.","Accounts of Chemical Research","2013","85","147-52","CHSAM+GPCR",""
"2466","23236156","structure","Morse RP, Nikolakakis KC, Willett JL, Gerrick E, Low DA, Hayes CS, Goulding CW","Structural basis of toxicity and immunity in contact-dependent growth inhibition (CDI) systems.","Proceedings of the National Academy of Sciences of the United States of America","2012","109","21480-5","UC4CDI","4g6v 4g6u"
"2302","23143235","structure","Knapik AA, Petkowski JJ, Otwinowski Z, Cymborowski MT, Cooper DR, Chruszcz M, Krajewska WM, Minor W","Structure of Escherichia coli RutC, a member of the YjgF family and putative aminoacrylate peracid reductase of the rut operon.","Acta Crystallographica Section F: Structural Biology and Crystallization Communications","2012","68","1294-9","NYSGRC","3v4d"
"2307","23135467","structure","Koga N, Tatsumi-Koga R, Liu G, Xiao R, Acton TB, Montelione GT, Baker D","Principles for designing ideal protein structures.","Nature","2012","491","222-7","NESG",""
"2315","23116466","structure","Kufareva I, Chen YC, Ilatovskiy AV, Abagyan R","Compound activity prediction using models of binding pockets or ligand properties in 3D.","Curr Top Med Chem","2012","12","1869-1882","CHSAM",""
"2294","23110687","structure","Dai Z, Tonelli M, Markley JL","Metamorphic protein IscU changes conformation by cis-trans isomerizations of two peptidyl-prolyl peptide bonds.","Biochemistry","2012","51","9595-602","MPP","2l4x"
"2291","23086149","structure","Mancusso R, Gregorio GG, Liu Q, Wang DN","Structure and mechanism of a bacterial sodium-dependent dicarboxylate transporter.","Nature","2012","491","622-6","NYCOMPS","4f35"
"2387","23084990","function","Collins C, Guilluy C, Welch C, O'Brien ET, Hahn K, Superfine R, Burridge K, Tzima E","Localized tensional forces on PECAM-1 elicit a global mechanotransduction response via the integrin-RhoA pathway.","Current biology : CB","2012","22","2087-94","CELLMAT",""
"2435","23065903","function","Derr ND, Goodman BS, Jungmann R, Leschziner AE, Shih WM, Reck-Peterson SL","Tug-of-war in motor protein ensembles revealed with a programmable DNA origami scaffold.","Science","2012","338","662-5","MPSbyNMR",""
"2292","23062074","structure","Eletsky A, Jeong MY, Kim H, Lee HW, Xiao R, Pagliarini DJ, Prestegard JH, Winge DR, Montelione GT, Szyperski T","Solution NMR structure of yeast succinate dehydrogenase flavinylation factor Sdh5 reveals a putative Sdh1 binding site.","Biochemistry","2012","51","8475-7","MPP+NESG","2lm4"
"2472","23051748","structure","White JF, Noinaj N, Shibata Y, Love J, Kloss B, Xu F, Gvozdenovic-Jeremic J, Shah P, Shiloach J, Tate CG, Grisshammer R","Structure of the agonist-bound neurotensin receptor.","Nature","2012","490","508-13","NYCOMPS","4grv"
"2399","23042606","structure","Metzger LE, Lee JK, Finer-Moore JS, Raetz CR, Stroud RM","LpxI structures reveal how a lipid A precursor is synthesized.","Nature Structural & Molecular Biology","2012","19","1132-8","CSMP","4j6e 4ggm"
"2415","23028335","function","Zhang YJ, Ioerger TR, Huttenhower C, Long JE, Sassetti CM, Sacchettini JC, Rubin EJ","Global assessment of genomic regions required for growth in Mycobacterium tuberculosis.","PLos Pathogens","2012","8","e1002946","MTBI",""
"2289","23019356","structure","Koehn EM, Perissinotti LL, Moghram S, Prabhakar A, Lesley SA, Mathews II, Kohen A","Folate binding site of flavin-dependent thymidylate synthase.","Proceedings of the National Academy of Sciences of the United States of America","2012","109","15722-7","JCSG","4gt9 4gta 4gtb 4gtc 4gtd 4gte 4gtf 4gtl"
"2386","23007647","structure","Gingras AR, Liu JJ, Ginsberg MH","Structural basis of the junctional anchorage of the cerebral cavernous malformations complex.","The Journal of cell biology","2012","199","39-48","CELLMAT","3u7d"
"2278","22984442","structure","Kumar A, Möcklinghoff S, Yumoto F, Jaroszewski L, Farr CL, Grzechnik A, Nguyen P, Weichenberger CX, Chiu HJ, Klock HE, Elsliger MA, Deacon AM, Godzik A, Lesley SA, Conklin BR, Fletterick RJ, Wilson IA","Structure of a Novel Winged-Helix Like Domain from Human NFRKB Protein.","PLoS ONE","2012","7","e43761","JCSG+STEMCELL","3u21"
"2412","22982990","structure","Ekiert DC, Kashyap AK, Steel J, Rubrum A, Bhabha G, Khayat R, Lee JH, Dillon MA, O'Neil RE, Faynboym AM, Horowitz M, Horowitz L, Ward AB, Palese P, Webby R, Lerner RA, Bhatt RR, Wilson IA","Cross-neutralization of influenza A viruses mediated by a single antibody loop.","Nature","2012","489","526-32","JCSG","4fnk 4fnl 4fp8 4fqr"
"2338","22973046","structure","Kong L, Giang E, Nieusma T, Robbins JB, Deller MC, Stanfield RL, Wilson IA, Law M","Structure of hepatitis C virus envelope glycoprotein E2 antigenic site 412 to 423 in complex with antibody AP33.","Journal of Virology","2012","86","13085-8","JCSG","4g6a"
"2404","22971058","function","Jo E, Bhhatarai B, Repetto E, Guerrero M, Riley S, Brown SJ, Kohno Y, Roberts E, Schürer SC, Rosen H","Novel selective allosteric and bitopic ligands for the S1P(3) receptor.","ACS Chemical Biology","2012","7","1975-83","GPCR",""
"2317","22964305","structure","Dong M, Xu X, Ball AM, Makhoul JA, Lam PC, Pinon DI, Orry A, Sexton PM, Abagyan R, Miller LJ","Mapping spatial approximations between the amino terminus of secretin and each of the extracellular loops of its receptor using cysteine trapping.","FASEB Journal","2012","26","5092-105","CHSAM",""
"2459","22941046","function","Schlame M, Acehan D, Berno B, Xu Y, Valvo S, Ren M, Stokes DL, Epand RM","The physical state of lipid substrates provides transacylation specificity for tafazzin.","Nature Chemical Biology","2012","8","862-9","TEMIMPS",""
"2450","22935026","structure","Koellhoffer JF, Malashkevich VN, Harrison JS, Toro R, Bhosle RC, Chandran K, Almo SC, Lai JR","Crystal structure of the Marburg virus GP2 core domain in its postfusion conformation.","Biochemistry","2012","51","7665-75","NYSGRC","4g2k"
"2408","22927415","structure","Samanta D, Ramagopal UA, Rubinstein R, Vigdorovich V, Nathenson SG, Almo SC","Structure of Nectin-2 reveals determinants of homophilic and heterophilic interactions that control cell-cell adhesion.","Proceedings of the National Academy of Sciences of the United States of America","2012","109","14836-40","IFN+NYSGRC","3r0n"
"2378","22925578","structure","Michalska K, Chang C, Mack JC, Zerbs S, Joachimiak A, Collart FR.","Characterization of transport proteins for aromatic compounds derived from lignin: benzoate derivative binding proteins","Journal of Molecular Biology","2012","423","555-575","MCSG","4f06 4eyk 4eyg 4ey3 4evs 4evr 4evq"
"2411","22878502","structure","Dreyfus C, Laursen NS, Kwaks T, Zuijdgeest D, Khayat R, Ekiert DC, Lee JH, Metlagel Z, Bujny MV, Jongeneelen M, van der Vlugt R, Lamrani M, Korse HJ, Geelen E, Sahin Ö, Sieuwerts M, Brakenhoff JP, Vogels R, Li OT, Poon LL, Peiris M, Koudstaal W, Ward AB, Wilson IA, Goudsmit J, Friesen RH","Highly conserved protective epitopes on influenza B viruses.","Science","2012","337","1343-8","JCSG","4fqh 4fqi 4fqj 4fqk 4fql 4fqm 4fqy 4fqv"
"2256","22876860","structure","Ramelot TA, Rossi P, Forouhar F, Lee HW, Yang Y, Ni S, Unser S, Lew S, Seetharaman J, Xiao R, Acton TB, Everett JK, Prestegard JH, Hunt JF, Montelione GT, Kennedy MA","Structure of a specialized acyl carrier protein essential for lipid a biosynthesis with very long-chain Fatty acids in open and closed conformations.","Biochemistry","2012","51","7239-49","NESG",""
"2259","22865330","structure","Feldmann EA, Seetharaman J, Ramelot TA, Lew S, Zhao L, Hamilton K, Ciccosanti C, Xiao R, Acton TB, Everett JK, Tong L, Montelione GT, Kennedy MA","Solution NMR and X-ray crystal structures of Pseudomonas syringae Pspto_3016 from protein domain family PF04237 (DUF419) adopt a \"double wing\" DNA binding motif.","Journal of Structural and Functional Genomics","2012","13","155-62","NESG",""
"2254","22844465","structure","Xu Q, van Wezel GP, Chiu HJ, Jaroszewski L, Klock HE, Knuth MW, Miller MD, Lesley SA, Godzik A, Elsliger MA, Deacon AM, Wilson IA","Structure of an MmyB-like regulator from C. aurantiacus, member of a new transcription factor family linked to antibiotic metabolism in actinomycetes.","PLoS ONE","2012","7","e41359","JCSG","3pxp"
"2258","22843345","structure","Vorobiev SM, Neely H, Yu B, Seetharaman J, Xiao R, Acton TB, Montelione GT, Hunt JF","Crystal structure of a catalytically active GG(D/E)EF diguanylate cyclase domain from Marinobacter aquaeolei with bound c-di-GMP product.","Journal of Structural and Functional Genomics","2012","13","177-83","NESG",""
"2257","22843344","structure","Swapna GV, Rossi P, Montelione AF, Benach J, Yu B, Abashidze M, Seetharaman J, Xiao R, Acton TB, Tong L, Montelione GT","Three structural representatives of the PF06855 protein domain family from Staphyloccocus aureus and Bacillus subtilis have SAM domain-like folds and different functions.","Journal of Structural and Functional Genomics","2012","13","163-70","NESG",""
"2492","22842900","structure","Baconguis I, Gouaux E","Structural plasticity and dynamic selectivity of acid-sensing ion channel-spider toxin complexes.","Nature","2012","489","400-5","NYCOMPS","4fz1"
"2299","22837698","structure","Yang Y, Ramelot TA, Cort JR, Garcia M, Yee A, Arrowsmith CH, Kennedy MA","Solution NMR Structure of Hypothetical Protein CV_2116 Encoded by a Viral Prophage Element in Chromobacterium violaceum.","International journal of molecular sciences","2012","13","7354-64","NESG",""
"2473","22836580","structure","Wang H, Gouaux E","Substrate binds in the S1 site of the F253A mutant of LeuT, a neurotransmitter sodium symporter homologue.","EMBO Reports","2012","13","861-6","NYCOMPS","4fxz 4fy0"
"2398","22807325","function","Varrin-Doyer M, Spencer CM, Schulze-Topphoff U, Nelson PA, Stroud RM, Cree BA, Zamvil SS","Aquaporin 4-specific T cells in neuromyelitis optica exhibit a Th17 bias and recognize Clostridium ABC transporter.","Annals of neurology","2012","72","53-64","CSMP",""
"2240","22798613","structure","Liu W, Chun E, Thompson AA, Chubukov P, Xu F, Katritch V, Han GW, Roth CB, Heitman LH, IJzerman AP, Cherezov V, Stevens RC","Structural basis for allosteric regulation of GPCRs by sodium ions.","Science","2012","337","232-6","GPCR","4eiy"
"2274","22782893","structure","Kim JH, Tonelli M, Frederick RO, Chow DC, Markley JL","Specialized Hsp70 chaperone (HscA) binds preferentially to the disordered form, whereas J-protein (HscB) binds preferentially to the structured form of the iron-sulfur cluster scaffold protein (IscU).","Journal of Biological Chemistry","2012","287","31406-13","MPP","2l4x"
"2232","22740688","structure","Aziz A, Hess JF, Budamagunta MS, Voss JC, Kuzin AP, Huang YJ, Xiao R, Montelione GT, Fitzgerald PG, Hunt JF","The Structure of Vimentin Linker 1 and Rod 1B Domains Characterized by Site-directed Spin-labeling Electron Paramagnetic Resonance (SDSL-EPR) and X-ray Crystallography.","Journal of Biological Chemistry","2012","287","28349-61","NESG",""
"2275","22734684","structure","Hae Kim J, Tonelli M, Kim T, Markley JL","Three-Dimensional Structure and Determinants of Stability of the Iron-Sulfur Cluster Scaffold Protein IscU from Escherichia coli.","Biochemistry","2012","51","5557-5563","MPP","2l4x"
"2228","22733730","structure","Levin EJ, Cao Y, Enkavi G, Quick M, Pan Y, Tajkhorshid E, Zhou M","Structure and permeation mechanism of a mammalian urea transporter.","Proceedings of the National Academy of Sciences of the United States of America","2012","109","11194-11199","NYCOMPS","4ezc 4ezd"
"2464","22722930","function","Zhang X, He X, Baker J, Tama F, Chang G, Wright SH","Twelve transmembrane helices form the functional core of mammalian MATE1 (multidrug and toxin extruder 1) protein.","Journal of Biological Chemistry","2012","287","27971-82","TransportPDB",""
"2340","22715947","structure","Yang DC, Tan K, Joachimiak A, Bernhardt TG","A conformational switch controls cell wall-remodelling enzymes required for bacterial cell division.","Molecular Microbiology","2012","85","768-81","MCSG","3ne8"
"2432","22708632","function","Mittendorf KF, Deatherage CL, Ohi MD, Sanders CR","Tailoring of membrane proteins by alternative splicing of pre-mRNA.","Biochemistry","2012","51","5541-56","MPSbyNMR",""
"2199","22693626","structure","Wu Y, Punta M, Xiao R, Acton TB, Sathyamoorthy B, Dey F, Fischer M, Skerra A, Rost B, Montelione GT, Szyperski T","NMR Structure of Lipoprotein YxeF from Bacillus subtilis Reveals a Calycin Fold and Distant Homology with the Lipocalin Blc from Escherichia coli.","PLoS ONE","2012","7","e37404","NESG",""
"2277","22688446","structure","Singh S, Phillips GN, Thorson JS","The structural biology of enzymes involved in natural product glycosylation.","Natural product reports","2012","29","1201-37","NATPRO+NatPro",""
"2218","22677715","structure","Majorek KA, Porebski PJ, Dayal A, Zimmerman MD, Jablonska K, Stewart AJ, Chruszcz M, Minor W","Structural and immunologic characterization of bovine, horse, and rabbit serum albumins.","Accounts of Chemical Research","2012","52","174-182","NYSGRC","3v03 3v08 3v09"
"2247","22645316","function","Trinidad JC, Barkan DT, Gulledge BF, Thalhammer A, Sali A, Schoepfer R, Burlingame AL","Global identification and characterization of both O-GlcNAcylation and phosphorylation at the murine synapse.","Molecular & Cellular Proteomics","2012","11","215-229","NYSGRC",""
"2276","22641504","structure","Knapik AA, Petkowski JJ, Otwinowski Z, Cymborowski MT, Cooper DR, Majorek KA, Chruszcz M, Krajewska WM, Minor W","A multi-faceted analysis of RutD reveals a novel family of α/β hydrolases.","Proteins","2012","80","2359-68","NYSGRC",""
"2220","22596163","structure","Thompson AA, Liu W, Chun E, Katritch V, Wu H, Vardy E, Huang XP, Trapella C, Guerrini R, Calo G, Roth BL, Cherezov V, Stevens RC","Structure of the nociceptin/orphanin FQ receptor in complex with a peptide mimetic.","Nature","2012","485","395-9","GPCR","4ea3"
"2219","22592539","note","Aramini JM, Petrey D, Lee DY, Janjua H, Xiao R, Acton TB, Everett JK, Montelione GT","Solution NMR structure of Alr2454 from Nostoc sp. PCC 7120, the first structural representative of Pfam domain family PF11267.","Journal of Structural and Functional Genomics","2012","13","171-6","NESG",""
"2403","22545963","function","Ferrero DM, Wacker D, Roque MA, Baldwin MW, Stevens RC, Liberles SD","Agonists for 13 trace amine-associated receptors provide insight into the molecular basis of odor selectivity.","ACS Chemical Biology","2012","7","1184-9","GPCR",""
"2244","22544723","structure","Sampathkumar P, Kim SJ, Manglicmot D, Bain KT, Gilmore J, Gheyi T, Phillips J, Pieper U, Fernandez-Martinez J, Franke JD, Matsui T, Tsuruta H, Atwell S, Thompson DA, Emtage JS, Wasserman SR, Rout MP, Sali A, Sauder JM, Almo SC, Burley SK","Atomic structure of the nuclear pore complex targeting domain of a Nup116 homologue from the yeast, Candida glabrata.","Proteins","2012","80","2110-6","NPCXstals+NYSGRC","3nf5"
"2397","22529956","structure","Egea PF, Muller-Steffner H, Kuhn I, Cakir-Kiefer C, Oppenheimer NJ, Stroud RM, Kellenberger E, Schuber F","Insights into the mechanism of bovine CD38/NAD+glycohydrolase from the X-ray structures of its Michaelis complex and covalently-trapped intermediates.","PLoS ONE","2012","7","e34918","CSMP","3p5s 3kou 3ghh 3gh3 3gc6"
"2361","22528523","structure","Bitto E, Kim do J, Bingman CA, Kim HJ, Han BW, Phillips GN","Crystal structure of tandem ACT domain-containing protein ACTP from Galdieria sulphuraria.","Proteins","2012","80","2105-9","CESG","2nyi"
"2341","22519667","structure","Lemak S, Tchigvintsev A, Petit P, Flick R, Singer AU, Brown G, Evdokimova E, Egorova O, Gonzalez CF, Chernikova TN, Yakimov MM, Kube M, Reinhardt R, Golyshin PN, Savchenko A, Yakunin AF","Structure and activity of the cold-active and anion-activated carboxyl esterase OLEI01171 from the oil-degrading marine bacterium Oleispira antarctica.","Biochemical Journal","2012","445","193-203","MCSG","3s8y"
"2211","22505259","structure","Brunger AT, Das D, Deacon AM, Grant J, Terwilliger TC, Read RJ, Adams PD, Levitt M, Schröder GF","Application of DEN refinement and automated model building to a difficult case of molecular-replacement phasing: the structure of a putative succinyl-diaminopimelate desuccinylase from Corynebacterium glutamicum.","Acta Crystallographica Section D: Biological Crystallography","2012","68","391-403","JCSG","3tx8"
"2200","22497251","structure","Aramini JM, Hamilton K, Rossi P, Ertekin A, Lee HW, Lemak A, Wang H, Xiao R, Acton TB, Everett JK, Montelione GT","Solution NMR structure, backbone dynamics, and heme-binding properties of a novel cytochrome c maturation protein CcmE from Desulfovibrio vulgaris.","Biochemistry","2012","51","3705-7","NESG",""
"2206","22493430","structure","Osipiuk J, Mulligan R, Bargassa M, Hamilton JE, Cunningham MA, Joachimiak A","Characterization of member of DUF1888 protein family, self-cleaving and self-assembling endopeptidase.","Journal of Biological Chemistry","2012","287","19452-61","MCSG","3n55 3nji 3njh 3njg 3njf 3njj 3njk 3njl 3njm 3njn"
"2223","22486652","function","Tosh DK, Phan K, Gao ZG, Gakh AA, Xu F, Deflorian F, Abagyan R, Stevens RC, Jacobson KA, Katritch V","Optimization of adenosine 5'-carboxamide derivatives as adenosine receptor agonists using structure-based ligand design and fragment screening.","Journal of Medicinal Chemistry","2012","55","4297-308","CHSAM+GPCR",""
"2445","22472602","structure","Sciara G, Mancia F","Highlights from recently determined structures of membrane proteins: a focus on channels and transporters.","Current Opinion in Structural Biology","2012","22","476-81","NYCOMPS",""
"2217","22467785","structure","Xu Q, Göhler AK, Kosfeld A, Carlton D, Chiu HJ, Klock HE, Knuth MW, Miller MD, Elsliger MA, Deacon AM, Godzik A, Lesley SA, Jahreis K, Wilson IA","The Structure of Mlc Titration Factor A (MtfA/YeeI) Reveals a Prototypical Zinc Metallopeptidase Related to Anthrax Lethal Factor.","Journal of Bacteriology","2012","194","2987-99","JCSG","3dl1 3khi"
"2385","22457811","function","Kahner BN, Kato H, Banno A, Ginsberg MH, Shattil SJ, Ye F","Kindlins, integrin activation and the regulation of talin recruitment to αIIbβ3.","PLoS ONE","2012","7","e34056","CELLMAT",""
"2444","22457068","function","Andresen C, Helander S, Lemak A, Farès C, Csizmok V, Carlsson J, Penn LZ, Forman-Kay JD, Arrowsmith CH, Lundström P, Sunnerhagen M","Transient structure and dynamics in the disordered c-Myc transactivation domain affect Bin1 binding.","Nucleic Acids Research","2012","40","6353-66","NESG",""
"2183","22439787","structure","Gonzalez CF, Tchigvintsev A, Brown G, Flick R, Evdokimova E, Xu X, Osipiuk J, Cuff ME, Lynch S, Joachimiak A, Savchenko A, Yakunin AF","Structure and activity of the Pseudomonas aeruginosa hotdog-fold thioesterases PA5202 and PA2801.","Biochemical Journal","2012","444","445-55","MCSG","3qy3 1zki"
"2184","22437504","structure","Wu H, Wacker D, Mileni M, Katritch V, Han GW, Vardy E, Liu W, Thompson AA, Huang XP, Carroll FI, Mascarella SW, Westkaemper RB, Mosier PD, Roth BL, Cherezov V, Stevens RC","Structure of the human κ-opioid receptor in complex with JDTic","Nature","2012","485","327-32","GPCR","4djh"
"2192","22427660","structure","Ertekin A, Aramini JM, Rossi P, Leonard PG, Janjua H, Xiao R, Maglaqui M, Lee HW, Prestegard JH, Montelione GT","Human cyclin-dependent kinase 2-associated protein 1 (CDK2AP1) is dimeric in its disulfide-reduced state, with natively disordered N-terminal region.","Journal of Biological Chemistry","2012","287","16541-9","NESG",""
"2191","22422653","structure","Snyder DA, Aramini JM, Yu B, Huang YJ, Xiao R, Cort JR, Shastry R, Ma LC, Liu J, Rost B, Acton TB, Kennedy MA, Montelione GT","Solution NMR structure of the ribosomal protein RP-L35Ae from Pyrococcus furiosus.","Proteins","2012","80","1901-6","NESG",""
"2189","22411095","structure","Levisson M, Han GW, Deller MC, Xu Q, Biely P, Hendriks S, Ten Eyck LF, Flensburg C, Roversi P, Miller MD, McMullan D, von Delft F, Kreusch A, Deacon AM, van der Oost J, Lesley SA, Elsliger MA, Kengen SW, Wilson IA","Functional and structural characterization of a thermostable acetyl esterase from Thermotoga maritima.","Proteins","2012","80","1545-59","JCSG","1vlq 3m81 3m82 3m83"
"2177","22408253","structure","Nusca TD, Kim Y, Maltseva N, Lee JY, Eschenfeldt W, Stols L, Schofield MM, Scaglione JB, Dixon SD, Oves-Costales D, Challis GL, Hanna PC, Pfleger BF, Joachimiak A, Sherman DH","Functional and structural analysis of the siderophore synthetase AsbB through reconstitution of the petrobactin biosynthetic pathway from Bacillus anthracis.","Journal of Biological Chemistry","2012","287","16058-72","MCSG","3to3"
"2225","22407320","structure","Czyzewski BK, Wang DN","Identification and characterization of a bacterial hydrosulphide ion channel.","Nature","2012","483","494-7","NYCOMPS","3tdp 3tdr 3tdo 3te2 3tdx 3te1 3te0 3tds"
"2305","22350524","structure","Goral AM, Tkaczuk KL, Chruszcz M, Kagan O, Savchenko A, Minor W","Crystal structure of a putative isochorismatase hydrolase from Oleispira antarctica.","Journal of Structural and Functional Genomics","2012","13","27-36","MCSG","3lqy"
"2167","22344443","structure","Hanson MA, Roth CB, Jo E, Griffith MT, Scott FL, Reinhart G, Desale H, Clemons B, Cahalan SM, Schuerer SC, Sanna MG, Han GW, Kuhn P, Rosen H, Stevens RC","Crystal structure of a lipid G protein-coupled receptor.","Science","2012","335","851-5","GPCR","3v2w 3v3y"
"2176","22306468","structure","Ciesielski SJ, Schilke BA, Osipiuk J, Bigelow L, Mulligan R, Majewska J, Joachimiak A, Marszalek J, Craig EA, Dutkiewicz R","Interaction of j-protein co-chaperone jac1 with fe-s scaffold isu is indispensable in vivo and conserved in evolution.","Journal of Molecular Biology","2012","417","1-12","MCSG","3uo2 3uo3"
"2165","22295882","function","Mishanina TV, Koehn EM, Conrad JA, Palfey BA, Lesley SA, Kohen A","Trapping of an intermediate in the reaction catalyzed by flavin-dependent thymidylate synthase.","Journal of the American Chemical Society","2012","134","4442-8","JCSG",""
"2179","22284390","structure","Porebski PJ, Klimecka M, Chruszcz M, Nicholls RA, Murzyn K, Cuff ME, Xu X, Cymborowski M, Murshudov GN, Savchenko A, Edwards A, Minor W","Structural characterization of Helicobacter pylori dethiobiotin synthetase reveals differences between family members","FEBS Journal","2012","279","1093-1105","MCSG","2qmo 3mle 3qxc 3qxh 3qxj 3qxs 3qxx 3qy0"
"2168","22267580","function","Liu JJ, Horst R, Katritch V, Stevens RC, Wüthrich K","Biased signaling pathways in β2-adrenergic receptor characterized by 19F-NMR.","Science","2012","335","1106-10","GPCR",""
"2474","22245965","structure","Wang H, Elferich J, Gouaux E","Structures of LeuT in bicelles define conformation and substrate binding in a membrane-like context.","Nature Structural & Molecular Biology","2012","19","212-9","NYCOMPS","3usg 3usi 3usj 3usk 3usl 3usm 3uso 3usp"
"2181","22239271","function","Perez-Cheeks BA, Planet PJ, Sarkar IN, Clock SA, Xu Q, Figurski DH","The product of tadZ, a new member of the parA/minD superfamily, localizes to a pole in Aggregatibacter actinomycetemcomitans.","Molecular Microbiology","2012","83","694-711","JCSG",""
"2151","22223187","note","Eletsky A, Petrey D, Zhang QC, Lee HW, Acton TB, Xiao R, Everett JK, Prestegard JH, Honig B, Montelione GT, Szyperski T","Solution NMR structures reveal unique homodimer formation by a winged helix-turn-helix motif and provide first structures for protein domain family PF10771.","Journal of Structural and Functional Genomics","2012","13","1-7","NESG",""
"2164","22211578","function","Xu Q, Christen B, Chiu HJ, Jaroszewski L, Klock HE, Knuth MW, Miller MD, Elsliger MA, Deacon AM, Godzik A, Lesley SA, Figurski DH, Shapiro L, Wilson IA","Structure of the pilus assembly protein TadZ from Eubacterium rectale: implications for polar localization.","Molecular Microbiology","2012","83","712-727","JCSG","3fkq"
"2273","22203963","structure","Kim JH, Tonelli M, Markley JL","Disordered form of the scaffold protein IscU is the substrate for iron-sulfur cluster assembly on cysteine desulfurase.","Proceedings of the National Academy of Sciences of the United States of America","2012","109","454-9","MPP","2l4x"
"2152","22198206","note","Eletsky A, Acton TB, Xiao R, Everett JK, Montelione GT, Szyperski T","Solution NMR structures reveal a distinct architecture and provide first structures for protein domain family PF04536.","Journal of Structural and Functional Genomics","2012","13","9-14","NESG",""
"2158","22191472","structure","Singer AU, Wu B, Yee A, Houliston S, Xu X, Cui H, Skarina T, Garcia M, Semesi A, Arrowsmith CH, Savchenko A","Structural analysis of HopPmaL reveals the presence of a second adaptor domain common to the HopAB family of Pseudomonas syringae type III effectors.","Biochemistry","2012","51","1-3","NESG","3svi 3tjy 2lf3 2lf6"
"2236","22178611","function","Atta M, Arragain S, Fontecave M, Mulliez E, Hunt JF, Luff JD, Forouhar F","The methylthiolation reaction mediated by the Radical-SAM enzymes.","Biochimica et biophysica acta","2012","1824","1223-30","NESG",""
"2156","22138995","structure","Sela DA, Garrido D, Lerno L, Wu S, Tan K, Eom HJ, Joachimiak A, Lebrilla CB, Mills DA","Bifidobacterium longum subsp. infantis ATCC 15697 α-fucosidases are active on fucosylated human milk oligosaccharides.","Applied and environmental microbiology","2012","78","795-803","MCSG","3mo4"
"2382","22133431","structure","Schmier BJ, Seetharaman J, Deutscher MP, Hunt JF, Malhotra A","The structure and enzymatic properties of a novel RNase II family enzyme from Deinococcus radiodurans.","Journal of Molecular Biology","2012","415","547-59","NESG",""
"2160","22128181","structure","Tchigvintsev A, Singer A, Brown G, Flick R, Evdokimova E, Tan K, Gonzalez CF, Savchenko A, Yakunin AF","Biochemical and structural studies of uncharacterized protein PA0743 from Pseudomonas aeruginosa revealed NAD+-dependent L-serine dehydrogenase.","Journal of Biological Chemistry","2012","287","1874-83","MCSG","3obb 3q3c"
"2235","22116783","note","Ramelot TA, Yang Y, Xiao R, Acton TB, Everett JK, Montelione GT, Kennedy MA","Solution NMR structure of BT_0084, a conjugative transposon lipoprotein from Bacteroides thetaiotamicron.","Proteins","2012","80","667-70","NESG",""
"2130","22113821","structure","Feldmann EA, Ramelot TA, Yang Y, Xiao R, Acton TB, Everett JK, Montelione GT, Kennedy MA","Solution NMR structure of Asl3597 from Nostoc sp. PCC7120, the first structure from protein domain family PF12095, reveals a novel fold.","Proteins","2012","80","671-5","NESG",""
"2146","22095752","function","Gold MG, Reichow SL, O'Neill SE, Weisbrod CR, Langeberg LK, Bruce JE, Gonen T, Scott JD","AKAP2 anchors PKA with aquaporin-0 to support ocular lens transparency.","Accounts of Chemical Research","2012","4","15-26","TEMIMPS",""
"2170","22071255","function","Gabrielsen M, Kurczab R, Ravna AW, Kufareva I, Abagyan R, Chilmonczyk Z, Bojarski AJ, Sylte I","Molecular mechanism of serotonin transporter inhibition elucidated by a new flexible docking protocol.","Accounts of Chemical Research","2012","47","24-37","CHSAM+GPCR",""
"2194","22065580","structure","Pastore C, Topalidou I, Forouhar F, Yan AC, Levy M, Hunt JF","Crystal structure and RNA binding properties of the RNA recognition motif (RRM) and AlkB domains in human AlkB homolog 8 (ABH8), an enzyme catalyzing tRNA hypermodification.","Journal of Biological Chemistry","2012","287","2130-43","NESG","3thp 3tht"
"2119","21953935","structure","Burgie SE, Bingman CA, Soni AB, Phillips GN","Structural characterization of human Uch37.","Proteins","2012","80","649-654","CESG","3ihr"
"2118","21933118","structure","Vorobiev SM, Huang YJ, Seetharaman J, Xiao R, Acton TB, Montelione GT, Tong L","Human retinoblastoma binding protein 9, a serine hydrolase implicated in pancreatic cancers.","Protein and peptide letters","2012","19","194-7","NESG",""
"2081","21744012","function","Forlani G, Petrollino D, Fusetti M, Romanini L, Nocek B, Joachimiak A, Berlicki L, Kafarski P","Δ1-pyrroline-5-carboxylate reductase as a new target for therapeutics: inhibition of the enzyme from Streptococcus pyogenes and effects in vivo.","Amino Acids","2012","42","2283-91","MCSG",""
"2159","22215998","function","Zhang Y, Zagnitko O, Rodionova I, Osterman A, Godzik A","The FGGY Carbohydrate Kinase Family: Insights into the Evolution of Functional Specificities.","PLoS Computational Biology","2011","7","e1002318","JCSG",""
"2163","22153511","structure","Aksyuk AA, Kurochkina LP, Fokine A, Forouhar F, Mesyanzhinov VV, Tong L, Rossmann MG","Structural conservation of the myoviridae phage tail sheath protein fold.","Structure","2011","19","1885-94","NESG",""
"2204","22139148","structure","Ni S, McGookey ME, Tinch SL, Jones AN, Jayaraman S, Tong L, Kennedy MA","The 1.7 Å resolution structure of At2g44920, a pentapeptide-repeat protein in the thylakoid lumen of Arabidopsis thaliana.","Acta Crystallographica Section F: Structural Biology and Crystallization Communications","2011","67","1480-4","NESG",""
"2129","22102225","structure","Forouhar F, Saadat N, Hussain M, Seetharaman J, Lee I, Janjua H, Xiao R, Shastry R, Acton TB, Montelione GT, Tong L","A large conformational change in the putative ATP pyrophosphatase PF0828 induced by ATP binding.","Acta Crystallographica Section F: Structural Biology and Crystallization Communications","2011","67","1323-7","NESG",""
"2283","22078564","structure","Pielak RM, Oxenoid K, Chou JJ.","Structural investigation of rimantadine inhibition of the AM2-BM2 chimera channel of influenza viruses","Structure","2011","19","1655-63","MPSbyNMR","2ljc"
"2429","22078496","structure","Nam Y, Chen C, Gregory RI, Chou JJ, Sliz P","Molecular basis for interaction of let-7 microRNAs with Lin28.","Cell","2011","147","1080-91","MPSbyNMR","3ts2 3ts0 3trz"
"2205","22049338","structure","Devarakonda S, Gupta K, Chalmers MJ, Hunt JF, Griffin PR, Van Duyne GD, Spiegelman BM","Disorder-to-order transition underlies the structural basis for the assembly of a transcriptionally active PGC-1α/ERRγ complex.","Proceedings of the National Academy of Sciences of the United States of America","2011","108","18678-83","NESG",""
"2480","22041449","structure","Brasch J, Harrison OJ, Ahlsen G, Liu Q, Shapiro L","Crystal structure of the ligand binding domain of netrin G2.","Journal of Molecular Biology","2011","414","723-34","NYCOMPS","3tbd"
"2282","22034093","structure","Reckel S, Gottstein D, Stehle J, Löhr F, Verhoefen MK, Takeda M, Silvers R, Kainosho M, Glaubitz C, Wachtveitl J, Bernhard F, Schwalbe H, Güntert P, Dötsch V.","Solution NMR structure of proteorhodopsin","Angewandte Chemie International Edition in English","2011","50","11942-11946","MPSbyNMR","2l6x"
"2162","22009198","structure","Beloglazova N, Petit P, Flick R, Brown G, Savchenko A, Yakunin AF","Structure and activity of the Cas3 HD nuclease MJ0384, an effector enzyme of the CRISPR interference.","EMBO Journal","2011","30","4616-27","MCSG","4s4l"
"2122","21998307","structure","Singarapu KK, Tonelli M, Chow DC, Frederick RO, Westler WM, Markley JL","Structural characterization of Hsp12, the heat shock protein from Saccharomyces cerevisiae, in aqueous solution where it is intrinsically disordered and in detergent micelles where it is locally α-helical.","Journal of Biological Chemistry","2011","286","43447-53","CESG","2ljl"
"2121","21987796","structure","Chang A, Singh S, Helmich KE, Goff RD, Bingman CA, Thorson JS, Phillips GN","Complete set of glycosyltransferase structures in the calicheamicin biosynthetic pathway reveals the origin of regiospecificity.","Proceedings of the National Academy of Sciences of the United States of America","2011","108","17649-54","CESG+NatPro","3otg 3oth 3oti 3rsc"
"2216","21965687","structure","Luthra A, Zhu G, Desrosiers DC, Eggers CH, Mulay V, Anand A, McArthur FA, Romano FB, Caimano MJ, Heuck AP, Malkowski MG, Radolf JD","The transition from closed to open conformation of Treponema pallidum outer membrane-associated lipoprotein TP0453 involves membrane sensing and integration by two amphipathic helices.","Journal of Biological Chemistry","2011","286","41656-68","MPSBC+NESG",""
"2111"," 21931780","structure","Kim Y, Tesar C, Mire J, Jedrzejczak R, Binkowski A, Babnigg G, Sacchettini J, Joachimiak A.","Structure of Apo- and Monometalated Forms of NDM-1-A Highly Potent Carbapenem-Hydrolyzing Metallo-β-Lactamase","PLoS ONE","2011","6","e24621","MCSG+MTBI","3rkj 3rkk 3sbl 3sfp"
"2127","21925606","structure","Jastrzebska B, Ringler P, Lodowski DT, Moiseenkova-Bell V, Golczak M, Müller SA, Palczewski K, Engel A","Rhodopsin-transducin heteropentamer: Three-dimensional structure and biochemical characterization.","Journal of Structural Biology","2011","176","387-394","TEMIMPS",""
"2395","21925269","function","Chaudhary S, Pak JE, Pedersen BP, Bang LJ, Zhang LB, Ngaw SM, Green RG, Sharma V, Stroud RM","Efficient expression screening of human membrane proteins in transiently transfected Human Embryonic Kidney 293S cells.","Methods","2011","55","273-80","CSMP",""
"2105","21915915","structure","Han BW, Malone TE, Kim do J, Bingman CA, Kim HJ, Fox BG, Phillips GN","Crystal structure of Arabidopsis thaliana 12-oxophytodienoate reductase isoform 3 in complex with 8-iso prostaglandin A(1).","Proteins","2011","79","3236-41","CESG","2g5w"
"2145","21905121","note","Aramini JM, Rossi P, Fischer M, Xiao R, Acton TB, Montelione GT","Solution NMR structure of VF0530 from Vibrio fischeri reveals a nucleic acid-binding function.","Proteins","2011","79","2988-91","NESG",""
"2114","21904870","structure","Yang Y, Ramelot TA, Cort JR, Wang H, Ciccosanti C, Jiang M, Janjua H, Acton TB, Xiao R, Everett JK, Montelione GT, Kennedy MA","Solution NMR structure of Dsy0195 homodimer from Desulfitobacterium hafniense: first structure representative of the YabP domain family of proteins involved in spore coat assembly.","Journal of Structural and Functional Genomics","2011","12","175-9","NESG",""
"2188","21903279","function","Katritch V, Abagyan R.","GPCR agonist binding revealed by modeling and crystallography.","Accounts of Chemical Research","2011","32","637-43","CHSAM+GPCR",""
"2215","21899277","function","Goren MA, Fox BG, Bangs JD","Amino acid determinants of substrate selectivity in the Trypanosoma brucei sphingolipid synthase family.","Biochemistry","2011","50","8853-61","TMPC",""
"2172","21889352","function","West GM, Chien EY, Katritch V, Gatchalian J, Chalmers MJ, Stevens RC, Griffin PR","Ligand-dependent perturbation of the conformational ensemble for the GPCR β2 adrenergic receptor revealed by HDX.","Structure","2011","19","1424-32","GPCR",""
"2394","21885739","structure","Schlessinger A, Geier E, Fan H, Irwin JJ, Shoichet BK, Giacomini KM, Sali A","Structure-based discovery of prescription drugs that interact with the norepinephrine transporter, NET.","Proceedings of the National Academy of Sciences of the United States of America","2011","108","15810-5","CSMP+EFI","2a65"
"2360","21849506","structure","Peterson FC, Chen D, Lytle BL, Rossi MN, Ahel I, Denu JM, Volkman BF","Orphan macrodomain protein (human C6orf130) is an O-acyl-ADP-ribose deacylase: solution structure and catalytic properties.","Journal of Biological Chemistry","2011","286","35955-65","CESG","2lgr 2l8r"
"2102","21828055","structure","Lowery J, Szul T, Seetharaman J, Jian X, Su M, Forouhar F, Xiao R, Acton TB, Montelione GT, Lin H, Wright JW, Lee E, Holloway ZG, Randazzo PA, Tong L, Sztul E","Novel C-terminal Motif within Sec7 Domain of Guanine Nucleotide Exchange Factors Regulates ADP-ribosylation Factor (ARF) Binding and Activation.","Journal of Biological Chemistry","2011","286","36898-906","NESG",""
"2458","21820315","structure","Allen GS, Wu CC, Cardozo T, Stokes DL","The architecture of CopA from Archeaoglobus fulgidus studied by cryo-electron microscopy and computational docking.","Structure","2011","19","1219-32","TEMIMPS","3j09 3j08"
"2104","21808041","structure","Guan R, Ma LC, Leonard PG, Amer BR, Sridharan H, Zhao C, Krug RM, Montelione GT","Structural basis for the sequence-specific recognition of human ISG15 by the NS1 protein of influenza B virus.","Proceedings of the National Academy of Sciences of the United States of America","2011","108","13468-73","NESG",""
"2096","21799766","structure","Xu Q, Rawlings ND, Chiu HJ, Jaroszewski L, Klock HE, Knuth MW, Miller MD, Elsliger MA, Deacon AM, Godzik A, Lesley SA, Wilson IA","Structural Analysis of Papain-Like NlpC/P60 Superfamily Enzymes with a Circularly Permuted Topology Reveals Potential Lipid Binding Sites.","PLoS ONE","2011","6","e22013","JCSG",""
"2097","21799754","structure","Xu Q, Rawlings ND, Farr CL, Chiu HJ, Grant JC, Jaroszewski L, Klock HE, Knuth MW, Miller MD, Weekes D, Elsliger MA, Deacon AM, Godzik A, Lesley SA, Wilson IA","Structural and sequence analysis of imelysin-like proteins implicated in bacterial iron uptake.","PLoS ONE","2011","6","e21875","JCSG",""
"2112","21795809","structure","Michalska K, Cuff ME, Tesar C, Feldmann B, Joachimiak A","Structure of 2-oxo-3-deoxygalactonate kinase from Klebsiella pneumoniae.","Acta Crystallographica Section D: Biological Crystallography","2011","67","678-89","MCSG","3r1x"
"2103","21785987","structure","Eletsky A, Ruyechan WT, Xiao R, Acton TB, Montelione GT, Szyperski T","Solution NMR structure of MED25(391-543) comprising the activator-interacting domain (ACID) of human mediator subunit 25.","Journal of Structural and Functional Genomics","2011","12","159-66","NESG",""
"2281","21785437","structure","Berardi MJ, Shih WM, Harrison SC, Chou JJ.","Mitochondrial uncoupling protein 2 structure determined by NMR molecular fragment searching","Nature","2011","476","109-113","MPSbyNMR","2lck"
"2113","21757692","structure","Vorontsov II, Minasov G, Kiryukhina O, Brunzelle JS, Shuvalova L, Anderson WF","Characterization of the Deoxynucleotide Triphosphate Triphosphohydrolase (dNTPase) Activity of the EF1143 Protein from Enterococcus faecalis and Crystal Structure of the Activator-Substrate Complex.","Journal of Biological Chemistry","2011","286","33158-66","MCSG","2o6i 3irh"
"2393","21746903","function","Shaya D, Kreir M, Robbins RA, Wong S, Hammon J, Brüggemann A, Minor DL","Voltage-gated sodium channel (NaV) protein dissection creates a set of functional pore-only proteins.","Proceedings of the National Academy of Sciences of the United States of America","2011","108","12313-8","CSMP",""
"2455","21719705","function","Deng T, Sieglaff DH, Zhang A, Lyon CJ, Ayers SD, Cvoro A, Gupte AA, Xia X, Baxter JD, Webb P, Hsueh WA","A peroxisome proliferator-activated receptor gamma (PPARgamma)/PPARgamma coactivator 1beta autoregulatory loop in adipocyte mitochondrial function.","Journal of Biological Chemistry","2011","286","30723-31","STEMCELL",""
"2187","21697825","structure","Shimamura T, Shiroishi M, Weyand S, Tsujimoto H, Winter G, Katritch V, Abagyan R, Cherezov V, Liu W, Han GW, Kobayashi T, Stevens RC, Iwata S","Structure of the human histamine H-1 receptor complex with doxepin","Nature","2011","475","65-U70","GPCR","3rze"
"2202","21642972","structure","Zhang H, Constantine R, Vorobiev S, Chen Y, Seetharaman J, Huang YJ, Xiao R, Montelione GT, Gerstner CD, Davis MW, Inana G, Whitby FG, Jorgensen EM, Hill CP, Tong L, Baehr W","UNC119 is required for G protein trafficking in sensory neurons.","Nature neuroscience","2011","14","874-80","NESG",""
"2214","21636891","structure","Conlan AR, Paddock ML, Homer C, Axelrod HL, Cohen AE, Abresch EC, Zuris JA, Nechushtai R, Jennings PA","Mutation of the His ligand in mitoNEET stabilizes the 2Fe-2S cluster despite conformational heterogeneity in the ligand environment.","Acta Crystallographica Section D: Biological Crystallography","2011","67","516-23","JCSG","3lpq"
"2056","21636784","structure","Chu C, Das K, Tyminski JR, Bauman JD, Guan R, Qiu W, Montelione GT, Arnold E, Shatkin AJ","Structure of the guanylyltransferase domain of human mRNA capping enzyme.","Proceedings of the National Academy of Sciences of the United States of America","2011","108","10104-8","NESG",""
"2084","21633970","structure","Filippova EV, Shuvalova L, Minasov G, Kiryukhina O, Zhang Y, Clancy S, Radhakrishnan I, Joachimiak A, Anderson WF","Crystal structure of the novel PaiA N-acetyltransferase from Thermoplasma acidophilum involved in the negative control of sporulation and degradative enzyme production.","Proteins","2011","79","2566-77","MCSG",""
"2082","21633969","note","Filippova EV, Brunzelle JS, Cuff ME, Li H, Joachimiak A, Anderson WF","Crystal structure of the novel PaiB transcriptional regulator from Geobacillus stearothermophilus.","Proteins","2011","79","2578-82","MCSG",""
"2078","21628585","structure","Kim Y, Joachimiak G, Ye Z, Binkowski TA, Zhang R, Gornicki P, Callahan SM, Hess WR, Haselkorn R, Joachimiak A","Structure of transcription factor HetR required for heterocyst differentiation in cyanobacteria.","Proceedings of the National Academy of Sciences of the United States of America","2011","108","10109-14","MCSG","3qoe 3qod"
"2085","21625866","structure","Filippova EV, Chruszcz M, Cymborowski M, Gu J, Savchenko A, Edwards A, Minor W","Crystal structure of a putative transcriptional regulator SCO0520 from Streptomyces coelicolor A3(2) reveals an unusual dimer among TetR family proteins.","Journal of Structural and Functional Genomics","2011","12","149-57","MCSG",""
"2091","21622573","function","Aramini JM, Ma LC, Zhou L, Schauder CM, Hamilton K, Amer BR, Mack TR, Lee HW, Ciccosanti CT, Zhao L, Xiao R, Krug RM, Montelione GT","Dimer Interface of the Effector Domain of Non-structural Protein 1 from Influenza A Virus: AN INTERFACE WITH MULTIPLE FUNCTIONS.","Journal of Biological Chemistry","2011","286","26050-60","NESG",""
"2077","21572039","structure","Kern J, Wilton R, Zhang R, Binkowski TA, Joachimiak A, Schneewind O","Structure of surface layer homology (SLH) domains from Bacillus anthracis surface array protein.","Journal of Biological Chemistry","2011","286","26042-9","MCSG","3pyw"
"2161","21548881","structure","Tchigvintsev A, Singer AU, Flick R, Petit P, Brown G, Evdokimova E, Savchenko A, Yakunin AF","Structure and activity of the Saccharomyces cerevisiae dUTP pyrophosphatase DUT1, an essential housekeeping enzyme.","Biochemical Journal","2011","437","243-53","MCSG","3hhq 3p48 3f4f"
"2443","21544738","structure","Yin C, Aramini JM, Ma LC, Cort JR, Swapna GV, Krug RM, Montelione GT","Backbone and Ile-δ1, Leu, Val methyl 1H, 13C and 15N NMR chemical shift assignments for human interferon-stimulated gene 15 protein.","Biomolecular NMR Assignments","2011","5","215-9","NESG",""
"2070","21538547","structure","Han GW, Ko J, Farr CL, Deller MC, Xu Q, Chiu HJ, Miller MD, Sefcikova J, Somarowthu S, Beuning PJ, Elsliger MA, Deacon AM, Godzik A, Lesley SA, Wilson IA, Ondrechen MJ","Crystal structure of a metal-dependent phosphoesterase (YP_910028.1) from Bifidobacterium adolescentis: Computational prediction and experimental validation of phosphoesterase activity.","Proteins","2011","79","2146-60","JCSG","3e0f 3o0f"
"2087","21520320","structure","Wahab AT, Serrano P, Geralt M, Wüthrich K","NMR structure of the Bordetella bronchiseptica protein NP_888769.1 establishes a new phage-related protein family PF13554.","Protein Science","2011","20","1137-44","JCSG",""
"2073","21505708","structure","Nie Y, Xiao R, Xu Y, Montelione GT","Novel anti-Prelog stereospecific carbonyl reductases from Candida parapsilosis for asymmetric reduction of prochiral ketones.","Organic & Biomolecular Chemistry","2011","9","4070-8","NESG",""
"2092","21478016","structure","You L, Cho EJ, Leavitt J, Ma LC, Montelione GT, Anslyn EV, Krug RM, Ellington A, Robertus JD","Synthesis and evaluation of quinoxaline derivatives as potential influenza NS1A protein inhibitors.","Accounts of Chemical Research","2011","21","3007-11","NESG",""
"2079","21476004","structure","Osipiuk J, Xu X, Cui H, Savchenko A, Edwards A, Joachimiak A","Crystal structure of secretory protein Hcp3 from Pseudomonas aeruginosa.","Journal of Structural and Functional Genomics","2011","12","21-6","MCSG","3he1"
"2410","21474759","function","Bhabha G, Lee J, Ekiert DC, Gam J, Wilson IA, Dyson HJ, Benkovic SJ, Wright PE","A dynamic knockout reveals that conformational fluctuations influence the chemical step of enzyme catalysis.","Science","2011","332","234-8","JCSG",""
"2049","21471968","structure","Cao Y, Jin X, Levin EJ, Huang H, Zong Y, Quick M, Weng J, Pan Y, Love J, Punta M, Rost B, Hendrickson WA, Javitch JA, Rajashankar KR, Zhou M","Crystal structure of a phosphorylation-coupled saccharide transporter.","Nature","2011","473","50-4","NYCOMPS","3qnq"
"2059","21464369","structure","Paddock C, Lytle BL, Peterson FC, Holyst T, Newman PJ, Volkman BF, Newman DK","Residues within a lipid-associated segment of the PECAM-1 cytoplasmic domain are susceptible to inducible, sequential phosphorylation.","Blood","2011","117","6012-23","CESG","2ky5"
"2212","  21456411","structure","Renzi F, Zhang X, Rice WJ, Torres-Arancivia C, Gomez-Llorente Y, Diaz R, Ahn K, Yu C, Li YM, Sisodia SS, Ubarretxena-Belandia I.","Structure of gamma-secretase  and its trimeric pre-activation intermediate by single-particle electron microscopy.","Journal of Biological Chemistry","2011","286","21440-21449","TEMIMPS",""
"2029","21445265","structure","Das D, Hervé M, Feuerhelm J, Farr CL, Chiu HJ, Elsliger MA, Knuth MW, Klock HE, Miller MD, Godzik A, Lesley SA, Deacon AM, Mengin-Lecreulx D, Wilson IA","Structure and function of the first full-length murein Peptide ligase (mpl) cell wall recycling protein.","PLoS ONE","2011","6","e17624","JCSG","3hn7"
"2060","21436043","structure","Gonzales-Vigil E, Bianchetti CM, Phillips GN, Howe GA","Adaptive evolution of threonine deaminase in plant defense against insect herbivores.","Proceedings of the National Academy of Sciences of the United States of America","2011","108","5897-902","CESG","3iau"
"2057","21397192","structure","Liao JC, Lam R, Brazda V, Duan S, Ravichandran M, Ma J, Xiao T, Tempel W, Zuo X, Wang YX, Chirgadze NY, Arrowsmith CH","Interferon-inducible protein 16: insight into the interaction with tumor suppressor p53.","Structure","2011","19","418-29","NESG",""
"2175","21393508","structure","Xu F, Wu H, Katritch V, Han GW, Jacobson KA, Gao ZG, Cherezov V, Stevens RC","Structure of an agonist-bound human A2A adenosine receptor.","Science","2011","332","322-7","GPCR","3qak"
"2157","21390267","structure","Deshpande CN, Harrop SJ, Boucher Y, Hassan KA, Di Leo R, Xu X, Cui H, Savchenko A, Chang C, Labbate M, Paulsen IT, Stokes HW, Curmi PM, Mabbutt BC","Crystal structure of an integron gene cassette-associated protein from Vibrio cholerae identifies a cationic drug-binding module.","PLoS ONE","2011","6","e16934","MCSG","3gk6"
"2027","21387413","note","Bagaria A, Kumaran D, Burley SK, Swaminathan S","Structural basis for a ribofuranosyl binding protein: Insights into the furanose specific transport.","Proteins","2011","79","1352-7","NYSGXRC","3ksm"
"2030","21387410","structure","Bianchetti CM, Bingman CA, Phillips GN","Structure of the C-terminal heme-binding domain of THAP domain containing protein 4 from Homo sapiens.","Proteins","2011","79","1337-41","CESG","3ia8"
"2031","21387409","structure","Sethe Burgie E, Bingman CA, Makino S, Wesenberg GE, Pan X, Fox BG, Phillips GN","Structural architecture of Galdieria sulphuraria DCN1L.","Proteins","2011","79","1329-36","CESG","3kev"
"2147","21383057","function","Wang L, Rubinstein R, Lines JL, Wasiuk A, Ahonen C, Guo Y, Lu LF, Gondek D, Wang Y, Fava RA, Fiser A, Almo S, Noelle RJ","VISTA, a novel mouse Ig superfamily ligand that negatively regulates T cell responses.","Journal of Experimental Medicine","2011","208","577-92","IFN+NYSGRC",""
"2032","21358050","structure","Chang A, Singh S, Bingman CA, Thorson JS, Phillips GN","Structural characterization of CalO1: a putative orsellinic acid methyltransferase in the calicheamicin-biosynthetic pathway.","Acta Crystallographica Section D: Biological Crystallography","2011","67","197-203","CESG","3lst"
"2022","21317882","structure","Cao Y, Jin X, Huang H, Derebe MG, Levin EJ, Kabaleeswaran V, Pan Y, Punta M, Love J, Weng J, Quick M, Ye S, Kloss B, Bruni R, Martinez-Hackert E, Hendrickson WA, Rost B, Javitch JA, Rajashankar KR, Jiang Y, Zhou M","Crystal structure of a potassium ion transporter, TrkH.","Nature","2011","471","336–340","NYCOMPS","3pjz"
"2033","21317292","structure","Moretti R, Chang A, Peltier-Pain P, Bingman CA, Phillips GN, Thorson JS","Expanding the nucleotide and sugar-1-phosphate promiscuity of nucleotidyltransferase RmlA via directed evolution.","Journal of Biological Chemistry","2011","286","13235-43","CESG","3pkp 3pkq"
"2028","21275375","function","Kamat SS, Fan H, Sauder JM, Burley SK, Shoichet BK, Sali A, Raushel FM","Enzymatic deamination of the epigenetic base N-6-methyladenine.","Journal of the American Chemical Society","2011","133","2080-3","NYSGXRC",""
"2021","21247902","structure","Hwang J, Kim Y, Kang HB, Jaroszewski L, Deacon AM, Lee H, Choi WC, Kim KJ, Kim CH, Kang BS, Lee JO, Oh TK, Kim JW, Wilson IA, Kim MH","Crystal Structure of the Human N-Myc Downstream-regulated Gene 2 Protein Provides Insight into Its Role as a Tumor Suppressor.","Journal of Biological Chemistry","2011","286","12450-60","JCSG","2xmq 2xmr 2xms 2qmq"
"2089","21247091","structure","Kamat SS, Bagaria A, Kumaran D, Holmes-Hampton GP, Fan H, Sali A, Sauder JM, Burley SK, Lindahl PA, Swaminathan S, Raushel FM","Catalytic mechanism and three-dimensional structure of adenine deaminase.","Biochemistry","2011","50","1917-27","EFI+NYSGXRC",""
"2050","21235239","structure","Ramelot TA, Smola MJ, Lee HW, Ciccosanti C, Hamilton K, Acton TB, Xiao R, Everett JK, Prestegard JH, Montelione GT, Kennedy MA","Solution structure of 4'-phosphopantetheine - GmACP3 from Geobacter metallireducens: a specialized acyl carrier protein with atypical structural features and a putative role in lipopolysaccharide biosynthesis.","Biochemistry","2011","50","1442-53","NESG",""
"2020","21185308","structure","Nocek B, Stein AJ, Jedrzejczak R, Cuff ME, Li H, Volkart L, Joachimiak A","Structural Studies of ROK Fructokinase YdhR from Bacillus subtilis: Insights into Substrate Binding and Fructose Specificity.","Journal of Molecular Biology","2011","406","325-42","MCSG","1xc3 3ohr 3lm9"
"2090","21185305","structure","Zhang Z, Zhou R, Sauder JM, Tonge PJ, Burley SK, Swaminathan S","Structural and functional studies of fatty acyl adenylate ligases from E. coli and L. pneumophila.","Journal of Molecular Biology","2011","406","313-24","NYSGXRC",""
"2054","21154411","structure","Barb AW, Cort JR, Seetharaman J, Lew S, Lee HW, Acton T, Xiao R, Kennedy MA, Tong L, Montelione GT, Prestegard JH","Structures of domains I and IV from YbbR are representative of a widely distributed protein family.","Protein Science","2011","20","396-405","NESG",""
"1997","21153711","structure","Mani R, Vorobiev S, Swapna GV, Neely H, Janjua H, Ciccosanti C, Xiao R, Acton TB, Everett JK, Hunt J, Montelione GT","Solution NMR and X-ray crystal structures of membrane-associated Lipoprotein-17 domain reveal a novel fold.","Journal of Structural and Functional Genomics","2011","12","27-32","NESG",""
"2076","21134380","structure","Crepin T, Peterson F, Haertlein M, Jensen D, Wang C, Cusack S, Kron M","A hybrid structural model of the complete Brugia malayi cytoplasmic asparaginyl-tRNA synthetase.","Journal of Molecular Biology","2011","405","1056-69","CESG","2kqr"
"1912","21058299","structure","Yang Y, Ramelot TA, Cort JR, Wang D, Ciccosanti C, Hamilton K, Nair R, Rost B, Acton TB, Xiao R, Everett JK, Montelione GT, Kennedy MA","Solution NMR structure of photosystem II reaction center protein Psb28 from Synechocystis sp. Strain PCC 6803.","Proteins","2011","79","340-4","NESG",""
"1925","20979070","note","Aramini JM, Rossi P, Cort JR, Ma LC, Xiao R, Acton TB, Montelione GT","Solution NMR structure of the plasmid-encoded fimbriae regulatory protein PefI from Salmonella enterica serovar Typhimurium.","Proteins","2011","79","335-9","NESG",""
"1959","21139197","structure","Schauder C, Ma LC, Krug RM, Montelione GT, Guan R","Structure of the iSH2 domain of human phosphatidylinositol 3-kinase p85β subunit reveals conformational plasticity in the interhelical turn region.","Acta Crystallographica Section F: Structural Biology and Crystallization Communications","2010","66","1567-71","NESG",""
"1960","21139196","structure","Forouhar F, Lew S, Seetharaman J, Xiao R, Acton TB, Montelione GT, Tong L","Structures of bacterial biosynthetic arginine decarboxylases.","Acta Crystallographica Section F: Structural Biology and Crystallization Communications","2010","66","1562-6","NESG",""
"2015","21097933","structure","Chien EY, Liu W, Zhao Q, Katritch V, Han GW, Hanson MA, Shi L, Newman AH, Javitch JA, Cherezov V, Stevens RC","Structure of the human dopamine D3 receptor in complex with a D2/D3 selective antagonist.","Science","2010","330","1091-5","ATCG3D+GPCR","3pbl"
"2427","21090748","function","Pielak RM, Chou JJ","Kinetic analysis of the M2 proton conduction of the influenza virus.","Journal of the American Chemical Society","2010","132","17695-7","MPSbyNMR",""
"2004","21070950","structure","Wisedchaisri G, Dranow DM, Lie TJ, Bonanno JB, Patskovsky Y, Ozyurt SA, Sauder JM, Almo SC, Wasserman SR, Burley SK, Leigh JA, Gonen T","Structural underpinnings of nitrogen regulation by the prototypical nitrogen-responsive transcriptional factor NrpR.","Structure","2010","18","1512-21","NYSGXRC","3nek"
"1998","21045552","structure","Chaulk S, Lu J, Tan K, Arthur DC, Edwards RA, Frost LS, Joachimiak A, Glover JN","N. meningitidis 1681 is a member of the FinO family of RNA chaperones.","RNA Biology","2010","7","112-119","MCSG","3mw6"
"1961","20981093","structure","Chen YH, Hu L, Punta M, Bruni R, Hillerich B, Kloss B, Rost B, Love J, Siegelbaum SA, Hendrickson WA","Homologue structure of the SLAC1 anion channel for closing stomata in leaves.","Nature","2010","467","1074-80","NYCOMPS","3m71 3m72 3m73 3m74 3m75 3m76 3m77 3m78 3m7b 3m7c 3m7e 3m7l"
"2067","20951571","structure","Atta M, Mulliez E, Arragain S, Forouhar F, Hunt JF, Fontecave M","S-Adenosylmethionine-dependent radical-based modification of biological macromolecules.","Current Opinion in Structural Biology","2010","20","684-92","NESG",""
"1996","20944236","structure","Serrano P, Pedrini B, Geralt M, Jaudzems K, Mohanty B, Horst R, Herrmann T, Elsliger MA, Wilson IA, Wüthrich K","Comparison of NMR and crystal structures highlights conformational isomerism in protein active sites.","Acta Crystallographica Section F: Structural Biology and Crystallization Communications","2010","66","1393-405","JCSG","2ka5 2kl2"
"1995","20944235","structure","Mohanty B, Serrano P, Pedrini B, Jaudzems K, Geralt M, Horst R, Herrmann T, Elsliger MA, Wilson IA, Wüthrich K","Comparison of NMR and crystal structures for the proteins TM1112 and TM1367.","Acta Crystallographica Section F: Structural Biology and Crystallization Communications","2010","66","1381-92","JCSG","2k9z 2ka0"
"1994","20944234","structure","Jaudzems K, Geralt M, Serrano P, Mohanty B, Horst R, Pedrini B, Elsliger MA, Wilson IA, Wüthrich K","NMR structure of the protein NP_247299.1: comparison with the crystal structure.","Acta Crystallographica Section F: Structural Biology and Crystallization Communications","2010","66","1367-80","JCSG","2kla"
"1992","20944232","structure","Xu Q, Abdubek P, Astakhova T, Axelrod HL, Bakolitsa C, Cai X, Carlton D, Chen C, Chiu HJ, Chiu M, Clayton T, Das D, Deller MC, Duan L, Ellrott K, Farr CL, Feuerhelm J, Grant JC, Grzechnik A, Han GW, Jaroszewski L, Jin KK, Klock HE, Knuth MW, Kozbial P, Krishna SS, Kumar A, Lam WW, Marciano D, Miller MD, Morse AT, Nigoghossian E, Nopakun A, Okach L, Puckett C, Reyes R, Tien HJ, Trame CB, van den Bedem H, Weekes D, Wooten T, Yeh A, Hodgson KO, Wooley J, Elsliger MA, Deacon AM, Godzik A, Lesley SA, Wilson IA","Structure of the γ-D-glutamyl-L-diamino acid endopeptidase YkfC from Bacillus cereus in complex with L-Ala-γ-D-Glu: insights into substrate recognition by NlpC/P60 cysteine peptidases.","Acta Crystallographica Section F: Structural Biology and Crystallization Communications","2010","66","1354-64","JCSG","3h41"
"1991","20944231","structure","Axelrod HL, Kozbial P, McMullan D, Krishna SS, Miller MD, Abdubek P, Acosta C, Astakhova T, Carlton D, Caruthers J, Chiu HJ, Clayton T, Deller MC, Duan L, Elias Y, Feuerhelm J, Grzechnik SK, Grant JC, Han GW, Jaroszewski L, Jin KK, Klock HE, Knuth MW, Kumar A, Marciano D, Morse AT, Murphy KD, Nigoghossian E, Okach L, Oommachen S, Paulsen J, Reyes R, Rife CL, Tien HJ, Trout CV, van den Bedem H, Weekes D, White A, Xu Q, Zubieta C, Hodgson KO, Wooley J, Elsliger MA, Deacon AM, Godzik A, Lesley SA, Wilson IA","Conformational changes associated with the binding of zinc acetate at the putative active site of XcTcmJ, a cupin from Xanthomonas campestris pv. campestris.","Acta Crystallographica Section F: Structural Biology and Crystallization Communications","2010","66","1347-53","JCSG","3h50"
"1990","20944230","structure","Axelrod HL, Das D, Abdubek P, Astakhova T, Bakolitsa C, Carlton D, Chen C, Chiu HJ, Clayton T, Deller MC, Duan L, Ellrott K, Farr CL, Feuerhelm J, Grant JC, Grzechnik A, Han GW, Jaroszewski L, Jin KK, Klock HE, Knuth MW, Kozbial P, Krishna SS, Kumar A, Lam WW, Marciano D, McMullan D, Miller MD, Morse AT, Nigoghossian E, Nopakun A, Okach L, Puckett C, Reyes R, Sefcovic N, Tien HJ, Trame CB, van den Bedem H, Weekes D, Wooten T, Xu Q, Hodgson KO, Wooley J, Elsliger MA, Deacon AM, Godzik A, Lesley SA, Wilson IA","Structures of three members of Pfam PF02663 (FmdE) implicated in microbial methanogenesis reveal a conserved α+β core domain and an auxiliary C-terminal treble-clef zinc finger.","Acta Crystallographica Section F: Structural Biology and Crystallization Communications","2010","66","1335-46","JCSG","2glz 2gvi 3d00"
"1989","20944229","structure","Han GW, Yang XL, McMullan D, Chong YE, Krishna SS, Rife CL, Weekes D, Brittain SM, Abdubek P, Ambing E, Astakhova T, Axelrod HL, Carlton D, Caruthers J, Chiu HJ, Clayton T, Duan L, Feuerhelm J, Grant JC, Grzechnik SK, Jaroszewski L, Jin KK, Klock HE, Knuth MW, Kumar A, Marciano D, Miller MD, Morse AT, Nigoghossian E, Okach L, Paulsen J, Reyes R, van den Bedem H, White A, Wolf G, Xu Q, Hodgson KO, Wooley J, Deacon AM, Godzik A, Lesley SA, Elsliger MA, Schimmel P, Wilson IA","Structure of a tryptophanyl-tRNA synthetase containing an iron-sulfur cluster.","Acta Crystallographica Section F: Structural Biology and Crystallization Communications","2010","66","1326-34","JCSG","2g36"
"1988","20944228","structure","Chiu HJ, Abdubek P, Astakhova T, Axelrod HL, Carlton D, Clayton T, Das D, Deller MC, Duan L, Feuerhelm J, Grant JC, Grzechnik A, Han GW, Jaroszewski L, Jin KK, Klock HE, Knuth MW, Kozbial P, Krishna SS, Kumar A, Marciano D, McMullan D, Miller MD, Morse AT, Nigoghossian E, Okach L, Reyes R, Tien HJ, Trame CB, van den Bedem H, Weekes D, Xu Q, Hodgson KO, Wooley J, Elsliger MA, Deacon AM, Godzik A, Lesley SA, Wilson IA","The structure of Haemophilus influenzaeprephenate dehydrogenase suggests unique features of bifunctional TyrA enzymes.","Acta Crystallographica Section F: Structural Biology and Crystallization Communications","2010","66","1317-25","JCSG","2pv7"
"1986","20944226","structure","Speers AE, Cravatt BF","Ligands in crystal structures that aid in functional characterization.","Acta Crystallographica Section F: Structural Biology and Crystallization Communications","2010","66","1306-8","JCSG",""
"1985","20944225","structure","Xu Q, Abdubek P, Astakhova T, Axelrod HL, Bakolitsa C, Cai X, Carlton D, Chen C, Chiu HJ, Clayton T, Das D, Deller MC, Duan L, Ellrott K, Farr CL, Feuerhelm J, Grant JC, Grzechnik A, Han GW, Jaroszewski L, Jin KK, Klock HE, Knuth MW, Kozbial P, Krishna SS, Kumar A, Lam WW, Marciano D, Miller MD, Morse AT, Nigoghossian E, Nopakun A, Okach L, Puckett C, Reyes R, Tien HJ, Trame CB, van den Bedem H, Weekes D, Wooten T, Yeh A, Zhou J, Hodgson KO, Wooley J, Elsliger MA, Deacon AM, Godzik A, Lesley SA, Wilson IA","Structure of a membrane-attack complex/perforin (MACPF) family protein from the human gut symbiont Bacteroides thetaiotaomicron.","Acta Crystallographica Section F: Structural Biology and Crystallization Communications","2010","66","1297-305","JCSG","3kk7"
"1984","20944224","structure","Yeh AP, Abdubek P, Astakhova T, Axelrod HL, Bakolitsa C, Cai X, Carlton D, Chen C, Chiu HJ, Chiu M, Clayton T, Das D, Deller MC, Duan L, Ellrott K, Farr CL, Feuerhelm J, Grant JC, Grzechnik A, Han GW, Jaroszewski L, Jin KK, Klock HE, Knuth MW, Kozbial P, Krishna SS, Kumar A, Lam WW, Marciano D, McMullan D, Miller MD, Morse AT, Nigoghossian E, Nopakun A, Okach L, Puckett C, Reyes R, Tien HJ, Trame CB, van den Bedem H, Weekes D, Wooten T, Xu Q, Hodgson KO, Wooley J, Elsliger MA, Deacon AM, Godzik A, Lesley SA, Wilson IA","Structure of Bacteroides thetaiotaomicron BT2081 at 2.05 Å resolution: the first structural representative of a new protein family that may play a role in carbohydrate metabolism.","Acta Crystallographica Section F: Structural Biology and Crystallization Communications","2010","66","1287-96","JCSG","3hbz"
"1983","20944223","structure","Xu Q, Abdubek P, Astakhova T, Axelrod HL, Bakolitsa C, Cai X, Carlton D, Chen C, Chiu HJ, Chiu M, Clayton T, Das D, Deller MC, Duan L, Ellrott K, Farr CL, Feuerhelm J, Grant JC, Grzechnik A, Han GW, Jaroszewski L, Jin KK, Klock HE, Knuth MW, Kozbial P, Krishna SS, Kumar A, Marciano D, McMullan D, Miller MD, Morse AT, Nigoghossian E, Nopakun A, Okach L, Puckett C, Reyes R, Sefcovic N, Tien HJ, Trame CB, van den Bedem H, Weekes D, Wooten T, Yeh A, Zhou J, Hodgson KO, Wooley J, Elsliger MA, Deacon AM, Godzik A, Lesley SA, Wilson IA","A conserved fold for fimbrial components revealed by the crystal structure of a putative fimbrial assembly protein (BT1062) from Bacteroides thetaiotaomicron at 2.2 Å resolution.","Acta Crystallographica Section F: Structural Biology and Crystallization Communications","2010","66","1281-6","JCSG","3gf8"
"1982","20944222","structure","Bakolitsa C, Xu Q, Rife CL, Abdubek P, Astakhova T, Axelrod HL, Carlton D, Chen C, Chiu HJ, Clayton T, Das D, Deller MC, Duan L, Ellrott K, Farr CL, Feuerhelm J, Grant JC, Grzechnik A, Han GW, Jaroszewski L, Jin KK, Klock HE, Knuth MW, Kozbial P, Krishna SS, Kumar A, Lam WW, Marciano D, McMullan D, Miller MD, Morse AT, Nigoghossian E, Nopakun A, Okach L, Puckett C, Reyes R, Tien HJ, Trame CB, van den Bedem H, Weekes D, Hodgson KO, Wooley J, Elsliger MA, Deacon AM, Godzik A, Lesley SA, Wilson IA","Structure of BT_3984, a member of the SusD/RagB family of nutrient-binding molecules.","Acta Crystallographica Section F: Structural Biology and Crystallization Communications","2010","66","1274-80","JCSG","3cgh"
"1981","20944221","structure","Das D, Finn RD, Carlton D, Miller MD, Abdubek P, Astakhova T, Axelrod HL, Bakolitsa C, Chen C, Chiu HJ, Chiu M, Clayton T, Deller MC, Duan L, Ellrott K, Ernst D, Farr CL, Feuerhelm J, Grant JC, Grzechnik A, Han GW, Jaroszewski L, Jin KK, Klock HE, Knuth MW, Kozbial P, Krishna SS, Kumar A, Marciano D, McMullan D, Morse AT, Nigoghossian E, Nopakun A, Okach L, Puckett C, Reyes R, Rife CL, Sefcovic N, Tien HJ, Trame CB, van den Bedem H, Weekes D, Wooten T, Xu Q, Hodgson KO, Wooley J, Elsliger MA, Deacon AM, Godzik A, Lesley SA, Wilson IA","The structure of BVU2987 from Bacteroides vulgatus reveals a superfamily of bacterial periplasmic proteins with possible inhibitory function.","Acta Crystallographica Section F: Structural Biology and Crystallization Communications","2010","66","1265-73","JCSG","3due"
"1979","20944219","structure","Das D, Kozbial P, Han GW, Carlton D, Jaroszewski L, Abdubek P, Astakhova T, Axelrod HL, Bakolitsa C, Chen C, Chiu HJ, Chiu M, Clayton T, Deller MC, Duan L, Ellrott K, Elsliger MA, Ernst D, Farr CL, Feuerhelm J, Grzechnik A, Grant JC, Jin KK, Johnson HA, Klock HE, Knuth MW, Krishna SS, Kumar A, Marciano D, McMullan D, Miller MD, Morse AT, Nigoghossian E, Nopakun A, Okach L, Oommachen S, Paulsen J, Puckett C, Reyes R, Rife CL, Sefcovic N, Tien HJ, Trame CB, van den Bedem H, Weekes D, Wooten T, Xu Q, Hodgson KO, Wooley J, Deacon AM, Godzik A, Lesley SA, Wilson IA","The structure of KPN03535 (gi|152972051), a novel putative lipoprotein from Klebsiella pneumoniae, reveals an OB-fold.","Acta Crystallographica Section F: Structural Biology and Crystallization Communications","2010","66","1254-60","JCSG","3f1z"
"1978","20944218","structure","Kumar A, Lomize A, Jin KK, Carlton D, Miller MD, Jaroszewski L, Abdubek P, Astakhova T, Axelrod HL, Chiu HJ, Clayton T, Das D, Deller MC, Duan L, Feuerhelm J, Grant JC, Grzechnik A, Han GW, Klock HE, Knuth MW, Kozbial P, Krishna SS, Marciano D, McMullan D, Morse AT, Nigoghossian E, Okach L, Reyes R, Rife CL, Sefcovic N, Tien HJ, Trame CB, van den Bedem H, Weekes D, Xu Q, Hodgson KO, Wooley J, Elsliger MA, Deacon AM, Godzik A, Lesley SA, Wilson IA","Open and closed conformations of two SpoIIAA-like proteins (YP_749275.1 and YP_001095227.1) provide insights into membrane association and ligand binding.","Acta Crystallographica Section F: Structural Biology and Crystallization Communications","2010","66","1245-53","JCSG","2ook 2q3l"
"1977","20944217","structure","Han GW, Elsliger MA, Yeates TO, Xu Q, Murzin AG, Krishna SS, Jaroszewski L, Abdubek P, Astakhova T, Axelrod HL, Carlton D, Chen C, Chiu HJ, Clayton T, Das D, Deller MC, Duan L, Ernst D, Feuerhelm J, Grant JC, Grzechnik A, Jin KK, Johnson HA, Klock HE, Knuth MW, Kozbial P, Kumar A, Lam WW, Marciano D, McMullan D, Miller MD, Morse AT, Nigoghossian E, Okach L, Reyes R, Rife CL, Sefcovic N, Tien HJ, Trame CB, van den Bedem H, Weekes D, Hodgson KO, Wooley J, Deacon AM, Godzik A, Lesley SA, Wilson IA","Structure of a putative NTP pyrophosphohydrolase: YP_001813558.1 from Exiguobacterium sibiricum 255-15.","Acta Crystallographica Section F: Structural Biology and Crystallization Communications","2010","66","1237-44","JCSG","3nl9"
"1976","20944216","structure","Xu Q, McMullan D, Jaroszewski L, Krishna SS, Elsliger MA, Yeh AP, Abdubek P, Astakhova T, Axelrod HL, Carlton D, Chiu HJ, Clayton T, Duan L, Feuerhelm J, Grant J, Han GW, Jin KK, Klock HE, Knuth MW, Miller MD, Morse AT, Nigoghossian E, Okach L, Oommachen S, Paulsen J, Reyes R, Rife CL, van den Bedem H, Hodgson KO, Wooley J, Deacon AM, Godzik A, Lesley SA, Wilson IA","Structure of an essential bacterial protein YeaZ (TM0874) from Thermotoga maritima at 2.5 Å resolution","Acta Crystallographica Section F: Structural Biology and Crystallization Communications","2010","66","1230-6","JCSG","2a6a"
"1974","20944214","structure","Han GW, Bakolitsa C, Miller MD, Kumar A, Carlton D, Najmanovich RJ, Abdubek P, Astakhova T, Axelrod HL, Chen C, Chiu HJ, Clayton T, Das D, Deller MC, Duan L, Ernst D, Feuerhelm J, Grant JC, Grzechnik A, Jaroszewski L, Jin KK, Johnson HA, Klock HE, Knuth MW, Kozbial P, Krishna SS, Marciano D, McMullan D, Morse AT, Nigoghossian E, Okach L, Reyes R, Rife CL, Sefcovic N, Tien HJ, Trame CB, van den Bedem H, Weekes D, Xu Q, Hodgson KO, Wooley J, Elsliger MA, Deacon AM, Godzik A, Lesley SA, Wilson IA","Structures of the first representatives of Pfam family PF06938 (DUF1285) reveal a new fold with repeated structural motifs and possible involvement in signal transduction.","Acta Crystallographica Section F: Structural Biology and Crystallization Communications","2010","66","1218-25","JCSG","2re3 2ra9"
"1973","20944213","structure","Bakolitsa C, Kumar A, McMullan D, Krishna SS, Miller MD, Carlton D, Najmanovich R, Abdubek P, Astakhova T, Chiu HJ, Clayton T, Deller MC, Duan L, Elias Y, Feuerhelm J, Grant JC, Grzechnik SK, Han GW, Jaroszewski L, Jin KK, Klock HE, Knuth MW, Kozbial P, Marciano D, Morse AT, Nigoghossian E, Okach L, Oommachen S, Paulsen J, Reyes R, Rife CL, Trout CV, van den Bedem H, Weekes D, White A, Xu Q, Hodgson KO, Wooley J, Elsliger MA, Deacon AM, Godzik A, Lesley SA, Wilson IA","The structure of the first representative of Pfam family PF06475 reveals a new fold with possible involvement in glycolipid metabolism.","Acta Crystallographica Section F: Structural Biology and Crystallization Communications","2010","66","1211-7","JCSG","2h1t"
"1972","20944212","structure","Bakolitsa C, Kumar A, Carlton D, Miller MD, Krishna SS, Abdubek P, Astakhova T, Axelrod HL, Chiu HJ, Clayton T, Deller MC, Duan L, Elsliger MA, Feuerhelm J, Grzechnik SK, Grant JC, Han GW, Jaroszewski L, Jin KK, Klock HE, Knuth MW, Kozbial P, Marciano D, McMullan D, Morse AT, Nigoghossian E, Okach L, Oommachen S, Paulsen J, Reyes R, Rife CL, Tien HJ, Trout CV, van den Bedem H, Weekes D, Xu Q, Hodgson KO, Wooley J, Deacon AM, Godzik A, Lesley SA, Wilson IA","Structure of LP2179, the first representative of Pfam family PF08866, suggests a new fold with a role in amino-acid metabolism.","Acta Crystallographica Section F: Structural Biology and Crystallization Communications","2010","66","1205-10","JCSG","2iay"
"1971","20944211","structure","Bakolitsa C, Bateman A, Jin KK, McMullan D, Krishna SS, Miller MD, Abdubek P, Acosta C, Astakhova T, Axelrod HL, Burra P, Carlton D, Chiu HJ, Clayton T, Das D, Deller MC, Duan L, Elias Y, Feuerhelm J, Grant JC, Grzechnik A, Grzechnik SK, Han GW, Jaroszewski L, Klock HE, Knuth MW, Kozbial P, Kumar A, Marciano D, Morse AT, Murphy KD, Nigoghossian E, Okach L, Oommachen S, Paulsen J, Reyes R, Rife CL, Sefcovic N, Tien H, Trame CB, Trout CV, van den Bedem H, Weekes D, White A, Xu Q, Hodgson KO, Wooley J, Elsliger MA, Deacon AM, Godzik A, Lesley S, Wilson IA","The structure of Jann_2411 (DUF1470) from Jannaschia sp. at 1.45 Å resolution reveals a new fold (the ABATE domain) and suggests its possible role as a transcription regulator","Acta Crystallographica Section F: Structural Biology and Crystallization Communications","2010","66","1198-204","JCSG","3h0n"
"1969","20944209","structure","Bakolitsa C, Kumar A, Jin KK, McMullan D, Krishna SS, Miller MD, Abdubek P, Acosta C, Astakhova T, Axelrod HL, Burra P, Carlton D, Chen C, Chiu HJ, Clayton T, Das D, Deller MC, Duan L, Elias Y, Ellrott K, Ernst D, Farr CL, Feuerhelm J, Grant JC, Grzechnik A, Grzechnik SK, Han GW, Jaroszewski L, Johnson HA, Klock HE, Knuth MW, Kozbial P, Marciano D, Morse AT, Murphy KD, Nigoghossian E, Nopakun A, Okach L, Paulsen J, Puckett C, Reyes R, Rife CL, Sefcovic N, Tien HJ, Trame CB, Trout CV, van den Bedem H, Weekes D, White A, Xu Q, Hodgson KO, Wooley J, Elsliger MA, Deacon AM, Godzik A, Lesley SA, Wilson IA","Structures of the first representatives of Pfam family PF06684 (DUF1185) reveal a novel variant of the Bacillus chorismate mutase fold and suggest a role in amino-acid metabolism.","Acta Crystallographica Section F: Structural Biology and Crystallization Communications","2010","66","1182-9","JCSG","3byq 2qtp"
"1968","20944208","structure","Das D, Grishin NV, Kumar A, Carlton D, Bakolitsa C, Miller MD, Abdubek P, Astakhova T, Axelrod HL, Burra P, Chen C, Chiu HJ, Chiu M, Clayton T, Deller MC, Duan L, Ellrott K, Ernst D, Farr CL, Feuerhelm J, Grzechnik A, Grzechnik SK, Grant JC, Han GW, Jaroszewski L, Jin KK, Johnson HA, Klock HE, Knuth MW, Kozbial P, Krishna SS, Marciano D, McMullan D, Morse AT, Nigoghossian E, Nopakun A, Okach L, Oommachen S, Paulsen J, Puckett C, Reyes R, Rife CL, Sefcovic N, Tien HJ, Trame CB, van den Bedem H, Weekes D, Wooten T, Xu Q, Hodgson KO, Wooley J, Elsliger MA, Deacon AM, Godzik A, Lesley SA, Wilson IA","The structure of the first representative of Pfam family PF09836 reveals a two-domain organization and suggests involvement in transcriptional regulation.","Acta Crystallographica Section F: Structural Biology and Crystallization Communications","2010","66","1174-81","JCSG","3dee"
"1967","20944207","structure","Miller MD, Aravind L, Bakolitsa C, Rife CL, Carlton D, Abdubek P, Astakhova T, Axelrod HL, Chiu HJ, Clayton T, Deller MC, Duan L, Feuerhelm J, Grant JC, Han GW, Jaroszewski L, Jin KK, Klock HE, Knuth MW, Kozbial P, Krishna SS, Kumar A, Marciano D, McMullan D, Morse AT, Nigoghossian E, Okach L, Reyes R, van den Bedem H, Weekes D, Xu Q, Hodgson KO, Wooley J, Elsliger MA, Deacon AM, Godzik A, Lesley SA, Wilson IA","Structure of the first representative of Pfam family PF04016 (DUF364) reveals enolase and Rossmann-like folds that combine to form a unique active site with a possible role in heavy-metal chelation.","Acta Crystallographica Section F: Structural Biology and Crystallization Communications","2010","66","1167-73","JCSG","3l5o"
"1966","20944206","structure","Krishna SS, Aravind L, Bakolitsa C, Caruthers J, Carlton D, Miller MD, Abdubek P, Astakhova T, Axelrod HL, Chiu HJ, Clayton T, Deller MC, Duan L, Feuerhelm J, Grant JC, Han GW, Jaroszewski L, Jin KK, Klock HE, Knuth MW, Kumar A, Marciano D, McMullan D, Morse AT, Nigoghossian E, Okach L, Reyes R, Rife CL, van den Bedem H, Weekes D, Xu Q, Hodgson KO, Wooley J, Elsliger MA, Deacon AM, Godzik A, Lesley SA, Wilson IA","The structure of SSO2064, the first representative of Pfam family PF01796, reveals a novel two-domain zinc-ribbon OB-fold architecture with a potential acyl-CoA-binding role.","Acta Crystallographica Section F: Structural Biology and Crystallization Communications","2010","66","1160-6","JCSG","3irb"
"1965","20944205","structure","Chiu HJ, Bakolitsa C, Skerra A, Lomize A, Carlton D, Miller MD, Krishna SS, Abdubek P, Astakhova T, Axelrod HL, Clayton T, Deller MC, Duan L, Feuerhelm J, Grant JC, Grzechnik SK, Han GW, Jaroszewski L, Jin KK, Klock HE, Knuth MW, Kozbial P, Kumar A, Marciano D, McMullan D, Morse AT, Nigoghossian E, Okach L, Paulsen J, Reyes R, Rife CL, van den Bedem H, Weekes D, Xu Q, Hodgson KO, Wooley J, Elsliger MA, Deacon AM, Godzik A, Lesley SA, Wilson IA","Structure of the first representative of Pfam family PF09410 (DUF2006) reveals a structural signature of the calycin superfamily that suggests a role in lipid metabolism.","Acta Crystallographica Section F: Structural Biology and Crystallization Communications","2010","66","1153-9","JCSG","2ich"
"2005","20943661","structure","Kikani CK, Antonysamy SA, Bonanno JB, Romero R, Zhang FF, Russell M, Gheyi T, Iizuka M, Emtage S, Sauder JM, Turk BE, Burley SK, Rutter J","Structural bases of PAS domain-regulated kinase (PASK) activation in the absence of activation loop phosphorylation.","Journal of Biological Chemistry","2010","285","41034-43","NYSGXRC","3dls"
"2011","20929726","structure","Wu B, Chien EY, Mol CD, Fenalti G, Liu W, Katritch V, Abagyan R, Brooun A, Wells P, Bi FC, Hamel DJ, Kuhn P, Handel TM, Cherezov V, Stevens RC","Structures of the CXCR4 chemokine GPCR with small-molecule and cyclic peptide antagonists.","Science","2010","330","1066-71","ATCG3D+CHSAM+GPCR","3oe0 3oe6 3oe8 3oe9 3odu"
"2000","20875425","structure","Kim Y, Zhou M, Moy S, Morales J, Cunningham MA, Joachimiak A","High-resolution structure of the nitrile reductase QueF combined with molecular simulations provide insight into enzyme mechanism.","Journal of Molecular Biology","2010","404","127-37","MCSG","3bp1"
"1957","20869368","structure","Xu Q, Eguchi T, Mathews II, Rife CL, Chiu HJ, Farr CL, Feuerhelm J, Jaroszewski L, Klock HE, Knuth MW, Miller MD, Weekes D, Elsliger MA, Deacon AM, Godzik A, Lesley SA, Wilson IA","Insights into substrate specificity of geranylgeranyl reductases revealed by the structure of digeranylgeranylglycerophospholipid reductase, an essential enzyme in the biosynthesis of archaeal membrane lipids.","Journal of Molecular Biology","2010","404","403-17","JCSG","3oz2"
"2392","20855604","structure","Egea PF, Stroud RM","Lateral opening of a translocon upon entry of protein suggests the mechanism of insertion into membranes.","Proceedings of the National Academy of Sciences of the United States of America","2010","107","17182-7","CSMP","3mp7"
"1939","20836087","structure","Das D, Finn RD, Abdubek P, Astakhova T, Axelrod HL, Bakolitsa C, Cai X, Carlton D, Chen C, Chiu HJ, Chiu M, Clayton T, Deller MC, Duan L, Ellrott K, Farr CL, Feuerhelm J, Grant JC, Grzechnik A, Han GW, Jaroszewski L, Jin KK, Klock HE, Knuth MW, Kozbial P, Krishna SS, Kumar A, Lam WW, Marciano D, Miller MD, Morse AT, Nigoghossian E, Nopakun A, Okach L, Puckett C, Reyes R, Tien HJ, Trame CB, van den Bedem H, Weekes D, Wooten T, Xu Q, Yeh A, Zhou J, Hodgson KO, Wooley J, Elsliger MA, Deacon AM, Godzik A, Lesley SA, Wilson IA","The crystal structure of a bacterial Sufu-like protein defines a novel group of bacterial proteins that are similar to the N-terminal domain of human Sufu.","Protein Science","2010","19","2131-40","JCSG","3k5j"
"2426","20833142","structure","Pielak RM, Chou JJ","Solution NMR structure of the V27A drug resistant mutant of influenza A M2 channel.","Biochemical and biophysical research communications","2010","401","58-63","MPSbyNMR","2kwx"
"1911","20818668","structure","Stark JL, Mercier KA, Mueller GA, Acton TB, Xiao R, Montelione GT, Powers R","Solution structure and function of YndB, an AHSA1 protein from Bacillus subtilis.","Proteins","2010","78","3328-40","NESG",""
"2391","20739007","structure","Lee JK, Stroud RM","Unlocking the eukaryotic membrane protein structural proteome.","Current Opinion in Structural Biology","2010","20","464-70","CSMP",""
"1926","20739005","structure","Nyola A, Karpowich NK, Zhen J, Marden J, Reith ME, Wang DN","Substrate and drug binding sites in LeuT.","Current Opinion in Structural Biology","2010","20","415-22","NYCOMPS",""
"2006","20737437","note","Sampathkumar P, Lu F, Zhao X, Li Z, Gilmore J, Bain K, Rutter ME, Gheyi T, Schwinn KD, Bonanno JB, Pieper U, Fajardo JE, Fiser A, Almo SC, Swaminathan S, Chance MR, Baker D, Atwell S, Thompson DA, Emtage JS, Wasserman SR, Sali A, Sauder JM, Burley SK","Structure of a putative BenF-like porin from Pseudomonas fluorescens Pf-5 at 2.6 A resolution.","Proteins","2010","78","3056-62","NYSGXRC","3jty"
"1921","20734145","structure","Tang Y, Schneider WM, Shen Y, Raman S, Inouye M, Baker D, Roth MJ, Montelione GT","Fully automated high-quality NMR structure determination of small (2)H-enriched proteins.","Journal of Structural and Functional Genomics","2010","11","223-32","NESG",""
"2042","20729860","structure","Peterson FC, Burgie ES, Park SY, Jensen DR, Weiner JJ, Bingman CA, Chang CE, Cutler SR, Phillips GN, Volkman BF","Structural basis for selective activation of ABA receptors.","Nature Structural & Molecular Biology","2010","17","1109-13","CESG","3nj1 3nj0 3njo"
"2010","20709084","structure","Johnson MA, Jaudzems K, Wüthrich K","NMR Structure of the SARS-CoV Nonstructural Protein 7 in Solution at pH 6.5.","Journal of Molecular Biology","2010","402","619-28","JCSG","2kys"
"1906","20696400","structure","Arbing MA, Handelman SK, Kuzin AP, Verdon G, Wang C, Su M, Rothenbacher FP, Abashidze M, Liu M, Hurley JM, Xiao R, Acton T, Inouye M, Montelione GT, Woychik NA, Hunt JF","Crystal structures of Phd-Doc, HigA, and YeeU establish multiple evolutionary links between microbial growth-regulating toxin-antitoxin systems.","Structure","2010","18","996-1010","NESG",""
"1934","20691189","structure","Tchigvintsev A, Xu X, Singer A, Chang C, Brown G, Proudfoot M, Cui H, Flick R, Anderson WF, Joachimiak A, Galperin MY, Savchenko A, Yakunin AF","Structural Insight into the Mechanism of c-di-GMP Hydrolysis by EAL Domain Phosphodiesterases.","Journal of Molecular Biology","2010","402","524-38","MCSG","2r6o"
"2064","20687805","structure","Manosalva PM, Park SW, Forouhar F, Tong L, Fry WE, Klessig DF","Methyl esterase 1 (StMES1) is required for systemic acquired resistance in potato.","Molecular plant-microbe interactions : MPMI","2010","23","1151-63","NESG",""
"2012","20669948","structure","Wacker D, Fenalti G, Brown MA, Katritch V, Abagyan R, Cherezov V, Stevens RC","Conserved binding mode of human beta2 adrenergic receptor inverse agonists and antagonist revealed by X-ray crystallography.","Journal of the American Chemical Society","2010","132","11443-5","ATCG3D+GPCR","3ny8 3ny9 3nya"
"2016","20665265","structure","Cherezov V, Abola E, Stevens RC","Recent progress in the structure determination of GPCRs, a membrane protein family with high potential as pharmaceutical targets.","Methods in Molecular Biology","2010","654","141-68","ATCG3D",""
"1922","20604542","structure","Xiang DF, Patskovsky Y, Xu C, Fedorov AA, Fedorov EV, Sisco AA, Sauder JM, Burley SK, Almo SC, Raushel FM","Functional identification and structure determination of two novel prolidases from cog1228 in the amidohydrolase superfamily .","Biochemistry","2010","49","6791-803","NYSGXRC","3mkv 3feq 3n2c"
"1914","20602357","structure","Tang Y, Xiao R, Ciccosanti C, Janjua H, Lee DY, Everett JK, Swapna GV, Acton TB, Rost B, Montelione GT","Solution NMR structure of Lin0431 protein from Listeria innocua reveals high structural similarity with domain II of bacterial transcription antitermination protein NusG.","Proteins","2010","78","2563-8","NESG",""
"1904","20589905","structure","Lee HW, Wylie G, Bansal S, Wang X, Barb AW, Macnaughtan MA, Ertekin A, Montelione GT, Prestegard JH","Three-dimensional structure of the weakly associated protein homodimer SeR13 using RDCs and paramagnetic surface mapping.","Protein Science","2010","19","1673-85","NESG",""
"2066","20584901","structure","Arragain S, Handelman SK, Forouhar F, Wei FY, Tomizawa K, Hunt JF, Douki T, Fontecave M, Mulliez E, Atta M","Identification of eukaryotic and prokaryotic methylthiotransferase for biosynthesis of 2-methylthio-N6-threonylcarbamoyladenosine in tRNA.","Journal of Biological Chemistry","2010","285","28425-33","NESG",""
"1910","20581222","structure","Tan K, Tesar C, Wilton R, Keigher L, Babnigg G, Joachimiak A","Novel {alpha}-glucosidase from human gut microbiome: substrate specificities and their switch.","FASEB Journal","2010","24","3939-49","MCSG","3n04 3m46 3m6d 3mkk"
"1908","20532204","structure","Ellrott K, Jaroszewski L, Li W, Wooley JC, Godzik A","Expansion of the protein repertoire in newly explored environments: human gut microbiome specific protein families.","PLoS Computational Biology","2010","6","e1000798","JCMM+JCSG",""
"1903","20493876","structure","Johnson MA, Chatterjee A, Neuman BW, Wüthrich K","SARS coronavirus unique domain: three-domain molecular architecture in solution and RNA binding.","Journal of Molecular Biology","2010","400","724-42","JCSG","2kaf 2kqv 2kqw"
"1907","20471400","structure","Dermoun Z, Foulon A, Miller MD, Harrington DJ, Deacon AM, Sebban-Kreuzer C, Roche P, Lafitte D, Bornet O, Wilson IA, Dolla A","TM0486 from the hyperthermophilic anaerobe Thermotoga maritima is a thiamin-binding protein involved in response of the cell to oxidative conditions.","Journal of Molecular Biology","2010","400","463-76","JCSG","1vk8"
"1927","20463728","structure","Karpowich NK, Wang DN","Biophysics: Transporter in the spotlight.","Nature","2010","465","171-2","NYCOMPS",""
"1931","20460131","structure","Hom RA, Chang PY, Roy S, Musselman CA, Glass KC, Selezneva AI, Gozani O, Ismagilov RF, Cleary ML, Kutateladze TG","Molecular mechanism of MLL PHD3 and RNA recognition by the Cyp33 RRM domain.","Journal of Molecular Biology","2010","400","145-54","ATCG3D","3mdf"
"2053","20460129","structure","Jha RK, Leaver-Fay A, Yin S, Wu Y, Butterfoss GL, Szyperski T, Dokholyan NV, Kuhlman B","Computational design of a PAK1 binding protein.","Journal of Molecular Biology","2010","400","257-70","NESG",""
"1887","20455271","structure","Liu G, Huang YJ, Xiao R, Wang D, Acton TB, Montelione GT","Solution NMR structure of the ARID domain of human AT-rich interactive domain-containing protein 3A: a human cancer protein interaction network target.","Proteins","2010","78","2170-5","NESG",""
"1899","20427268","structure","Kuznetsova E, Xu L, Singer A, Brown G, Dong A, Flick R, Cui H, Cuff M, Joachimiak A, Savchenko A, Yakunin AF","Structure and activity of the metal-independent fructose 1,6-bisphosphatase YK23 from Saccharomyces cerevisiae.","Journal of Biological Chemistry","2010","285","21049-59","MCSG","3f3k 3lg2 3ll4"
"1898","20415463","structure","Hall RS, Agarwal R, Hitchcock D, Sauder JM, Burley SK, Swaminathan S, Raushel FM","Discovery and Structure Determination of the Orphan Enzyme Isoxanthopterin Deaminase .","Biochemistry","2010","49","4374-82","NYSGXRC","2paj"
"1896","20399190","structure","Matsumoto Y, Xu Q, Miyazaki S, Kaito C, Farr CL, Axelrod HL, Chiu HJ, Klock HE, Knuth MW, Miller MD, Elsliger MA, Deacon AM, Godzik A, Lesley SA, Sekimizu K, Wilson IA","Structure of a virulence regulatory factor CvfB reveals a novel winged helix RNA binding module.","Structure","2010","18","537-47","JCSG","3go5"
"1932","20364333","structure","Abendroth J, McCormick MS, Edwards TE, Staker B, Loewen R, Gifford M, Rifkin J, Mayer C, Guo W, Zhang Y, Myler P, Kelley A, Analau E, Hewitt SN, Napuli AJ, Kuhn P, Ruth RD, Stewart LJ","X-ray structure determination of the glycine cleavage system protein H of Mycobacterium tuberculosis using an inverse Compton synchrotron X-ray source.","Journal of Structural and Functional Genomics","2010","11","91-100","ATCG3D+SSGCID","3ift"
"1897","20310066","structure","Sampathkumar P, Ozyurt SA, Do J, Bain KT, Dickey M, Rodgers LA, Gheyi T, Sali A, Kim SJ, Phillips J, Pieper U, Fernandez-Martinez J, Franke JD, Martel A, Tsuruta H, Atwell S, Thompson DA, Emtage JS, Wasserman SR, Rout MP, Sauder JM, Burley SK","Structures of the autoproteolytic domain from the Saccharomyces cerevisiae nuclear pore complex component, Nup145.","Proteins","2010","78","1992-8","NYSGXRC","3kep 3kes"
"1900","20229607","structure","Bae E, Bitto E, Bingman CA, McCoy JG, Wesenberg GE, Phillips GN","Crystal structure of an eIF4G-like protein from Danio rerio.","Proteins","2010","78","1803-6","CESG","2i2o"
"1909","20212037","structure","Aramini JM, Tubbs JL, Kanugula S, Rossi P, Ertekin A, Maglaqui M, Hamilton K, Ciccosanti CT, Jiang M, Xiao R, Soong TT, Rost B, Acton TB, Everett JK, Pegg AE, Tainer JA, Montelione GT","Structural basis of O6-alkylguanine recognition by a bacterial alkyltransferase-like DNA repair protein.","Journal of Biological Chemistry","2010","285","13736-41","NESG",""
"1956","20208147","note","Cooper DR, Grelewska K, Kim CY, Joachimiak A, Derewenda ZS","The structure of DinB from Geobacillus stearothermophilus: a representative of a unique four-helix-bundle superfamily.","Acta Crystallographica Section F: Structural Biology and Crystallization Communications","2010","66","219-24","MCSG","3gor"
"1880","20161694","structure","Koclega KD, Chruszcz M, Zimmerman MD, Bujacz G, Minor W","'Hot' macromolecular crystals.","Crystal Growth & Design","2010","10","580-586","MCSG","2ih2 2ih3 2ih4"
"1882","20156452","structure","Sampathkumar P, Ozyurt SA, Miller S, Bain KT, Rutter ME, Gheyi T, Abrams B, Wang Y, Atwell S, Luz JG, Thompson DA, Wasserman SR, Emtage JS, Park EC, Rongo C, Jin Y, Klemke RL, Sauder JM, Burley SK","Structures of PHR Domains from Mus musculus Phr1 (Mycbp2) Explain the Loss-of-Function Mutation (Gly1092-->Glu) of the C. elegans Ortholog RPM-1.","Journal of Molecular Biology","2010","397","883-92","NYSGXRC","3gbw 3hwj"
"1876","20138056","structure","Nocek BP, Gillner DM, Fan Y, Holz RC, Joachimiak A","Structural Basis for Catalysis by the Mono- and Dimetalated Forms of the dapE-Encoded N-succinyl-l,l-Diaminopimelic Acid Desuccinylase.","Journal of Molecular Biology","2010","397","617-26","MCSG","3isz 3ic1"
"1942","20124705","structure","Larson SB, Day JS, Nguyen C, Cudney R, McPherson A","Structure of bovine pancreatic ribonuclease complexed with uridine 5'-monophosphate at 1.60 A resolution.","Acta Crystallographica Section F: Structural Biology and Crystallization Communications","2010","66","113-20","CHTSB","3jw1"
"1853","20122942","structure","Das D, Moiani D, Axelrod HL, Miller MD, McMullan D, Jin KK, Abdubek P, Astakhova T, Burra P, Carlton D, Chiu HJ, Clayton T, Deller MC, Duan L, Ernst D, Feuerhelm J, Grant JC, Grzechnik A, Grzechnik SK, Han GW, Jaroszewski L, Klock HE, Knuth MW, Kozbial P, Krishna SS, Kumar A, Marciano D, Morse AT, Nigoghossian E, Okach L, Paulsen J, Reyes R, Rife CL, Sefcovic N, Tien HJ, Trame CB, van den Bedem H, Weekes D, Xu Q, Hodgson KO, Wooley J, Elsliger MA, Deacon AM, Godzik A, Lesley SA, Tainer JA, Wilson IA","Crystal Structure of the First Eubacterial Mre11 Nuclease Reveals Novel Features that May Discriminate Substrates During DNA Repair.","Journal of Molecular Biology","2010","397","647-663","JCSG","2q8u"
"1881","20088583","structure","Hall RS, Fedorov AA, Marti-Arbona R, Fedorov EV, Kolb P, Sauder JM, Burley SK, Shoichet BK, Almo SC, Raushel FM","The hunt for 8-oxoguanine deaminase.","Accounts of Chemical Research","2010","132","1762-3","NYSGXRC","3h4u"
"1851","20077570","structure","Liu G, Huang YJ, Xiao R, Wang D, Acton TB, Montelione GT","NMR structure of F-actin-binding domain of Arg/Abl2 from Homo sapiens.","Proteins","2010","78","1326-30","NESG","2kk1"
"1848","20077512","structure","Scheeff ED, Axelrod HL, Miller MD, Chiu HJ, Deacon AM, Wilson IA, Manning G","Genomics, evolution, and crystal structure of a new family of bacterial spore kinases.","Proteins","2010","78","1470-82","JCSG","2q83"
"1901","20073081","structure","Jensen DR, Woytovich C, Li M, Duvnjak P, Cassidy MS, Frederick RO, Bergeman LF, Peterson FC, Volkman BF","Rapid, robotic, small-scale protein production for NMR screening and structure determination.","Protein Science","2010","19","570-8","CESG","2kom"
"2008","20057058","structure","Lakshminarasimhan D, Eswaramoorthy S, Burley SK, Swaminathan S","Structure of YqgQ protein from Bacillus subtilis, a conserved hypothetical protein.","Acta Crystallographica Section F: Structural Biology and Crystallization Communications","2010","66","8-11","NYSGXRC","2nn4"
"1843","20037581","structure","Burgin AB, Magnusson OT, Singh J, Witte P, Staker BL, Bjornsson JM, Thorsteinsdottir M, Hrafnsdottir S, Hagen T, Kiselyov AS, Stewart LJ, Gurney ME","Design of phosphodiesterase 4D (PDE4D) allosteric modulators for enhancing cognition with improved safety.","Nature Biotechnology","2010","28","63-70","ATCG3D","3g58 3g4g 3g45 3g4i 3g4k 3g4l 3iad"
"2065","20023028","structure","Awano N, Rajagopal V, Arbing M, Patel S, Hunt J, Inouye M, Phadtare S","Escherichia coli RNase R has dual activities, helicase and RNase.","Journal of Bacteriology","2010","192","1344-52","NESG",""
"1839","20010838","structure","Waight AB, Love J, Wang DN","Structure and mechanism of a pentameric formate channel.","Nature Structural & Molecular Biology","2010","17","31-7","NYCOMPS","3kly 3klz"
"1837","20008068","structure","Chang C, Tesar C, Gu M, Babnigg G, Joachimiak A, Pokkuluri PR, Szurmant H, Schiffer M","Extra-cytoplasmic PAS-like Domains are Common In Signal Transduction Proteins.","Journal of Bacteriology","2010","192","1156-9","MCSG","3cwf"
"1883","20007320","structure","Arragain S, Garcia-Serres R, Blondin G, Douki T, Clemancey M, Latour JM, Forouhar F, Neely H, Montelione GT, Hunt JF, Mulliez E, Fontecave M, Atta M","Post-translational modification of ribosomal proteins: structural and functional characterization of RimO from Thermotoga maritima, a radical S-adenosylmethionine methylthiotransferase.","Journal of Biological Chemistry","2010","285","5792-801","NESG","1oct 2fb2 1k3r 1uwv"
"1844","20000709","structure","Li L, Du W, Ismagilov RF","Multiparameter screening on SlipChip used for nanoliter protein crystallization combining free interface diffusion and microbatch methods.","Journal of the American Chemical Society","2010","132","112-9","ATCG3D","3ii9"
"1845","20000708","structure","Li L, Du W, Ismagilov R","User-loaded SlipChip for equipment-free multiplexed nanoliter-scale experiments.","Journal of the American Chemical Society","2010","132","106-11","ATCG3D","3kjr"
"1841","19938152","structure","Bianchetti CM, Blouin GC, Bitto E, Olson JS, Phillips GN","The structure and NO binding properties of the nitrophorin-like heme-binding protein from Arabidopsis thaliana gene locus At1g79260.1.","Proteins","2010","78","917-31","CESG","2a13 2q4n 3emm"
"1935","19932181","structure","Luo HB, Zheng H, Zimmerman MD, Chruszcz M, Skarina T, Egorova O, Savchenko A, Edwards AM, Minor W","Crystal structure and molecular modeling study of N-carbamoylsarcosine amidase Ta0454 from Thermoplasma acidophilum.","Journal of Structural Biology","2010","169","304-11","MCSG","3eef"
"1810","19927321","structure","Singarapu KK, Mills JL, Xiao R, Acton T, Punta M, Fischer M, Honig B, Rost B, Montelione GT, Szyperski T","Solution NMR structures of proteins VPA0419 from Vibrio parahaemolyticus and yiiS from Shigella flexneri provide structural coverage for protein domain family PFAM 04175.","Proteins","2010","78","779-84","NESG","2k3i 2jz5"
"1831","19913036","structure","Xu Q, Bateman A, Finn RD, Abdubek P, Astakhova T, Axelrod HL, Bakolitsa C, Carlton D, Chen C, Chiu HJ, Chiu M, Clayton T, Das D, Deller MC, Duan L, Ellrott K, Ernst D, Farr CL, Feuerhelm J, Grant JC, Grzechnik A, Han GW, Jaroszewski L, Jin KK, Klock HE, Knuth MW, Kozbial P, Krishna SS, Kumar A, Marciano D, McMullan D, Miller MD, Morse AT, Nigoghossian E, Nopakun A, Okach L, Puckett C, Reyes R, Rife CL, Sefcovic N, Tien HJ, Trame CB, van den Bedem H, Weekes D, Wooten T, Hodgson KO, Wooley J, Elsliger MA, Deacon AM, Godzik A, Lesley SA, Wilson IA","Bacterial Pleckstrin Homology Domains: A Prokaryotic Origin for the PH Domain.","Journal of Molecular Biology","2010","396","31-46","JCSG","3dcx 3hsa 3b77"
"1827","19787770","structure","Ragumani S, Sauder JM, Burley SK, Swaminathan S","Structural studies on cytosolic domain of magnesium transporter MgtE from Enterococcus faecalis.","Proteins","2010","78","487-91","NYSGXRC","2oux"
"1884","","structure","Kim D, Hunt JF, Schirmer T","Making, breaking and sensing of cyclic di-GMP: Structural aspects","The Second Messenger Cyclic Diguanylate","2010","Am Soc Micro Bio Press","Washington DC","NESG","3ign 2rde 2v0n 1w25"
"1838","20017931","structure","Chang C, Coggill P, Bateman A, Finn RD, Cymborowski M, Otwinowski Z, Minor W, Volkart L, Joachimiak A","The structure of pyogenecin immunity protein, a novel bacteriocin-like immunity protein from Streptococcus pyogenes.","BMC Structural Biology","2009","9","75","MCSG","2fu2"
"1834","19955416","structure","Zawadzka AM, Kim Y, Maltseva N, Nichiporuk R, Fan Y, Joachimiak A, Raymond KN","Characterization of a Bacillus subtilis transporter for petrobactin, an anthrax stealth siderophore.","Proceedings of the National Academy of Sciences of the United States of America","2009","106","21854-9","MCSG","3gfv"
"1811","19888688","structure","Mercier KA, Mueller GA, Acton TB, Xiao R, Montelione GT, Powers R","(1)H, (13)C, and (15)N NMR assignments for the Bacillus subtilis yndB START domain.","Biomolecular NMR Assignments","2009","3","191-4","NESG","2kew"
"1825","19883118","structure","Rakus JF, Kalyanaraman C, Fedorov AA, Fedorov EV, Mills-Groninger FP, Toro R, Bonanno J, Bain K, Sauder JM, Burley SK, Almo SC, Jacobson MP, Gerlt JA","Computation-Facilitated Assignment of the Function in the Enolase Superfamily: A Regiochemically Distinct Galactarate Dehydratase from Oceanobacillus iheyensis .","Biochemistry","2009","48","11546-58","NYSGXRC","2oqy"
"1822","19865084","structure","Levin EJ, Quick M, Zhou M","Crystal structure of a bacterial homologue of the kidney urea transporter.","Nature","2009","462","757-61","NYCOMPS","3k3f 3k3g"
"1826","19857646","structure","Sampaleanu LM, Bonanno JB, Ayers M, Koo J, Tammam S, Burley SK, Almo SC, Burrows LL, Howell PL","Periplasmic domains of Pseudomonas aeruginosa PilN and PilO form a stable heterodimeric complex.","Journal of Molecular Biology","2009","394","143-59","NYSGXRC","2rjz"
"1820","19840941","structure","Tan K, Borovilos M, Zhou M, Horer S, Clancy S, Moy S, Volkart LL, Sassoon J, Baumann U, Joachimiak A","The Mannitol Operon Repressor MtlR Belongs to a New Class of Transcription Regulators in Bacteria.","Journal of Biological Chemistry","2009","284","36670-9","MCSG","3brj 3c8g"
"1821","19828617","structure","Serrano P, Johnson MA, Chatterjee A, Neuman BW, Joseph JS, Buchmeier MJ, Kuhn P, Wüthrich K","Nuclear magnetic resonance structure of the nucleic acid-binding domain of severe acute respiratory syndrome coronavirus nonstructural protein 3.","Journal of Virology","2009","83","12998-3008","JCSG","2k87"
"1833","19805138","structure","Petrey D, Fischer M, Honig B","Structural relationships among proteins with different global topologies and their implications for function annotation strategies.","Proceedings of the National Academy of Sciences of the United States of America","2009","106","17377-82","NESG","1f51 1eb3 1y4t 2ace 3btp 2acw 2i2s 1kj1 2bt9 1rcu 1wq4 1vgr 2iz6"
"1830","19805034","structure","Kiser PD, Golczak M, Lodowski DT, Chance MR, Palczewski K","Crystal structure of native RPE65, the retinoid isomerase of the visual cycle.","Proceedings of the National Academy of Sciences of the United States of America","2009","106","17325-30","NYSGXRC","3fsn"
"1804","19787035","structure","Jaroszewski L, Li Z, Krishna SS, Bakolitsa C, Wooley J, Deacon AM, Wilson IA, Godzik A","Exploration of uncharted regions of the protein universe.","PLoS Biology","2009","7","e1000205","JCSG",""
"1819","19768810","structure","Wang S, Kirillova O, Chruszcz M, Gront D, Zimmerman MD, Cymborowski MT, Shumilin IA, Skarina T, Gorodichtchenskaia E, Savchenko A, Edwards AM, Minor W","The crystal structure of the AF2331 protein from Archaeoglobus fulgidus DSM 4304 forms an unusual interdigitated dimer with a new type of alpha + beta fold.","Protein Science","2009","18","2410-9","MCSG","2fdo"
"1803","19762644","structure","Zhang Y, Thiele I, Weekes D, Li Z, Jaroszewski L, Ginalski K, Deacon AM, Wooley J, Lesley SA, Wilson IA, Palsson B, Osterman A, Godzik A","Three-dimensional structural view of the central metabolic network of Thermotoga maritima.","Science","2009","325","1544-9","JCMM+JCSG",""
"1829","19660503","structure","Alvarado JJ, Nemkal A, Sauder JM, Russell M, Akiyoshi DE, Shi W, Almo SC, Weiss LM","Structure of a microsporidian methionine aminopeptidase type 2 complexed with fumagillin and TNP-470.","Molecular and Biochemical Parasitology","2009","168","158-67","NYSGXRC","3fm3 3fmq 3fmr"
"1800","19653655","structure","Derewenda U, Boczek T, Gorres KL, Yu M, Hung LW, Cooper D, Joachimiak A, Raines RT, Derewenda ZS","Structure and function of Bacillus subtilis YphP, a prokaryotic disulfide isomerase with a CXC catalytic motif .","Biochemistry","2009","48","8664-71","MCSG","3fhk"
"1801","19653298","structure","Tan K, Sather A, Robertson JL, Moy S, Roux B, Joachimiak A","Structure and electrostatic property of cytoplasmic domain of ZntB transporter.","Protein Science","2009","18","2043-2052","MCSG","3ck6"
"1823","19608859","structure","Shaffer PL, Goehring A, Shankaranarayanan A, Gouaux E","Structure and mechanism of a Na+-independent amino acid transporter.","Science","2009","325","1010-4","NYCOMPS","3gi8 3gi9 3gia"
"1781","19567872","structure","Xu Q, Traag BA, Willemse J, McMullan D, Miller MD, Elsliger MA, Abdubek P, Astakhova T, Axelrod HL, Bakolitsa C, Carlton D, Chen C, Chiu HJ, Chruszcz M, Clayton T, Das D, Deller MC, Duan L, Ellrott K, Ernst D, Farr CL, Feuerhelm J, Grant JC, Grzechnik A, Grzechnik SK, Han GW, Jaroszewski L, Jin KK, Klock HE, Knuth MW, Kozbial P, Krishna SS, Kumar A, Marciano D, Minor W, Mommaas AM, Morse AT, Nigoghossian E, Nopakun A, Okach L, Oommachen S, Paulsen J, Puckett C, Reyes R, Rife CL, Sefcovic N, Tien HJ, Trame CB, van den Bedem H, Wang S, Weekes D, Hodgson KO, Wooley J, Deacon AM, Godzik A, Lesley SA, Wilson IA, van Wezel GP","Structural and functional characterizations of SsgB, a conserved activator of developmental cell division in morphologically complex actinomycetes.","Journal of Biological Chemistry","2009","284","25268-79","JCSG+MCSG","3cm1"
"1789","19553681","structure","Currie MA, Merino F, Skarina T, Wong AH, Singer A, Brown G, Savchenko A, Caniuguir A, Guixé V, Yakunin AF, Jia Z","ADP-dependent 6-Phosphofructokinase from Pyrococcus horikoshii OT3: STRUCTURE DETERMINATION AND BIOCHEMICAL CHARACTERIZATION OF PH1645.","Journal of Biological Chemistry","2009","284","22664-71","MCSG","3drw"
"1791","19508282","structure","Kang Y, Lunin VV, Skarina T, Savchenko A, Schurr MJ, Hoang TT","The long-chain fatty acid sensor, PsrA, modulates the expression of rpoS and the type III secretion exsCEBA operon in Pseudomonas aeruginosa.","Molecular Microbiology","2009","73","120-36","MCSG","2fbq"
"1764","19459936","structure","Wang Z, Chernyshev A, Koehn EM, Manuel TD, Lesley SA, Kohen A","Oxidase activity of a flavin-dependent thymidylate synthase.","FEBS Journal","2009","276","2801-10","JCSG","1024 1025 1026 1027 1028 102b 1029 102a 1kq4"
"1728","19455708","structure","Eletsky A, Sukumaran DK, Xiao R, Acton TB, Rost B, Montelione GT, Szyperski T","NMR structure of protein YvyC from Bacillus subtilis reveals unexpected structural similarity between two PFAM families.","Proteins","2009","76","1037-41","NESG","2hc5"
"1763","19450606","structure","Xu Q, Carlton D, Miller MD, Elsliger MA, Krishna SS, Abdubek P, Astakhova T, Burra P, Chiu HJ, Clayton T, Deller MC, Duan L, Elias Y, Feuerhelm J, Grant JC, Grzechnik A, Grzechnik SK, Han GW, Jaroszewski L, Jin KK, Klock HE, Knuth MW, Kozbial P, Kumar A, Marciano D, McMullan D, Morse AT, Nigoghossian E, Okach L, Oommachen S, Paulsen J, Reyes R, Rife CL, Sefcovic N, Trame C, Trout CV, van den Bedem H, Weekes D, Hodgson KO, Wooley J, Deacon AM, Godzik A, Lesley SA, Wilson IA","Crystal structure of histidine phosphotransfer protein ShpA, an essential regulator of stalk biogenesis in Caulobacter crescentus.","Journal of Molecular Biology","2009","390","686-98","JCSG","2ooc"
"1790","19435325","structure","Chimnaronk S, Forouhar F, Sakai J, Yao M, Tron CM, Atta M, Fontecave M, Hunt JF, Tanaka I","Snapshots of Dynamics in Synthesizing N6-Isopentenyladenosine at the tRNA Anticodon","Biochemistry","2009","48","5057-5065","NESG","2zm5 2zxu 2qgn 3exa"
"1796","19407370","structure","Larson  SB, Day  JS, Nguyen  C, Cudney  R, McPherson  A","Structure of pig heart citrate synthase at 1.78 A resolution.","Acta Crystallographica Section F: Structural Biology and Crystallization Communications","2009","65","430-4","CHTSB","3enj"
"1741","19383143","structure","Raymond A, Lovell S, Lorimer D, Walchli J, Mixon M, Wallace E, Thompkins K, Archer K, Burgin A, Stewart L","Combined protein construct and synthetic gene engineering for heterologous protein expression and crystallization using Gene Composer.","BMC Biotechnology","2009","9","37","ATCG3D","2rhh 2rhj 2rhl 2rho"
"1760","19370033","structure","Koehn EM, Fleischmann T, Conrad JA, Palfey BA, Lesley SA, Mathews II, Kohen A","An unusual mechanism of thymidylate biosynthesis in organisms containing the thyX gene.","Nature","2009","458","919-23","JCSG","1o24 1o25 1o26 1o27 1o28 1o2b 1029 1o2a 1kq4"
"1744","19358546","structure","Xiang DF, Xu C, Kumaran D, Brown AC, Sauder JM, Burley SK, Swaminathan S, Raushel FM","Functional Annotation of Two New Carboxypeptidases from the Amidohydrolase Superfamily of Enzymes.","Biochemistry","2009","48","4567-76","NYSGXRC","2qs8"
"1867","19357160","structure","Yamamoto S, Eletsky A, Szyperski T, Hay J, Ruyechan WT","Analysis of the varicella-zoster virus IE62 N-terminal acidic transactivating domain and its interaction with the human mediator complex.","Journal of Virology","2009","83","6300-5","NESG",""
"1738","19326460","structure","Lytle BL, Song J, de la Cruz NB, Peterson FC, Johnson KA, Bingman CA, Phillips GN, Volkman BF","Structures of two Arabidopsis thaliana major latex proteins represent novel helix-grip folds.","Proteins","2009","76","237-43","CESG","1vjh 2i9y"
"1761","19307717","structure","Zheng M, Cooper DR, Grossoehme NE, Yu M, Hung LW, Cieslik M, Derewenda U, Lesley SA, Wilson IA, Giedroc DP, Derewenda ZS","Structure of Thermotoga maritima TM0439: implications for the mechanism of bacterial GntR transcription regulators with Zn2+-binding FCD domains.","Acta Crystallographica Section D: Biological Crystallography","2009","65","356-65","JCSG","3fms"
"1745","19281183","structure","Xiang DF, Patskovsky Y, Xu C, Meyer AJ, Sauder JM, Burley SK, Almo SC, Raushel FM","Functional identification of incorrectly annotated prolidases from the amidohydrolase superfamily of enzymes.","Biochemistry","2009","48","3730-42","NYSGXRC","3be7 3dug"
"1743","19255463","structure","Larson  SB, Day  JS, Nguyen  C, Cudney  R, McPherson  A","High-resolution structure of proteinase K cocrystallized with digalacturonic acid.","Acta Crystallographica Section F: Structural Biology and Crystallization Communications","2009","65","192-8","CHTSB","3dyb"
"1724","19251641","structure","Leiman PG, Basler M, Ramagopal UA, Bonanno JB, Sauder JM, Pukatzki S, Burley SK, Almo SC, Mekalanos JJ","Type VI secretion apparatus and phage tail-associated protein complexes share a common evolutionary origin.","Proceedings of the National Academy of Sciences of the United States of America","2009","106","4154-9","NYSGXRC","2p5z"
"1735","19244251","structure","Minasov G, Padavattan S, Shuvalova L, Brunzelle JS, Miller DJ, Baslé A, Massa C, Collart FR, Schirmer T, Anderson WF","Crystal structures of YkuI and its complex with second messenger cyclic di-GMP suggests catalytic mechanism of phosphodiester bond cleavage by EAL domains","Journal of Biological Chemistry","2009","284","13174-84","MCSG","2bas"
"1723","19241471","structure","Bitto E, Bingman CA, Bittova L, Frederick RO, Fox BG, Phillips GN","X-ray structure of Danio rerio secretagogin: A hexa-EF-hand calcium sensor.","Proteins","2009","76","477-83","CESG","2be4"
"1734","19234762","note","Kim Y, Quartey P, Ng R, Zarembinski TI, Joachimiak A","Crystal structure of YfeU protein from Haemophilus influenzae: a predicted etherase involved in peptidoglycan recycling.","Journal of Structural and Functional Genomics","2009","10","151-6","MCSG","1nri"
"1726","19220063","structure","Sakai A, Fedorov AA, Fedorov EV, Schnoes AM, Glasner ME, Brown S, Rutter ME, Bain K, Chang S, Gheyi T, Sauder JM, Burley SK, Babbitt PC, Almo SC, Gerlt JA","Evolution of enzymatic activities in the enolase superfamily: stereochemically distinct mechanisms in two families of cis,cis-muconate lactonizing enzymes.","Biochemistry","2009","48","1445-53","NYSGXRC","3dg3 3dg6 3dg7 3dgb 3ct2"
"1721","19217401","structure","Xu Q, Sudek S, McMullan D, Miller MD, Geierstanger B, Jones DH, Krishna SS, Spraggon G, Bursalay B, Abdubek P, Acosta C, Ambing E, Astakhova T, Axelrod HL, Carlton D, Caruthers J, Chiu HJ, Clayton T, Deller MC, Duan L, Elias Y, Elsliger MA, Feuerhelm J, Grzechnik SK, Hale J, Won Han G, Haugen J, Jaroszewski L, Jin KK, Klock HE, Knuth MW, Kozbial P, Kumar A, Marciano D, Morse AT, Nigoghossian E, Okach L, Oommachen S, Paulsen J, Reyes R, Rife CL, Trout CV, van den Bedem H, Weekes D, White A, Wolf G, Zubieta C, Hodgson KO, Wooley J, Deacon AM, Godzik A, Lesley SA, Wilson IA","Structural Basis of Murein Peptide Specificity of a gamma-D-Glutamyl-L-Diamino Acid Endopeptidase.","Structure","2009","17","303-313","JCSG","2hbw 2fg0 2evr"
"1708","19191354","structure","Bertonati C, Punta M, Fischer M, Yachdav G, Forouhar F, Zhou W, Kuzin AP, Seetharaman J, Abashidze M, Ramelot TA, Kennedy MA, Cort JR, Belachew A, Hunt JF, Tong L, Montelione GT, Rost B","Structural genomics reveals EVE as a new ASCH/PUA-related domain.","Proteins","2009","75","760-73","NESG",""
"1717","19184529","note","Osipiuk J, Zhou M, Moy S, Collart F, Joachimiak A","X-Ray crystal structure of GarR-tartronate semialdehyde reductase from Salmonella typhimurium.","Journal of Structural and Functional Genomics","2009","10","249-53","MCSG","1vpd"
"1703","19173316","structure","Das D, Kozbial P, Axelrod HL, Miller MD, McMullan D, Krishna SS, Abdubek P, Acosta C, Astakhova T, Burra P, Carlton D, Chen C, Chiu HJ, Clayton T, Deller MC, Duan L, Elias Y, Elsliger MA, Ernst D, Farr C, Feuerhelm J, Grzechnik A, Grzechnik SK, Hale J, Han GW, Jaroszewski L, Jin KK, Johnson HA, Klock HE, Knuth MW, Kumar A, Marciano D, Morse AT, Murphy KD, Nigoghossian E, Nopakun A, Okach L, Oommachen S, Paulsen J, Puckett C, Reyes R, Rife CL, Sefcovic N, Sudek S, Tien H, Trame C, Trout CV, van den Bedem H, Weekes D, White A, Xu Q, Hodgson KO, Wooley J, Deacon AM, Godzik A, Lesley SA, Wilson IA","Crystal structure of a novel Sm-like protein of putative cyanophage origin at 2.60 A resolution.","Proteins","2009","75","296-307","JCSG","3by7"
"1762","19168617","structure","Johnson HA, Hampton E, Lesley SA","The Thermotoga maritima Trk potassium transporter--from frameshift to function.","Journal of Bacteriology","2009","191","2276-84","JCSG","2g1u"
"1713","19136124","structure","Zhao N, Guan J, Forouhar F, Tschaplinski TJ, Cheng ZM, Tong L, Chen F","Two poplar methyl salicylate esterases display comparable biochemical properties but divergent expression patterns.","Phytochemistry","2009","70","37-44","NESG","1y7i"
"1704","19127588","note","Das D, Krishna SS, McMullan D, Miller MD, Xu Q, Abdubek P, Acosta C, Astakhova T, Axelrod HL, Burra P, Carlton D, Chiu HJ, Clayton T, Deller MC, Duan L, Elias Y, Elsliger MA, Ernst D, Feuerhelm J, Grzechnik A, Grzechnik SK, Hale J, Han GW, Jaroszewski L, Jin KK, Klock HE, Knuth MW, Kozbial P, Kumar A, Marciano D, Morse AT, Murphy KD, Nigoghossian E, Okach L, Oommachen S, Paulsen J, Reyes R, Rife CL, Sefcovic N, Tien H, Trame CB, Trout CV, van den Bedem H, Weekes D, White A, Hodgson KO, Wooley J, Deacon AM, Godzik A, Lesley SA, Wilson IA","Crystal structure of the Fic (Filamentation induced by cAMP) family protein SO4266 (gi|24375750) from Shewanella oneidensis MR-1 at 1.6 A resolution.","Proteins","2009","75","264-71","JCSG","3eqx"
"1736","19101823","structure","Liu G, Forouhar F, Eletsky A, Atreya HS, Aramini JM, Xiao R, Huang YJ, Abashidze M, Seetharaman J, Liu J, Rost B, Acton T, Montelione GT, Hunt JF, Szyperski T","NMR and X-RAY structures of human E2-like ubiquitin-fold modifier conjugating enzyme 1 (UFC1) reveal structural and functional conservation in the metazoan UFM1-UBA5-UFC1 ubiquination pathway.","Journal of Structural and Functional Genomics","2009","10","127-36","NESG",""
"1659","19089981","note","Xu Q, Rife CL, Carlton D, Miller MD, Krishna SS, Elsliger MA, Abdubek P, Astakhova T, Chiu HJ, Clayton T, Duan L, Feuerhelm J, Grzechnik SK, Hale J, Han GW, Jaroszewski L, Jin KK, Klock HE, Knuth MW, Kumar A, McMullan D, Morse AT, Nigoghossian E, Okach L, Oommachen S, Paulsen J, Reyes R, van den Bedem H, Hodgson KO, Wooley J, Deacon AM, Godzik A, Lesley SA, Wilson IA","Crystal structure of a novel archaeal AAA+ ATPase SSO1545 from Sulfolobus solfataricus.","Proteins","2009","74","1041-9","JCSG","2fna"
"1716","19073594","structure","Brown G, Singer A, Lunin VV, Proudfoot M, Skarina T, Flick R, Kochinyan S, Sanishvili R, Joachimiak A, Edwards AM, Savchenko A, Yakunin AF","Structural and Biochemical Characterization of the Type II Fructose-1,6-bisphosphatase GlpX from Escherichia coli.","Journal of Biological Chemistry","2009","284","3784-92","MCSG","3d1r"
"1718","19058030","structure","Kim Y, Li H, Binkowski TA, Holzle D, Joachimiak A","Crystal structure of fatty acid/phospholipid synthesis protein PlsX from Enterococcus faecalis.","Journal of Structural and Functional Genomics","2009","10","157-63","MCSG","1u7n"
"1705","19052085","structure","Chatterjee  A, Johnson  MA, Serrano  P, Pedrini  B, Joseph  JS, Neuman  BW, Saikatendu  K, Buchmeier  MJ, Kuhn  P, Wüthrich  K","Nuclear magnetic resonance structure shows that the severe acute respiratory syndrome coronavirus-unique domain contains a macrodomain fold.","Journal of Virology","2009","83","1823-36","JCSG","2rnk 2jzd 2jzf 2jze"
"1632","19004028","structure","Vorobiev  SM, Su  M, Seetharaman  J, Huang  YJ, Chen  CX, Maglaqui  M, Janjua  H, Proudfoot  M, Yakunin  A, Xiao  R, Acton  TB, Montelione  GT, Tong  L","Crystal structure of human retinoblastoma binding protein 9.","Proteins","2009","74","526-9","NESG","2qs9"
"1660","19000695","structure","Xu Q, McMullan D, Abdubek P, Astakhova T, Carlton D, Chen C, Chiu HJ, Clayton T, Das D, Deller MC, Duan L, Elsliger MA, Feuerhelm J, Hale J, Han GW, Jaroszewski L, Jin KK, Johnson HA, Klock HE, Knuth MW, Kozbial P, Sri Krishna S, Kumar A, Marciano D, Miller MD, Morse AT, Nigoghossian E, Nopakun A, Okach L, Oommachen S, Paulsen J, Puckett C, Reyes R, Rife CL, Sefcovic N, Trame C, van den Bedem H, Weekes D, Hodgson KO, Wooley J, Deacon AM, Godzik A, Lesley SA, Wilson IA","A structural basis for the regulatory inactivation of DnaA.","Journal of Molecular Biology","2009","385","368-80","JCSG","3bos"
"1676","18952600","structure","Miallau  L, Faller  M, Chiang  J, Arbing  M, Guo  F, Cascio  D, Eisenberg  D","Structure and Proposed Activity of a Member of the VapBC Family of Toxin-Antitoxin Systems: VapBC-5 FROM MYCOBACTERIUM TUBERCULOSIS.","Journal of Biological Chemistry","2009","284","276-83","ISFI","3dbo"
"1631","18951393","structure","Rossi  P, Aramini  JM, Xiao  R, Chen  CX, Nwosu  C, Owens  LA, Maglaqui  M, Nair  R, Fischer  M, Acton  TB, Honig  B, Rost  B, Montelione  GT","Structural elucidation of the Cys-His-Glu-Asn proteolytic relay in the secreted CHAP domain enzyme from the human pathogen Staphylococcus saprophyticus.","Proteins","2009","74","515-519","NESG","2k3a"
"1583","18623062","structure","McCoy  JG, Bailey  LJ, Ng  YH, Bingman  CA, Wrobel  R, Weber  AP, Fox  BG, Phillips  GN","Discovery of sarcosine dimethylglycine methyltransferase from Galdieria sulphuraria.","Proteins","2009","74","368-77","CESG","2o57"
"1558","18561189","structure","McCoy  JG, Johnson  HD, Singh  S, Bingman  CA, Lei  IK, Thorson  JS, Phillips  GN","Structural characterization of CalO2: A putative orsellinic acid P450 oxidase in the calicheamicin biosynthetic pathway.","Proteins","2009","74","50-60","CESG","3buj"
"1559","18543330","structure","Bitto  E, Bingman  CA, Bittova  L, Houston  NL, Boston  RS, Fox  BG, Phillips  GN","X-ray structure of ILL2, an auxin-conjugate amidohydrolase from Arabidopsis thaliana.","Proteins","2009","74","61-71","CESG","1xmb"
"1662","19898606","structure","Chruszcz M, Zimmerman MD, Wang SR, Koclega KD, Zheng H, Evdokimova E, Kudritska M, Cymborowski M, Savchenko A, Edwards A, Minor W","Function-Biased Choice of Additives for Optimization of Protein Crystallization: The Case of the Putative Thioesterase PA5185 from Pseudomonas aeruginosa PAO1","Crystal Growth & Design","2008","8","4054-4061","MCSG","2av9 2ou5 2o6b 2o6t 2o6u"
"1943","19636888","note","Serrano P, Johnson MA, Chatterjee A, Pedrini B, Wüthrich K","NMR assignment of the nonstructural protein nsp3(1066-1181) from SARS-CoV.","Biomolecular NMR Assignments","2008","2","135-8","JCSG","2k87"
"1727","19079550","structure","Rao KN, Burley SK, Swaminathan S","UPF201 archaeal specific family members reveal structural similarity to RNA-binding proteins but low likelihood for RNA-binding function.","PLoS ONE","2008","3","e3903","NYSGXRC","2pzz 2nrq 2nwu 2ogk"
"1862","19043414","structure","Sheng Y, Laister RC, Lemak A, Wu B, Tai E, Duan S, Lukin J, Sunnerhagen M, Srisailam S, Karra M, Benchimol S, Arrowsmith CH","Molecular basis of Pirh2-mediated p53 ubiquitylation.","Nature Structural & Molecular Biology","2008","15","1334-42","NESG",""
"1706","19039680","structure","Parish D, Benach J, Liu G, Singarapu KK, Xiao R, Acton T, Su M, Bansal S, Prestegard JH, Hunt J, Montelione GT, Szyperski T","Protein chaperones Q8ZP25_SALTY from Salmonella typhimurium and HYAE_ECOLI from Escherichia coli exhibit thioredoxin-like structures despite lack of canonical thioredoxin active site sequence motif.","Journal of Structural and Functional Genomics","2008","9","41-9","NESG","2jzt 2hfd"
"1641","19021763","structure","Takeda M, Sugimori N, Torizawa T, Terauchi T, Ono AM, Yagi H, Yamaguchi Y, Kato K, Ikeya T, Jee J, Güntert P, Aceti DJ, Markley JL, Kainosho M","Structure of the putative 32 kDa myrosinase-binding protein from Arabidopsis (At3g16450.1) determined by SAIL-NMR.","FEBS Journal","2008","275","5873-84","CESG","2jz4"
"1644","19020349","structure","Gerdts  CJ, Elliott  M, Lovell  S, Mixon  MB, Napuli  AJ, Staker  BL, Nollert  P, Stewart  L","The plug-based nanovolume Microcapillary Protein Crystallization System (MPCS).","Acta Crystallographica Section D: Biological Crystallography","2008","64","1116-22","ATCG3D",""
"1681","19001261","structure","Nocek  B, Kochinyan  S, Proudfoot  M, Brown  G, Evdokimova  E, Osipiuk  J, Edwards  AM, Savchenko  A, Joachimiak  A, Yakunin  AF","Polyphosphate-dependent synthesis of ATP and ADP by the family-2 polyphosphate kinases in bacteria.","Proceedings of the National Academy of Sciences of the United States of America","2008","105","17730-5","MCSG","3czq"
"1682","18997778","structure","Singer  AU, Rohde  JR, Lam  R, Skarina  T, Kagan  O, Dileo  R, Chirgadze  NY, Cuff  ME, Joachimiak  A, Tyers  M, Sansonetti  PJ, Parsot  C, Savchenko  A","Structure of the Shigella T3SS effector IpaH defines a new class of E3 ubiquitin ligases.","Nature Structural & Molecular Biology","2008","15","1293-301","MCSG","3ckd"
"1608","18955706","structure","Pfleger  BF, Kim  Y, Nusca  TD, Maltseva  N, Lee  JY, Rath  CM, Scaglione  JB, Janes  BK, Anderson  EC, Bergman  NH, Hanna  PC, Joachimiak  A, Sherman  DH","Structural and functional analysis of AsbF: origin of the stealth 3,4-dihydroxybenzoic acid subunit for petrobactin biosynthesis.","Proceedings of the National Academy of Sciences of the United States of America","2008","105","17133-8","MCSG","3dx5"
"1642","18839960","structure","Singh  J, Salcius  M, Liu  SW, Staker  BL, Mishra  R, Thurmond  J, Michaud  G, Mattoon  DR, Printen  J, Christensen  J, Bjornsson  JM, Pollok  BA, Kiledjian  M, Stewart  L, Jarecki  J, Gurney  ME","DcpS as a therapeutic target for spinal muscular atrophy.","ACS Chemical Biology","2008","3","711-22","ATCG3D","3bl7 3bl9 3bla"
"1643","18832607","structure","Jaakola  VP, Griffith  MT, Hanson  MA, Cherezov  V, Chien  EY, Lane  JR, Ijzerman  AP, Stevens  RC","The 2.6 angstrom crystal structure of a human A2A adenosine receptor bound to an antagonist.","Science","2008","322","1211-7","ATCG3D+GPCR","3eml"
"1645","18831551","structure","Li  L, Nachtergaele  S, Seddon  AM, Tereshko  V, Ponomarenko  N, Ismagilov  RF","Simple host-guest chemistry to modulate the process of concentration and crystallization of membrane proteins by detergent capture in a microfluidic device.","Journal of the American Chemical Society","2008","130","14324-8","ATCG3D","3d48"
"1598","18824697","structure","Song  J, McGivern  JV, Nichols  KW, Markley  JL, Sheets  MD","Structural basis for RNA recognition by a type II poly(A)-binding protein.","Proceedings of the National Academy of Sciences of the United States of America","2008","105","15317-22","CESG","2jwn"
"1637","18783250","structure","Thackray  SJ, Bruckmann  C, Anderson  JL, Campbell  LP, Xiao  R, Zhao  L, Mowat  CG, Forouhar  F, Tong  L, Chapman  SK","Histidine 55 of tryptophan 2,3-dioxygenase is not an active site base but regulates catalysis by controlling substrate binding.","Biochemistry","2008","47","10677-84","NESG","2bk9 3e08"
"1579","18762196","structure","Cornilescu  G, Ulijasz  AT, Cornilescu  CC, Markley  JL, Vierstra  RD","Solution Structure of a Cyanobacterial Phytochrome GAF Domain in the Red-Light-Absorbing Ground State.","Journal of Molecular Biology","2008","383","403-413","CESG","2k2n"
"1634","18725644","structure","Das  K, Ma  LC, Xiao  R, Radvansky  B, Aramini  J, Zhao  L, Marklund  J, Kuo  RL, Twu  KY, Arnold  E, Krug  RM, Montelione  GT","Structural basis for suppression of a host antiviral response by influenza A virus.","Proceedings of the National Academy of Sciences of the United States of America","2008","105","13093-8","NESG","2rhk"
"1568","18721755","structure","Zhang  C, Bitto  E, Goff  RD, Singh  S, Bingman  CA, Griffith  BR, Albermann  C, Phillips  GN, Thorson  JS","Biochemical and structural insights of the early glycosylation steps in calicheamicin biosynthesis.","Chemistry & Biology","2008","15","842-53","CESG","3d0q 3d0r"
"1629","18715016","structure","Aramini  JM, Rossi  P, Huang  YJ, Zhao  L, Jiang  M, Maglaqui  M, Xiao  R, Locke  J, Nair  R, Rost  B, Acton  TB, Inouye  M, Montelione  GT","Solution NMR structure of the NlpC/P60 domain of lipoprotein Spr from Escherichia coli: structural evidence for a novel cysteine peptidase catalytic triad.","Biochemistry","2008","47","9715-7","NESG","2k1g"
"1564","18713742","structure","Bitto  E, Bingman  CA, Bittova  L, Kondrashov  DA, Bannen  RM, Fox  BG, Markley  JL, Phillips  GN","Structure of Human J-type Co-chaperone HscB Reveals a Tetracysteine Metal-binding Domain.","Journal of Biological Chemistry","2008","283","30184-92","CESG","3bvo"
"1630","18709443","structure","Cort  JR, Ramelot  TA, Murray  D, Acton  TB, Ma  LC, Xiao  R, Montelione  GT, Kennedy  MA","Structure of an acetyl-CoA binding protein from Staphylococcus aureus representing a novel subfamily of GCN5-related N-acetyltransferase-like proteins.","Journal of Structural and Functional Genomics","2008","9","7-20","NESG","1r57 2h5m"
"1601","18707125","structure","Legler  PM, Kumaran  D, Swaminathan  S, Studier  FW, Millard  CB","Structural characterization and reversal of the natural organophosphate resistance of a D-type esterase, Saccharomyces cerevisiae S-formylglutathione hydrolase.","Biochemistry","2008","47","9592-601","NYSGXRC","1pv1"
"1582","18703841","structure","Levin  EJ, Elsen  NL, Seder  KD, McCoy  JG, Fox  BG, Phillips  GN","X-ray structure of a soluble Rieske-type ferredoxin from Mus musculus.","Acta Crystallographica Section D: Biological Crystallography","2008","64","933-40","CESG","1vm9"
"1636","18656485","structure","Cort  JR, Selan  U, Schulte  A, Grimm  F, Kennedy  MA, Dahl  C","Allochromatium vinosum DsrC: solution-state NMR structure, redox properties, and interaction with DsrEFH, a protein essential for purple sulfur bacterial sulfur oxidation.","Journal of Molecular Biology","2008","382","692-707","NESG","1yx3"
"1780","18647606","structure","Eryilmaz E, Benach J, Su M, Seetharaman J, Dutta K, Wei H, Gottlieb P, Hunt JF, Ghose R","Structure and dynamics of the P7 protein from the bacteriophage phi 12.","Journal of Molecular Biology","2008","382","402-22","NESG","2q82"
"1654","18589439","structure","Chrencik  JE, Brooun  A, Zhang  H, Mathews  II, Hura  GL, Foster  SA, Perry  JJ, Streiff  M, Ramage  P, Widmer  H, Bokoch  GM, Tainer  JA, Weckbecker  G, Kuhn  P","Structural basis of guanine nucleotide exchange mediated by the T-cell essential Vav1.","Journal of Molecular Biology","2008","380","828-43","ATCG3D","3bji"
"1545","18566914","structure","Nocek B, Bigelow L, Abdullah J, Joachimiak A","Structure of SO2946 orphan from Shewanella oneidensis shows \"jelly-roll\" fold with carbohydrate-binding module","Journal of Structural and Functional Genomics","2008","9","1-6","MCSG","2a5z"
"1548","18554327","structure","Rezácová  P, Kozísek  M, Moy  SF, Sieglová  I, Joachimiak  A, Machius  M, Otwinowski  Z","Crystal structures of the effector-binding domain of repressor Central glycolytic gene Regulator from Bacillus subtilis reveal ligand-induced structural changes upon binding of several glycolytic intermediates.","Molecular Microbiology","2008","69","895-910","MCSG","2okg"
"1719","18547528","structure","Wang X, Weldeghiorghis T, Zhang G, Imperiali B, Prestegard JH","Solution structure of Alg13: the sugar donor subunit of a yeast N-acetylglucosamine transferase.","Structure","2008","16","965-75","NESG","2jzc"
"1649","18547522","structure","Hanson  MA, Cherezov  V, Griffith  MT, Roth  CB, Jaakola  VP, Chien  EY, Velasquez  J, Kuhn  P, Stevens  RC","A specific cholesterol binding site is established by the 2.8 A structure of the human beta2-adrenergic receptor.","Structure","2008","16","897-905","ATCG3D+GPCR","3d4s"
"1928","18537473","structure","Law CJ, Maloney PC, Wang DN","Ins and outs of major facilitator superfamily antiporters.","Annual review of microbiology","2008","62","289-305","NYCOMPS",""
"1596","18502766","structure","Singh S, McCoy JG, Zhang C, Bingman CA, Phillips GN, Thorson JS","Structure and mechanism of the rebeccamycin sugar 4'-O-methyltransferase RebM.","Journal of Biological Chemistry","2008","283","22628-36","CESG","3bus"
"1600","18500352","structure","Newby  ZE, O'Connell  J, Robles-Colmenares  Y, Khademi  S, Miercke  LJ, Stroud  RM","Crystal structure of the aquaglyceroporin PfAQP from the malarial parasite Plasmodium falciparum.","Nature Structural & Molecular Biology","2008","15","619-25","CSMP",""
"1602","18498110","structure","Ragumani  S, Kumaran  D, Burley  SK, Swaminathan  S","Crystal structure of a putative lysostaphin peptidase from Vibrio cholerae.","Proteins","2008","72","1096-103","NYSGXRC","2gu1"
"1530","18482976","structure","Beloglazova N, Brown G, Zimmerman MD, Proudfoot M, Makarova KS, Kudritska M, Kochinyan S, Wang S, Chruszcz M, Minor W, Koonin EV, Edwards AM, Savchenko A, Yakunin AF","A novel family of sequence-specific endoribonucleases associated with the clustered regularly interspaced short palindromic repeats","Journal of Biological Chemistry","2008","283","20361-71","MCSG","2i8e"
"1549","18459799","structure","Brown  G, Singer  A, Proudfoot  M, Skarina  T, Kim  Y, Chang  C, Dementieva  I, Kuznetsova  E, Gonzalez  CF, Joachimiak  A, Savchenko  A, Yakunin  AF","Functional and structural characterization of four glutaminases from Escherichia coli and Bacillus subtilis.","Biochemistry","2008","47","5724-35","MCSG","2osu 1mki"
"1520","18442260","structure","Tyagi R, Eswaramoorthy S, Burley SK, Raushel FM, Swaminathan S","A common catalytic mechanism for proteins of the HutI family.","Biochemistry","2008","47(20)","5608-15","NYSGXRC","2q09"
"1565","18433060","structure","Aceti  DJ, Bitto  E, Yakunin  AF, Proudfoot  M, Bingman  CA, Frederick  RO, Sreenath  HK, Vojtik  FC, Wrobel  RL, Fox  BG, Markley  JL, Phillips  GN","Structural and functional characterization of a novel phosphatase from the Arabidopsis thaliana gene locus At1g05000.","Proteins","2008","73","241-53","CESG","1xri"
"1626","18431750","structure","Aramini  JM, Sharma  S, Huang  YJ, Swapna  GV, Ho  CK, Shetty  K, Cunningham  K, Ma  LC, Zhao  L, Owens  LA, Jiang  M, Xiao  R, Liu  J, Baran  MC, Acton  TB, Rost  B, Montelione  GT","Solution NMR structure of the SOS response protein YnzC from Bacillus subtilis.","Proteins","2008","72","526-30","NESG","2hep 2jvd"
"1509","18369189","structure","McCleverty CJ, Columbus L, Kreusch A, Lesley SA","Structure and ligand binding of the soluble domain of a Thermotoga maritima membrane protein of unknown function TM1634.","Protein Science","2008","17(5)","869-77","JCSG",""
"1540","18367524","structure","Neuman  BW, Joseph  JS, Saikatendu  KS, Serrano  P, Chatterjee  A, Johnson  MA, Liao  L, Klaus  JP, Yates  JR, Wüthrich  K, Stevens  RC, Buchmeier  MJ, Kuhn  P","Proteomics analysis unravels the functional repertoire of coronavirus nonstructural protein 3.","Journal of Virology","2008","82","5279-94","JCSG",""
"1536","18353368","structure","Zimmerman  MD, Proudfoot  M, Yakunin  A, Minor  W","Structural insight into the mechanism of substrate specificity and catalytic activity of an HD-domain phosphohydrolase: the 5'-deoxyribonucleotidase YfbR from Escherichia coli.","Journal of Molecular Biology","2008","378","215-26","MCSG","2paq 1wph"
"1511","18324683","note","Kozbial P, Xu Q, Chiu HJ, McMullan D, Krishna SS, Miller MD, Abdubek P, Acosta C, Astakhova T, Axelrod HL, Carlton D, Clayton T, Deller M, Duan L, Elias Y, Elsliger MA, Feuerhelm J, Grzechnik SK, Hale J, Han GW, Jaroszewski L, Jin KK, Klock HE, Knuth MW, Koesema E, Kumar A, Marciano D, Morse AT, Murphy KD, Nigoghossian E, Okach L, Oommachen S, Reyes R, Rife CL, Spraggon G, Trout CV, van den Bedem H, Weekes D, White A, Wolf G, Zubieta C, Hodgson KO, Wooley J, Deacon AM, Godzik A, Lesley SA, Wilson IA","Crystal structures of MW1337R and lin2004: representatives of a novel protein family that adopt a four-helical bundle fold.","Proteins","2008","71(3)","1589-96","JCSG","2ets 2huj"
"1566","18291103","structure","Cornilescu  CC, Porter  FW, Zhao  KQ, Palmenberg  AC, Markley  JL","NMR structure of the mengovirus Leader protein zinc-finger domain.","FEBS Letters","2008","582","896-900","CESG","2bai"
"1590","18287285","structure","Hayes  PL, Lytle  BL, Volkman  BF, Peterson  FC","The solution structure of ZNF593 from Homo sapiens reveals a zinc finger in a predominantly unstructured protein.","Protein Science","2008","17","571-6","CESG","1zr9"
"1594","18276586","structure","Song  J, Bettendorff  L, Tonelli  M, Markley  JL","Structural basis for the catalytic mechanism of mammalian 25-kDa thiamine triphosphatase.","Journal of Biological Chemistry","2008","283","10939-48","CESG","2jmu"
"1513","18275082","note","Xu Q, Kozbial P, McMullan D, Krishna SS, Brittain SM, Ficarro SB, DiDonato M, Miller MD, Abdubek P, Axelrod HL, Chiu HJ, Clayton T, Duan L, Elsliger MA, Feuerhelm J, Grzechnik SK, Hale J, Han GW, Jaroszewski L, Klock HE, Morse AT, Nigoghossian E, Paulsen J, Reyes R, Rife CL, van den Bedem H, White A, Hodgson KO, Wooley J, Deacon AM, Godzik A, Lesley SA, Wilson IA","Crystal structure of an ADP-ribosylated protein with a cytidine deaminase-like fold, but unknown function (TM1506), from Thermotoga maritima at 2.70 A resolution.","Proteins","2008","71(3)","1546-52","JCSG","1vk9"
"1510","18260100","note","Axelrod HL, McMullan D, Krishna SS, Miller MD, Elsliger MA, Abdubek P, Ambing E, Astakhova T, Carlton D, Chiu HJ, Clayton T, Duan L, Feuerhelm J, Grzechnik SK, Hale J, Han GW, Haugen J, Jaroszewski L, Jin KK, Klock HE, Knuth MW, Koesema E, Morse AT, Nigoghossian E, Okach L, Oommachen S, Paulsen J, Quijano K, Reyes R, Rife CL, van den Bedem H, Weekes D, White A, Wolf G, Xu Q, Hodgson KO, Wooley J, Deacon AM, Godzik A, Lesley SA, Wilson IA","Crystal structure of AICAR transformylase IMP cyclohydrolase (TM1249) from Thermotoga maritima at 1.88 A resolution.","Proteins","2008","71(2)","1042-9","JCSG","1zcz"
"1617","18252724","structure","Forouhar  F, Abashidze  M, Xu  H, Grochowski  LL, Seetharaman  J, Hussain  M, Kuzin  A, Chen  Y, Zhou  W, Xiao  R, Acton  TB, Montelione  GT, Galinier  A, White  RH, Tong  L","Molecular insights into the biosynthesis of the F420 coenzyme.","Journal of Biological Chemistry","2008","283","11832-40","NESG","3c3d 3c3e 3cgw"
"1635","18247350","structure","Singarapu  KK, Xiao  R, Acton  T, Rost  B, Montelione  GT, Szyperski  T","NMR structure of the peptidyl-tRNA hydrolase domain from Pseudomonas syringae expands the structural coverage of the hydrolysis domains of class 1 peptide chain release factors.","Proteins","2008","71","1027-31","NESG","2jva"
"1518","18247349","structure","Agarwal R, Burley SK, Swaminathan S","A novel mode of dimerization via formation of a glutamate anhydride crosslink in a protein crystal structure.","Proteins","2008","71(2)","1038-41","NYSGXRC","1sg9"
"1516","18245086","structure","Agarwal R, Burley SK, Swaminathan S","Structure of human dual specificity protein phosphatase 23, VHZ, enzyme-substrate/product complex.","Journal of Biological Chemistry","2008","283(14)","8946-53","NYSGXRC","2img"
"1593","18230733","structure","Song  J, Guo  LW, Muradov  H, Artemyev  NO, Ruoho  AE, Markley  JL","Intrinsically disordered gamma-subunit of cGMP phosphodiesterase encodes functionally relevant transient secondary and tertiary structure.","Proceedings of the National Academy of Sciences of the United States of America","2008","105","1505-10","CESG","2ju4"
"1628","18218711","structure","Wu  B, Yee  A, Huang  YJ, Ramelot  TA, Cort  JR, Semesi  A, Jung  JW, Lee  W, Montelione  GT, Kennedy  MA, Arrowsmith  CH","The solution structure of ribosomal protein S17E from Methanobacterium thermoautotrophicum: a structural homolog of the FF domain.","Protein Science","2008","17","583-8","NESG","1rq6"
"1710","18218710","structure","Wu B, Lukin J, Yee A, Lemak A, Semesi A, Ramelot TA, Kennedy MA, Arrowsmith CH","Solution structure of ribosomal protein L40E, a unique C4 zinc finger protein encoded by archaeon Sulfolobus solfataricus.","Protein Science","2008","17","589-96","NESG","2ayj"
"1571","18214976","structure","de la Cruz  NB, Peterson  FC, Volkman  BF","Solution structure of At3g28950 from Arabidopsis thaliana.","Proteins","2008","71","546-51","CESG","2jqv"
"1683","18178834","structure","Nelson  CA, Fremont  MD, Sedy  JR, Norris  PS, Ware  CF, Murphy  KM, Fremont  DH","Structural determinants of herpesvirus entry mediator recognition by murine B and T lymphocyte attenuator.","Journal of Immunology","2008","180","940-7","MCSG","1xau"
"1625","18175328","structure","Singarapu  KK, Xiao  R, Sukumaran  DK, Acton  T, Montelione  GT, Szyperski  T","NMR structure of protein Cgl2762 from Corynebacterium glutamicum implicated in DNA transposition reveals a helix-turn-helix motif attached to a flexibly disordered leucine zipper.","Proteins","2008","70","1650-4","NESG","2jn6"
"1603","18175317","structure","Madegowda  M, Eswaramoorthy  S, Burley  SK, Swaminathan  S","X-ray crystal structure of the B component of Hemolysin BL from Bacillus cereus.","Proteins","2008","71","534-40","NYSGXRC","2nrj"
"1497","18175314","structure","Qiu  Y, Zhang  R, Binkowski  TA, Tereshko  V, Joachimiak  A, Kossiakoff  A","The 1.38 A crystal structure of DmsD protein from Salmonella typhimurium, a proofreading chaperone on the Tat pathway.","Proteins","2008","71","525-33","MCSG","1s9u"
"1501","18171624","structure","Tan  K, Li  H, Zhang  R, Gu  M, Clancy  ST, Joachimiak  A","Structures of open (R) and close (T) states of prephenate dehydratase (PDT)--implication of allosteric regulation by L-phenylalanine.","Journal of Structural Biology","2008","162","94-107","MCSG","2qmw 2iq8"
"1493","18021800","structure","Proudfoot M, Sanders SA, Singer A, Zhang R, Brown G, Binkowski A, Xu L, Lukin JA, Murzin AG, Joachimiak A, Arrowsmith CH, Edwards AM, Savchenko AV, Yakunin AF","Biochemical and structural characterization of a novel family of cystathionine beta-synthase domain proteins fused to a Zn ribbon-like domain","Journal of Molecular Biology","2008","375(1)","301-15","MCSG","1pvm 2qh1"
"1512","18004772","note","Mathews II, McMullan D, Miller MD, Canaves JM, Elsliger MA, Floyd R, Grzechnik SK, Jaroszewski L, Klock HE, Koesema E, Kovarik JS, Kreusch A, Kuhn P, McPhillips TM, Morse AT, Quijano K, Rife CL, Schwarzenbacher R, Spraggon G, Stevens RC, van den Bedem H, Weekes D, Wolf G, Hodgson KO, Wooley J, Deacon AM, Godzik A, Lesley SA, Wilson IA","Crystal structure of 2-keto-3-deoxygluconate kinase (TM0067) from Thermotoga maritima at 2.05 A resolution.","Proteins","2008","70(2)","603-8","JCSG","2afb"
"1469","18001769","structure","Lee  JE, Bae  E, Bingman  CA, Phillips  GN, Raines  RT","Structural basis for catalysis by onconase.","Journal of Molecular Biology","2008","375","165-77","CESG","2gmk 2i5s"
"1569","17932939","structure","Bae  E, Bingman  CA, Aceti  DJ, Phillips  GN","Crystal structure of Homo sapiens protein LOC79017.","Proteins","2008","70","588-91","CESG","2i5t"
"1519","17910070","structure","Rao KN, Burley SK, Swaminathan S","Crystal structure of a conserved protein of unknown function (MJ1651) from Methanococcus jannaschii.","Proteins","2008","70(2)","572-7","NYSGXRC","2f4n"
"1640","17886275","structure","Bae  E, Bingman  CA, Bitto  E, Aceti  DJ, Phillips  GN","Crystal structure of Arabidopsis thaliana cytokinin dehydrogenase.","Proteins","2008","70","303-6","CESG","2exr"
"1491","17876832","structure","Nocek B, Mulligan R, Bargassa M, Collart F, Joachimiak A","Crystal structure of aminopeptidase N from human pathogen Neisseria meningitidis.","Proteins","2008","70(1)","273-9","MCSG","2gtq"
"1589","17876823","structure","Bitto  E, Huang  Y, Bingman  CA, Singh  S, Thorson  JS, Phillips  GN","The structure of flavin-dependent tryptophan 7-halogenase RebH.","Proteins","2008","70","289-93","CESG","2o9z 2oa1"
"537","17705269","structure","Rezácová P, Borek D, Moy SF, Joachimiak A, Otwinowski Z","Crystal structure and putative function of small Toprim domain-containing protein from Bacillus stearothermophilus","Proteins","2008","70(2)","311-9","MCSG","2i5r 2fcj"
"542","17634982","structure","Bitto E, Bingman CA, Kondrashov DA, McCoy JG, Bannen RM, Wesenberg GE, Phillips GN","Structure and dynamics of gamma-SNAP: insight into flexibility of proteins from the SNAP family.","Proteins","2008","70(1)","93-104","CESG","2ifu"
"1543","19636862","note","Chatterjee A, Johnson MA, Serrano P, Pedrini B, Wüthrich K","NMR assignment of the domain 513-651 from the SARS-CoV nonstructural protein nsp3.","Biomolecular NMR Assignments","2007","1","191-4","JCSG","2rnk 2jzf"
"1672","18084074","structure","Cooper  DR, Surendranath  Y, Devedjiev  Y, Bielnicki  J, Derewenda  ZS","Structure of the Bacillus subtilis OhrB hydroperoxide-resistance protein in a fully oxidized state.","Acta Crystallographica Section D: Biological Crystallography","2007","63","1269-73","ISFI","2bjo"
"1515","18058037","structure","Almo SC, Bonanno JB, Sauder JM, Emtage S, Dilorenzo TP, Malashkevich V, Wasserman SR, Swaminathan S, Eswaramoorthy S, Agarwal R, Kumaran D, Madegowda M, Ragumani S, Patskovsky Y, Alvarado J, Ramagopal UA, Faber-Barata J, Chance MR, Sali A, Fiser A, Zhang ZY, Lawrence DS, Burley SK","Structural genomics of protein phosphatases.","Journal of Structural and Functional Genomics","2007","8(2-3)","121-40","NYSGXRC","2fh7"
"1778","18034161","structure","Benach J, Swaminathan SS, Tamayo R, Handelman SK, Folta-Stogniew E, Ramos JE, Forouhar F, Neely H, Seetharaman J, Camilli A, Hunt JF","The structural basis of cyclic diguanylate signal transduction by PilZ domains.","EMBO Journal","2007","26","5153-66","NESG","1ywu 1yln 2gjg 1w25"
"1715","17976651","structure","Savchenko A, Proudfoot M, Skarina T, Singer A, Litvinova O, Sanishvili R, Brown G, Chirgadze N, Yakunin AF","Molecular basis of the antimutagenic activity of the house-cleaning inosine triphosphate pyrophosphatase RdgB from Escherichia coli.","Journal of Molecular Biology","2007","374","1091-103","MCSG","1k7k"
"472","17974509","structure","Varga  K, Tian  L, McDermott  AE","Solid-state NMR study and assignments of the KcsA potassium ion channel of S. lividans.","Biochimica et biophysica acta","2007","1774","1604-13","NYCOMPS","null"
"1492","17968677","structure","Petrova T, Cuff ME, Wu R, Kim Y, Holzle D, Joachimiak A","Novel hexamerization motif is discovered in a conserved cytoplasmic protein from Salmonella typhimurium.","Journal of Structural and Functional Genomics","2007","8(1)","19-25","MCSG","2gk3"
"1586","17965015","structure","Bianchetti  CM, Yi  L, Ragsdale  SW, Phillips  GN","Comparison of apo- and heme-bound crystal structures of a truncated human heme oxygenase-2.","Journal of Biological Chemistry","2007","282","37624-31","CESG","2q32"
"1653","17962520","structure","Cherezov  V, Rosenbaum  DM, Hanson  MA, Rasmussen  SG, Thian  FS, Kobilka  TS, Choi  HJ, Kuhn  P, Weis  WI, Kobilka  BK, Stevens  RC","High-resolution crystal structure of an engineered human beta2-adrenergic G protein-coupled receptor.","Science","2007","318","1258-65","ATCG3D+GPCR","2rh1"
"1502","17962405","structure","Vorontsov II, Minasov G, Brunzelle JS, Shuvalova L, Kiryukhina O, Collart FR, Anderson WF","Crystal structure of an apo form of Shigella flexneri ArsH protein with an NADPH-dependent FMN reductase activity","Protein Science","2007","16(11)","2483-90","MCSG","2fzv"
"1585","17920629","structure","Aranda  R, Worley  CE, Liu  M, Bitto  E, Cates  MS, Olson  JS, Lei  B, Phillips  GN","Bis-methionyl coordination in the crystal structure of the heme-binding domain of the streptococcal cell surface protein Shp.","Journal of Molecular Biology","2007","374","374-83","CESG","2q7a"
"1521","17908300","structure","Tyagi R, Burley SK, Swaminathan S","X-ray structures of two proteins belonging to Pfam DUF178 revealed unexpected structural similarity to the DUF191 Pfam family.","BMC Structural Biology","2007","7(6)","62","NYSGXRC","2i6e"
"1648","17897949","structure","Chrencik  JE, Brooun  A, Recht  MI, Nicola  G, Davis  LK, Abagyan  R, Widmer  H, Pasquale  EB, Kuhn  P","Three-dimensional structure of the EphB2 receptor in complex with an antagonistic peptide reveals a novel mode of inhibition.","Journal of Biological Chemistry","2007","282","36505-13","ATCG3D","2qbx"
"1470","17850745","structure","Chiu PL, Pagel M, Evans J, Chou HT, Zeng X, Gipson B, Stahlberg H, Nimigean C","The structure of the prokaryotic cyclic nucleotide-modulated potassium channel MloK1 at 16? resolution","Structure","2007","15","1053-1064","CSMP",""
"1576","17786587","structure","Phillips  GN, Fox  BG, Markley  JL, Volkman  BF, Bae  E, Bitto  E, Bingman  CA, Frederick  RO, McCoy  JG, Lytle  BL, Pierce  BS, Song  J, Twigger  SN","Structures of proteins of biomedical interest from the Center for Eukaryotic Structural Genomics.","Journal of Structural and Functional Genomics","2007","8","73-84","CESG",""
"1670","17768339","structure","Larson  SB, Day  JS, Cudney  R, McPherson  A","A new crystal form of bovine pancreatic RNase A in complex with 2'-deoxyguanosine-5'-monophosphate.","Acta Crystallographica Section F: Structural Biology and Crystallization Communications","2007","63","728-33","CHTSB","2qca"
"1514","17728234","structure","Serrano P, Johnson MA, Almeida MS, Horst R, Herrmann T, Joseph JS, Neuman BW, Subramanian V, Saikatendu KS, Buchmeier MJ, Stevens RC, Kuhn P, Wüthrich K","Nuclear magnetic resonance structure of the N-terminal domain of nonstructural protein 3 from the severe acute respiratory syndrome coronavirus.","Journal of Virology","2007","81(21)","12049-60","JCSG","2gri 2idy"
"532","17705272","structure","Rezáčová P, Krejčiříková V, Borek D, Moy SF, Joachimiak A, Otwinowski Z","The crystal structure of the effector-binding domain of the trehalose repressor TreR from Bacillus subtilis 168 reveals a unique quarternary assembly.","Proteins","2007","69(3)","679-82","MCSG","2ogg"
"1624","17699518","structure","Benach  J, Wang  L, Chen  Y, Ho  CK, Lee  S, Seetharaman  J, Xiao  R, Acton  TB, Montelione  GT, Deng  H, Sun  R, Tong  L","Structural and functional studies of the abundant tegument protein ORF52 from murine gammaherpesvirus 68.","Journal of Biological Chemistry","2007","282","31534-41","NESG","2oa5"
"576","17696316","structure","Borovinskaya MA, Shoji S, Holton JM, Fredrick K, Cate JH","A steric block in translation caused by the antibiotic spectinomycin.","ACS Chemical Biology","2007","2(8)","545-52","CSMP",""
"501","17690258","structure","Zhou Z, Zhen J, Karpowich NK, Goetz RM, Law CJ, Reith ME, Wang DN","LeuT-desipramine structure reveals how antidepressants block neurotransmitter reuptake.","Science","2007","317(5843)","1390-3","NYCOMPS","2qju"
"531","17669425","structure","Nocek B, Evdokimova E, Proudfoot M, Kudritska M, Grochowski LL, White RH, Savchenko A, Yakunin AF, Edwards A, Joachimiak A","Structure of an amide bond forming F(420):gamma-glutamyl ligase from Archaeoglobus fulgidus -- a member of a new family of non-ribosomal peptide synthases","Journal of Molecular Biology","2007","372(2)","456-69","MCSG","2g9i 2phn"
"565","17660832","structure","Borovinskaya MA, Pai RD, Zhang W, Schuwirth BS, Holton JM, Hirokawa G, Kaji H, Kaji A, Cate JH","Structural basis for aminoglycoside inhibition of bacterial ribosome recycling.","Nature Structural & Molecular Biology","2007","14(8)","727-32","CSMP",""
"291","17656578","structure","Huang S, Romanchuk G, Pattridge K, Lesley SA, Wilson IA, Matthews RG, Ludwig M","Reactivation of methionine synthase from Thermotoga maritima (TM0268) requires the downstream gene product TM0269.","Protein Science","2007","16(8)","1588-95","JCSG",""
"582","17654724","note","Xu Q, Saikatendu KS, Krishna SS, McMullan D, Abdubek P, Agarwalla S, Ambing E, Astakhova T, Axelrod HL, Carlton D, Chiu HJ, Clayton T, DiDonato M, Duan L, Elsliger MA, Feuerhelm J, Grzechnik SK, Hale J, Hampton E, Han GW, Haugen J, Jaroszewski L, Jin KK, Klock HE, Knuth MW, Koesema E, Miller MD, Morse AT, Nigoghossian E, Okach L, Oommachen S, Paulsen J, Reyes R, Rife CL, Schwarzenbacher R, van den Bedem H, White A, Wolf G, Hodgson KO, Wooley J, Deacon AM, Godzik A, Lesley SA, Wilson IA","Crystal structure of MtnX phosphatase from Bacillus subtilis at 2.0 A resolution provides a structural basis for bipartite phosphomonoester hydrolysis of 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate.","Proteins","2007","69(2)","433-9","JCSG","2fea"
"579","17654547","structure","Zubieta C, Joseph R, Krishna SS, McMullan D, Kapoor M, Axelrod HL, Miller MD, Abdubek P, Acosta C, Astakhova T, Carlton D, Chiu HJ, Clayton T, Deller MC, Duan L, Elias Y, Elsliger MA, Feuerhelm J, Grzechnik SK, Hale J, Han GW, Jaroszewski L, Jin KK, Klock HE, Knuth MW, Kozbial P, Kumar A, Marciano D, Morse AT, Murphy KD, Nigoghossian E, Okach L, Oommachen S, Reyes R, Rife CL, Schimmel P, Trout CV, van den Bedem H, Weekes D, White A, Xu Q, Hodgson KO, Wooley J, Deacon AM, Godzik A, Lesley SA, Wilson IA","Identification and structural characterization of heme binding in a novel dye-decolorizing peroxidase, TyrA.","Proteins","2007","69(2)","234-43","JCSG","2iiz"
"580","17654545","structure","Zubieta C, Krishna SS, Kapoor M, Kozbial P, McMullan D, Axelrod HL, Miller MD, Abdubek P, Ambing E, Astakhova T, Carlton D, Chiu HJ, Clayton T, Deller MC, Duan L, Elsliger MA, Feuerhelm J, Grzechnik SK, Hale J, Hampton E, Han GW, Jaroszewski L, Jin KK, Klock HE, Knuth MW, Kumar A, Marciano D, Morse AT, Nigoghossian E, Okach L, Oommachen S, Reyes R, Rife CL, Schimmel P, van den Bedem H, Weekes D, White A, Xu Q, Hodgson KO, Wooley J, Deacon AM, Godzik A, Lesley SA, Wilson IA","Crystal structures of two novel dye-decolorizing peroxidases reveal a beta-barrel fold with a conserved heme-binding motif.","Proteins","2007","69(2)","223-33","JCSG","2gvk 2hag"
"605","17652169","structure","Forrest LR, Tavoulari S, Zhang YW, Rudnick G, Honig B","Identification of a chloride ion binding site in Na+/Cl -dependent transporters.","Proceedings of the National Academy of Sciences of the United States of America","2007","104(31)","12761-6","NYCOMPS",""
"517","17640072","structure","Tyagi R, Kumaran D, Burley SK, Swaminathan S","X-ray structure of imidazolonepropionase from Agrobacterium tumefaciens at 1.87 A resolution.","Proteins","2007","69(3)","652-8","NYSGXRC","2puz"
"581","17636569","note","Krishna SS, Tautz L, Xu Q, McMullan D, Miller MD, Abdubek P, Ambing E, Astakhova T, Axelrod HL, Carlton D, Chiu HJ, Clayton T, DiDonato M, Duan L, Elsliger MA, Grzechnik SK, Hale J, Hampton E, Han GW, Haugen J, Jaroszewski L, Jin KK, Klock HE, Knuth MW, Koesema E, Morse AT, Mustelin T, Nigoghossian E, Oommachen S, Reyes R, Rife CL, van den Bedem H, Weekes D, White A, Hodgson KO, Wooley J, Deacon AM, Godzik A, Lesley SA, Wilson IA","Crystal structure of NMA1982 from Neisseria meningitidis at 1.5 A resolution provides a structural scaffold for nonclassical, eukaryotic-like phosphatases.","Proteins","2007","69(2)","415-21","JCSG","2f46"
"564","17632523","structure","Shaw N, Zhao M, Cheng C, Xu H, Saarikettu J, Li Y, Da Y, Yao Z, Silvennoinen O, Yang J, Liu ZJ, Wang BC, Rao Z","The multifunctional human p100 protein 'hooks' methylated ligands","Nature Structural & Molecular Biology","2007","14(8)","779-84","SECSG",""
"562","17628590","structure","Bosch J, Turley S, Roach CM, Daly TM, Bergman LW, Hol WG","The closed MTIP-myosin A-tail complex from the malaria parasite invasion machinery.","Journal of Molecular Biology","2007","372(1)","77-88","SGPP",""
"536","17623843","structure","Cuff ME, Li H, Moy S, Watson J, Cipriani A, Joachimiak A","Crystal structure of an acetyltransferase protein from Vibrio cholerae strain N16961.","Proteins","2007","69(2)","422-7","MCSG","2fck"
"560","17620707","structure","Kelley LL, Dillard BD, Tempel W, Chen L, Shaw N, Lee D, Newton MG, Sugar FJ, Jenney FE, Lee HS, Shah C, Poole FL, Adams MW, Richardson JS, Richardson DC, Liu ZJ, Wang BC, Rose J","Structure of the hypothetical protein PF0899 from Pyrococcus furiosus at 1.85 A resolution.","Acta Crystallographica Section F: Structural Biology and Crystallization Communications","2007","63(Pt 7)","549-52","SECSG",""
"554","17609801","structure","Chernyshev A, Fleischmann T, Koehn EM, Lesley SA, Kohen A","The relationships between oxidase and synthase activities of flavin dependent thymidylate synthase (FDTS).","Chemical Communications","2007","53","2861-3","JCSG",""
"519","17603473","structure","Hermann JC, Marti-Arbona R, Fedorov AA, Fedorov E, Almo SC, Shoichet BK, Raushel FM","Structure-based activity prediction for an enzyme of unknown function.","Nature","2007","448(7155)","775-9","NYSGXRC","2plm"
"530","17588774","structure","Koclega KD, Chruszcz M, Zimmerman MD, Cymborowski M, Evdokimova E, Minor W","Crystal structure of a transcriptional regulator TM1030 from Thermotoga maritima solved by an unusual MAD experiment.","Journal of Structural Biology","2007","159(3)","424-32","MCSG","1z77"
"390","17588214","structure","Forouhar  F, Kuzin  A, Seetharaman  J, Lee  I, Zhou  W, Abashidze  M, Chen  Y, Yong  W, Janjua  H, Fang  Y, Wang  D, Cunningham  K, Xiao  R, Acton  TB, Pichersky  E, Klessig  DF, Porter  CW, Montelione  GT, Tong  L","Functional insights from structural genomics.","Journal of Structural and Functional Genomics","2007","8","37-44","NESG","1rty 1sqs 1tm0 1z6p 2hd3 2nv4 2oys"
"525","17586771","structure","Petkowski JJ, Chruszcz M, Zimmerman MD, Zheng H, Skarina T, Onopriyenko O, Cymborowski MT, Koclega KD, Savchenko A, Edwards A, Minor W","Crystal structures of TM0549 and NE1324--two orthologs of E. coli AHAS isozyme III small regulatory subunit","Protein Science","2007","16(7)","1360-7","MCSG","2fgc 2pc6"
"528","17586767","structure","Godsey MH, Minasov G, Shuvalova L, Brunzelle JS, Vorontsov II, Collart FR, Anderson WF","The 2.2 A resolution crystal structure of Bacillus cereus Nif3-family protein YqfO reveals a conserved dimetal-binding motif and a regulatory domain.","Protein Science","2007","16(7)","1285-93","MCSG","2gx8"
"568","17567738","structure","de la Cruz NB, Peterson FC, Lytle BL, Volkman BF","Solution structure of a membrane-anchored ubiquitin-fold (MUB) protein from Homo sapiens.","Protein Science","2007","16(7)","1479-84","CESG","2gow"
"584","17546672","note","Zubieta C, Krishna SS, McMullan D, Miller MD, Abdubek P, Agarwalla S, Ambing E, Astakhova T, Axelrod HL, Carlton D, Chiu HJ, Clayton T, Deller M, DiDonato M, Duan L, Elsliger MA, Grzechnik SK, Hale J, Hampton E, Han GW, Haugen J, Jaroszewski L, Jin KK, Klock HE, Knuth MW, Koesema E, Kumar A, Marciano D, Morse AT, Nigoghossian E, Oommachen S, Reyes R, Rife CL, van den Bedem H, Weekes D, White A, Xu Q, Hodgson KO, Wooley J, Deacon AM, Godzik A, Lesley SA, Wilson IA","Crystal structure of homoserine O-succinyltransferase from Bacillus cereus at 2.4 A resolution.","Proteins","2007","68(4)","999-1005","JCSG","2ghr"
"1684","17545669","structure","Maresso  AW, Wu  R, Kern  JW, Zhang  R, Janik  D, Missiakas  DM, Duban  ME, Joachimiak  A, Schneewind  O","Activation of inhibitors by sortase triggers irreversible modification of the active site.","Journal of Biological Chemistry","2007","282","23129-39","MCSG","2oqw"
"550","17545282","structure","Cacciapuoti G, Porcelli M, Moretti MA, Sorrentino F, Concilio L, Zappia V, Liu ZJ, Tempel W, Schubot F, Rose JP, Wang BC, Brereton PS, Jenney FE, Adams MW","The first agmatine/cadaverine aminopropyl transferase: biochemical and structural characterization of an enzyme involved in polyamine biosynthesis in the hyperthermophilic archaeon Pyrococcus furiosus.","Journal of Bacteriology","2007","189(16)","6057-67","SECSG",""
"514","17523190","note","Aramini JM, Huang YJ, Swapna GV, Cort JR, Rajan PK, Xiao R, Shastry R, Acton TB, Liu J, Rost B, Kennedy MA, Montelione GT","Solution NMR structure of Escherichia coli ytfP expands the structural coverage of the UPF0131 protein domain family.","Proteins","2007","68(3)","789-95","NESG","1xhs"
"558","17512409","structure","Shimada A, Niwa H, Tsujita K, Suetsugu S, Nitta K, Hanawa-Suetsugu K, Akasaka R, Nishino Y, Toyama M, Chen L, Liu ZJ, Wang BC, Yamamoto M, Terada T, Miyazawa A, Tanaka A, Sugano S, Shirouzu M, Nagayama K, Takenawa T, Yokoyama S","Curved EFC/F-BAR-domain dimers are joined end to end into a filament for membrane invagination in endocytosis.","Cell","2007","129(4)","761-72","SECSG",""
"507","17475623","structure","Yin C, Khan JA, Swapna GV, Ertekin A, Krug RM, Tong L, Montelione GT","Conserved surface features form the double-stranded RNA binding site of non-structural protein 1 (NS1) from influenza A and B viruses.","Journal of Biological Chemistry","2007","282(28)","20584-92","NESG","1xeq 1ns1"
"557","17466622","structure","Hur S, Stroud RM","How U38, 39, and 40 of many tRNAs become the targets for pseudouridylation by TruA.","Molecular Cell","2007","26(2)","189-203","CSMP",""
"1783","17465726","structure","Khan JA, Forouhar F, Tao X, Tong L","Nicotinamide adenine dinucleotide metabolism as an attractive target for drug discovery.","Expert opinion on therapeutic targets","2007","11","695-705","NESG","2ql6 2qg6"
"578","17444523","note","Premkumar L, Rife CL, Sri Krishna S, McMullan D, Miller MD, Abdubek P, Ambing E, Astakhova T, Axelrod HL, Canaves JM, Carlton D, Chiu HJ, Clayton T, DiDonato M, Duan L, Elsliger MA, Feuerhelm J, Floyd R, Grzechnik SK, Hale J, Hampton E, Han GW, Haugen J, Jaroszewski L, Jin KK, Klock HE, Knuth MW, Koesema E, Kovarik JS, Kreusch A, Levin I, McPhillips TM, Morse AT, Nigoghossian E, Okach L, Oommachen S, Paulsen J, Quijano K, Reyes R, Rezezadeh F, Rodionov D, Schwarzenbacher R, Spraggon G, van den Bedem H, White A, Wolf G, Xu Q, Hodgson KO, Wooley J, Deacon AM, Godzik A, Lesley SA, Wilson IA","Crystal structure of TM1030 from Thermotoga maritima at 2.3 A resolution reveals molecular details of its transcription repressor function.","Proteins","2007","68(1)","418-24","JCSG","1zkg"
"353","17437721","structure","Grundner C, Perrin D, Hooft van Huijsduijnen R, Swinnen D, Gonzalez J, Gee CL, Wells TN, Alber T","Structural basis for selective inhibition of Mycobacterium tuberculosis protein tyrosine phosphatase PtpB.","Structure","2007","15(4)","499-509","TB",""
"526","17437714","structure","Zuo Y, Zheng H, Wang Y, Chruszcz M, Cymborowski M, Skarina T, Savchenko A, Malhotra A, Minor W","Crystal structure of RNase T, an exoribonuclease involved in tRNA maturation and end turnover.","Structure","2007","15(4)","417-28","MCSG","2f96"
"559","17400918","structure","Song J, Zhao KQ, Newman CL, Vinarov DA, Markley JL","Solution structure of human sorting nexin 22.","Protein Science","2007","16(5)","807-14","CESG","2ett"
"388","17379709","structure","Velge P, Herler M, Johansson J, Roche SM, Témoin S, Fedorov AA, Gracieux P, Almo SC, Goebel W, Cossart P","A naturally occurring mutation K220T in the pleiotropic activator PrfA of Listeria monocytogenes results in a loss of virulence due to decreasing DNA-binding affinity.","Microbiology","2007","153(Pt 4)","995-1005","NYSGXRC","1omi"
"521","17362992","structure","Agarwal R, Burley SK, Swaminathan S","Structural analysis of a ternary complex of allantoate amidohydrolase from Escherichia coli reveals its mechanics.","Journal of Molecular Biology","2007","368(2)","450-63","NYSGXRC","1z2l"
"567","17350650","structure","Johnson RJ, McCoy JG, Bingman CA, Phillips GN, Raines RT","Inhibition of human pancreatic ribonuclease by the human ribonuclease inhibitor protein.","Journal of Molecular Biology","2007","368(2)","434-49","CESG","1z7x"
"574","17346231","structure","Song J, Markley JL","Cautionary tail: the presence of an N-terminal tag on dynein light-chain Roadblock/LC7 affects its interaction with a functional partner.","Protein and Peptide Letters","2007","14(3)","265-8","CESG","1y4o"
"563","17329808","structure","Arakaki T, Neely H, Boni E, Mueller N, Buckner FS, Van Voorhis WC, Lauricella A, DeTitta G, Luft J, Hol WG, Merritt EA","The structure of Plasmodium vivax phosphatidylethanolamine-binding protein suggests a functional motif containing a left-handed helix.","Acta Crystallographica Section F: Structural Biology and Crystallization Communications","2007","63(Pt 3)","178-82","SGPP","2gzq"
"556","17329207","structure","Howard RJ, Clark KA, Holton JM, Minor DL","Structural insight into KCNQ (Kv7) channel assembly and channelopathy.","Neuron","2007","53(5)","663-75","CSMP",""
"527","17327672","structure","Kirillova O, Chruszcz M, Shumilin IA, Skarina T, Gorodichtchenskaia E, Cymborowski M, Savchenko A, Edwards A, Minor W","An extremely SAD case: structure of a putative redox-enzyme maturation protein from Archaeoglobus fulgidus at 3.4 A resolution.","Acta Crystallographica Section D: Biological Crystallography","2007","63(Pt 3)","348-54","MCSG","2o9x 1ze0"
"540","17322537","structure","Sieminska EA, Xu X, Savchenko A, Sanders DA","The X-ray crystal structure of PA1607 from Pseudomonas aureginosa at 1.9 A resolution--a putative transcription factor.","Protein Science","2007","16(3)","543-9","MCSG","2f2e"
"504","17322535","note","Vorobiev SM, Neely H, Seetharaman J, Ma LC, Xiao R, Acton TB, Montelione GT, Tong L","Crystal structure of AGR_C_4470p from Agrobacterium tumefaciens.","Protein Science","2007","16(3)","535-8","NESG","2hqv"
"573","17320109","structure","Bae E, Reiter NJ, Bingman CA, Kwan SS, Lee D, Phillips GN, Butcher SE, Brow DA","Structure and interactions of the first three RNA recognition motifs of splicing factor prp24.","Journal of Molecular Biology","2007","367(5)","1447-58","CESG","2ghp"
"509","17298945","structure","Kaustov L, Lukin J, Lemak A, Duan S, Ho M, Doherty R, Penn LZ, Arrowsmith CH","The conserved CPH domains of Cul7 and PARC are protein-protein interaction modules that bind the tetramerization domain of p53.","Journal of Biological Chemistry","2007","282(15)","11300-7","NESG","2jng"
"518","17266124","note","Singarapu KK, Liu G, Xiao R, Bertonati C, Honig B, Montelione GT, Szyperski T","NMR structure of protein yjbR from Escherichia coli reveals 'double-wing' DNA binding motif","Proteins","2007","67(2)","501-4","NESG","2fki"
"583","17256761","note","Weekes D, Miller MD, Krishna SS, McMullan D, McPhillips TM, Acosta C, Canaves JM, Elsliger MA, Floyd R, Grzechnik SK, Jaroszewski L, Klock HE, Koesema E, Kovarik JS, Kreusch A, Morse AT, Quijano K, Spraggon G, van den Bedem H, Wolf G, Hodgson KO, Wooley J, Deacon AM, Godzik A, Lesley SA, Wilson IA","Crystal structure of a transcription regulator (TM1602) from Thermotoga maritima at 2.3 A resolution.","Proteins","2007","67(1)","247-52","JCSG","1j5y"
"553","17242516","structure","Kondo N, Nakagawa N, Ebihara A, Chen L, Liu ZJ, Wang BC, Yokoyama S, Kuramitsu S, Masui R","Structure of dNTP-inducible dNTP triphosphohydrolase: insight into broad specificity for dNTPs and triphosphohydrolase-type hydrolysis.","Acta Crystallographica Section D: Biological Crystallography","2007","63(Pt 2)","230-9","SECSG","2dqb"
"548","17239847","structure","Runge KE, Evans JE, He ZY, Gupta S, McDonald KL, Stahlberg H, Primakoff P, Myles DG","Oocyte CD9 is enriched on the microvillar membrane and required for normal microvillar shape and distribution.","Developmental Biology","2007","304(1)","317-25","CSMP",""
"508","17223696","structure","Wang X, Lee HS, Sugar FJ, Jenney FE, Adams MW, Prestegard JH","PF0610, a novel winged helix-turn-helix variant possessing a rubredoxin-like Zn ribbon motif from the hyperthermophilic archaeon, Pyrococcus furiosus.","Biochemistry","2007","46(3)","752-61","NESG","2gmg"
"575","17220875","structure","Huang DT, Hunt HW, Zhuang M, Ohi MD, Holton JM, Schulman BA","Basis for a ubiquitin-like protein thioester switch toggling E1-E2 affinity.","Nature","2007","445(7126)","394-8","CSMP",""
"547","17211893","structure","Das A, Fu ZQ, Tempel W, Liu ZJ, Chang J, Chen L, Lee D, Zhou W, Xu H, Shaw N, Rose JP, Ljungdahl LG, Wang BC","Characterization of a corrinoid protein involved in the C1 metabolism of strict anaerobic bacterium Moorella thermoacetica.","Proteins","2007","67(1)","167-76","SECSG",""
"566","17202208","structure","Almeida MS, Johnson MA, Herrmann T, Geralt M, Wüthrich K","Novel beta-barrel fold in the nuclear magnetic resonance structure of the replicase nonstructural protein 1 from the severe acute respiratory syndrome coronavirus.","Journal of Virology","2007","81(7)","3151-61","JCSG","2hsx"
"510","17197414","structure","Forouhar F, Anderson JL, Mowat CG, Vorobiev SM, Hussain A, Abashidze M, Bruckmann C, Thackray SJ, Seetharaman J, Tucker T, Xiao R, Ma LC, Zhao L, Acton TB, Montelione GT, Chapman SK, Tong L","Molecular insights into substrate recognition and catalysis by tryptophan 2,3-dioxygenase.","Proceedings of the National Academy of Sciences of the United States of America","2007","104(2)","473-8","NESG","2nwb 2nw7 2nw8 2nw9"
"569","17194761","structure","Bitto E, Bingman CA, Wesenberg GE, McCoy JG, Phillips GN","Structure of aspartoacylase, the brain enzyme impaired in Canavan disease.","Proceedings of the National Academy of Sciences of the United States of America","2007","104(2)","456-61","CESG","2gu2 2i3c"
"572","17190799","structure","Gruswitz F, O'Connell J 3rd, Stroud RM","Inhibitory complex of the transmembrane ammonia channel, AmtB, and the cytosolic regulatory protein, GlnK, at 1.96 A.","Proceedings of the National Academy of Sciences of the United States of America","2007","104(1)","42-7","CSMP",""
"533","17189261","structure","Lesnyak DV, Osipiuk J, Skarina T, Sergiev PV, Bogdanov AA, Edwards A, Savchenko A, Joachimiak A, Dontsova OA","Methyltransferase that modifies guanine 966 of the 16 S rRNA: functional identification and tertiary structure","Journal of Biological Chemistry","2007","282(8)","5880-7","MCSG","2fpo"
"551","17183168","structure","Kanaujia SP, Ranjani CV, Jeyakanthan J, Baba S, Chen L, Liu ZJ, Wang BC, Nishida M, Ebihara A, Shinkai A, Kuramitsu S, Shiro Y, Sekar K, Yokoyama S","Crystallization and preliminary crystallographic analysis of molybdenum-cofactor biosynthesis protein C from Thermus thermophilus.","Acta Crystallographica Section F: Structural Biology and Crystallization Communications","2007","63(Pt 1)","27-9","SECSG",""
"577","17178129","structure","McCoy JG, Bitto E, Bingman CA, Wesenberg GE, Bannen RM, Kondrashov DA, Phillips GN","Structure and dynamics of UDP-glucose pyrophosphorylase from Arabidopsis thaliana with bound UDP-glucose and UTP.","Journal of Molecular Biology","2007","366(3)","830-41","CESG","1z90 2icx 2icy"
"570","17166513","structure","Song J, Markley JL","Three-dimensional structure determined for a subunit of human tRNA splicing endonuclease (Sen15) reveals a novel dimeric fold.","Journal of Molecular Biology","2007","366(1)","155-64","CESG","2gw6"
"387","17161423","structure","Jefferson JJ, Ciatto C, Shapiro L, Liem RK","Structural analysis of the plakin domain of bullous pemphigoid antigen1 (BPAG1) suggests that plakins are members of the spectrin superfamily.","Journal of Molecular Biology","2007","366(1)","244-57","NYSGXRC","2iak"
"555","17123960","structure","Cornilescu G, Hadley EB, Woll MG, Markley JL, Gellman SH, Cornilescu CC","Solution structure of a small protein containing a fluorinated side chain in the core.","Protein Science","2007","16(1)","14-9","CESG","2jm0"
"549","17123542","structure","Di Luccio E, Petschacher B, Voegtli J, Chou HT, Stahlberg H, Nidetzky B, Wilson DK","Structural and kinetic studies of induced fit in xylulose kinase from Escherichia coli.","Journal of Molecular Biology","2007","365(3)","783-98","CSMP",""
"515","17096419","note","Ramelot TA, Yee A, Cort JR, Semesi A, Arrowsmith CH, Kennedy MA","NMR structure and binding studies confirm that PA4608 from Pseudomonas aeruginosa is a PilZ domain and a c-di-GMP binding protein.","Proteins","2007","66(2)","266-71","NESG","1ywu"
"552","17064730","structure","Goulding CW, Bowers PM, Segelke B, Lekin T, Kim CY, Terwilliger TC, Eisenberg D","The structure and computational analysis of Mycobacterium tuberculosis protein CitE suggest a novel enzymatic function.","Journal of Molecular Biology","2007","365(2)","275-83","ISFI","1z6k"
"763","17342453","structure","Hiyama TB, Zhao M, Kitago Y, Yao M, Sekine S, Terada T, Kuroishi C, Liu ZJ, Rose JP, Kuramitsu S, Shirouzu M, Watanabe N, Yokoyama S, Tanaka I, Wang BC","Structural basis of CoA recognition by the Pyrococcus single-domain CoA-binding proteins.","Journal of Structural and Functional Genomics","2006","7(3-4)","119-29","SECSG",""
"611","17176085","structure","Song J, Lee MS, Carlberg I, Vener AV, Markley JL","Micelle-induced folding of spinach thylakoid soluble phosphoprotein of 9 kDa and its functional implications.","Biochemistry","2006","45(51)","15633-43","CESG","2fft"
"623","17168523","structure","Singh S, Hager MH, Zhang C, Griffith BR, Lee MS, Hallenga K, Markley JL, Thorson JS","Structural insight into the self-sacrifice mechanism of enediyne resistance.","ACS Chemical Biology","2006","1(7)","451-60","CESG","1zxf 2gkd 2l65"
"718","17159147","structure","Li L, Mustafi D, Fu Q, Tereshko V, Chen DL, Tice JD, Ismagilov RF","Nanoliter microfluidic hybrid method for simultaneous screening and optimization validated with crystallization of membrane proteins.","Proceedings of the National Academy of Sciences of the United States of America","2006","103(51)","19243-8","ATCG3D","2i5n"
"606","17141610","structure","Tao L, Mogilner A, Civelekoglu-Scholey G, Wollman R, Evans J, Stahlberg H, Scholey JM","A homotetrameric kinesin-5, KLP61F, bundles microtubules and antagonizes Ncd in motility assays.","Current Biology","2006","16(23)","2293-302","CSMP",""
"610","17128971","structure","Tyler RC, Bitto E, Berndsen CE, Bingman CA, Singh S, Lee MS, Wesenberg GE, Denu JM, Phillips GN, Markley JL","Structure of Arabidopsis thaliana At1g77540 protein, a minimal acetyltransferase from the COG2388 family.","Biochemistry","2006","45(48)","14325-36","CESG","1xmt 2evn 2il4"
"608","17119155","structure","Khademi S, Stroud RM","The Amt/MEP/Rh family: structure of AmtB and the mechanism of ammonia gas conduction.","Physiology","2006","21(3)","419-29","CSMP",""
"714","17099920","structure","Gerdts  CJ, Tereshko  V, Yadav  MK, Dementieva  I, Collart  F, Joachimiak  A, Stevens  RC, Kuhn  P, Kossiakoff  A, Ismagilov  RF","Time-controlled microfluidic seeding in nL-volume droplets to separate nucleation and growth stages of protein crystallization.","Angewandte Chemie International Edition in English","2006","45","8156-60","ATCG3D+MCSG","2h1j"
"620","17088324","structure","Cornilescu G, Vinarov DA, Tyler EM, Markley JL, Cornilescu CC","Solution structure of a single-domain thiosulfate sulfurtransferase from Arabidopsis thaliana.","Protein Science","2006","15(12)","2836-41","CESG","1tq1"
"766","17085441","structure","Hur S, Stroud RM, Finer-Moore J","Substrate recognition by RNA 5-methyluridine methyltransferases and pseudouridine synthases: a structural perspective.","Journal of Biological Chemistry","2006","281(51)","38969-73","CSMP",""
"616","17048257","structure","Jeon WB, Allard ST, Bingman CA, Bitto E, Han BW, Wesenberg GE, Phillips GN","X-ray crystal structures of the conserved hypothetical proteins from Arabidopsis thaliana gene loci At5g11950 and AT2g37210.","Proteins","2006","65(4)","1051-4","CESG","1ydh 2a33"
"626","17004709","structure","Bosch J, Robien MA, Mehlin C, Boni E, Riechers A, Buckner FS, Van Voorhis WC, Myler PJ, Worthey EA, DeTitta G, Luft JR, Lauricella A, Gulde S, Anderson LA, Kalyuzhniy O, Neely HM, Ross J, Earnest TN, Soltis M, Schoenfeld L, Zucker F, Merritt EA, Fan E, Verlinde CL, Hol WG","Using fragment cocktail crystallography to assist inhibitor design of Trypanosoma brucei nucleoside 2-deoxyribosyltransferase.","Journal of Medicinal Chemistry","2006","49(20)","5939-46","SGPP","2a0k"
"674","16999976","structure","Greenfield NJ, Huang YJ, Swapna GV, Bhattacharya A, Rapp B, Singh A, Montelione GT, Hitchcock-DeGregori SE","Solution NMR structure of the junction between tropomyosin molecules: implications for actin binding and regulation.","Journal of Molecular Biology","2006","364(1)","80-96","NESG","2g9j"
"743","16988933","structure","Kosloff M, Han GW, Krishna SS, Schwarzenbacher R, Fasnacht M, Elsliger MA, Abdubek P, Agarwalla S, Ambing E, Astakhova T, Axelrod HL, Canaves JM, Carlton D, Chiu HJ, Clayton T, DiDonato M, Duan L, Feuerhelm J, Grittini C, Grzechnik SK, Hale J, Hampton E, Haugen J, Jaroszewski L, Jin KK, Johnson H, Klock HE, Knuth MW, Koesema E, Kreusch A, Kuhn P, Levin I, McMullan D, Miller MD, Morse AT, Moy K, Nigoghossian E, Okach L, Oommachen S, Page R, Paulsen J, Quijano K, Reyes R, Rife CL, Sims E, Spraggon G, Sridhar V, Stevens RC, van den Bedem H, Velasquez J, White A, Wolf G, Xu Q, Hodgson KO, Wooley J, Deacon AM, Godzik A, Lesley SA, Wilson IA","Comparative structural analysis of a novel glutathioneS-transferase (ATU5508) from Agrobacterium tumefaciens at 2.0 A resolution.","Proteins","2006","65(3)","527-37","JCSG","2fno"
"631","16950398","structure","Peterson FC, Hayes PL, Waltner JK, Heisner AK, Jensen DR, Sander TL, Volkman BF","Structure of the SCAN domain from the tumor suppressor protein MZF1.","Journal of Molecular Biology","2006","363(1)","137-47","CESG","2fi2"
"708","16948158","note","Xu Q, Krishna SS, McMullan D, Schwarzenbacher R, Miller MD, Abdubek P, Agarwalla S, Ambing E, Astakhova T, Axelrod HL, Canaves JM, Carlton D, Chiu HJ, Clayton T, DiDonato M, Duan L, Elsliger MA, Feuerhelm J, Grzechnik SK, Hale J, Hampton E, Han GW, Haugen J, Jaroszewski L, Jin KK, Klock HE, Knuth MW, Koesema E, Kreusch A, Kuhn P, Morse AT, Nigoghossian E, Okach L, Oommachen S, Paulsen J, Quijano K, Reyes R, Rife CL, Spraggon G, Stevens RC, van den Bedem H, White A, Wolf G, Hodgson KO, Wooley J, Deacon AM, Godzik A, Lesley SA, Wilson IA","Crystal structure of an ORFan protein (TM1622) from Thermotoga maritima at 1.75 A resolution reveals a fold similar to the Ran-binding protein Mog1p.","Proteins","2006","65(3)","777-82","JCSG","1vr8"
"613","16929096","structure","McCoy JG, Bingman CA, Bitto E, Holdorf MM, Makaroff CA, Phillips GN","Structure of an ETHE1-like protein from Arabidopsis thaliana.","Acta Crystallographica Section D: Biological Crystallography","2006","62(Pt 9)","964-70","CESG","2gcu"
"728","16927377","structure","Osipiuk J, Maltseva N, Dementieva I, Clancy S, Collart F, Joachimiak A","Structure of YidB protein from Shigella flexneri shows a new fold with homeodomain motif.","Proteins","2006","65(2)","509-13","MCSG","1z67"
"632","16927339","note","DiDonato M, Krishna SS, Schwarzenbacher R, McMullan D, Agarwalla S, Brittain SM, Miller MD, Abdubek P, Ambing E, Axelrod HL, Canaves JM, Chiu HJ, Deacon AM, Duan L, Elsliger MA, Godzik A, Grzechnik SK, Hale J, Hampton E, Haugen J, Jaroszewski L, Jin KK, Klock HE, Knuth MW, Koesema E, Kreusch A, Kuhn P, Lesley SA, Levin I, Morse AT, Nigoghossian E, Okach L, Oommachen S, Paulsen J, Quijano K, Reyes R, Rife CL, Spraggon G, Stevens RC, van den Bedem H, White A, Wolf G, Xu Q, Hodgson KO, Wooley J, Wilson IA","Crystal structure of 2-phosphosulfolactate phosphatase (ComB) from Clostridium acetobutylicum at 2.6 A resolution reveals a new fold with a novel active site.","Proteins","2006","65(3)","771-6","JCSG","1vr0"
"661","16927296","note","Lin YC, Liu G, Shen Y, Bertonati C, Yee A, Honig B, Arrowsmith CH, Szyperski T","NMR structure of protein PA2021 from Pseudomonas aeruginosa.","Proteins","2006","65(3)","767-70","NESG","1ywy 1qqg 1evh 1k5d 1btn 1dro"
"694","16909422","structure","Rao KN, Bonanno JB, Burley SK, Swaminathan S","Crystal structure of glycerophosphodiester phosphodiesterase from Agrobacterium tumefaciens by SAD with a large asymmetric unit.","Proteins","2006","65(2)","514-8","NYSGXRC","1zcc"
"619","16905545","structure","Dias JS, Macedo AL, Ferreira GC, Peterson FC, Volkman BF, Goodfellow BJ","The first structure from the SOUL/HBP family of heme-binding proteins, murine P22HBP.","Journal of Biological Chemistry","2006","281(42)","31553-61","CESG","2gov"
"757","16885468","structure","Buchko GW, Kim CY, Terwilliger TC, Kennedy MA","Solution structure of the conserved hypothetical protein Rv2302 from Mycobacterium tuberculosis.","Journal of Bacteriology","2006","188(16)","5993-6001","TB",""
"761","16884737","structure","Rho BS, Hung LW, Holton JM, Vigil D, Kim SI, Park MS, Terwilliger TC, Pédelacq JD","Functional and structural characterization of a thiol peroxidase from Mycobacterium tuberculosis.","Journal of Molecular Biology","2006","361(5)","850-63","TB",""
"756","16880543","structure","Prabu JR, Thamotharan S, Khanduja JS, Alipio EZ, Kim CY, Waldo GS, Terwilliger TC, Segelke B, Lekin T, Toppani D, Hung LW, Yu M, Bursey E, Muniyappa K, Chandra NR, Vijayan M","Structure of Mycobacterium tuberculosis RuvA, a protein involved in recombination.","Acta Crystallographica Section F: Structural Biology and Crystallization Communications","2006","62(Pt 8)","731-4","TB",""
"2018","16867992","structure","Chrencik JE, Brooun A, Kraus ML, Recht MI, Kolatkar AR, Han GW, Seifert JM, Widmer H, Auer M, Kuhn P","Structural and biophysical characterization of the EphB4*ephrinB2 protein-protein interaction and receptor specificity.","Journal of Biological Chemistry","2006","281","28185-92","ATCG3D","2hle"
"706","16865708","note","Mathews II, Krishna SS, Schwarzenbacher R, McMullan D, Jaroszewski L, Miller MD, Abdubek P, Agarwalla S, Ambing E, Axelrod HL, Canaves JM, Carlton D, Chiu HJ, Clayton T, DiDonato M, Duan L, Elsliger MA, Grzechnik SK, Hale J, Hampton E, Haugen J, Jin KK, Klock HE, Koesema E, Kovarik JS, Kreusch A, Kuhn P, Levin I, Morse AT, Nigoghossian E, Okach L, Oommachen S, Paulsen J, Quijano K, Reyes R, Rife CL, Spraggon G, Stevens RC, van den Bedem H, White A, Wolf G, Xu Q, Hodgson KO, Wooley J, Deacon AM, Godzik A, Lesley SA, Wilson IA","Crystal structure of phosphoribosylformyl-glycinamidine synthase II, PurS subunit (TM1244) from Thermotoga maritima at 1.90 A resolution.","Proteins","2006","65(1)","249-54","JCSG","1vq3"
"707","16865707","note","Schwarzenbacher R, McMullan D, Krishna SS, Xu Q, Miller MD, Canaves JM, Elsliger MA, Floyd R, Grzechnik SK, Jaroszewski L, Klock HE, Koesema E, Kovarik JS, Kreusch A, Kuhn P, McPhillips TM, Morse AT, Quijano K, Spraggon G, Stevens RC, van den Bedem H, Wolf G, Hodgson KO, Wooley J, Deacon AM, Godzik A, Lesley SA, Wilson IA","Crystal structure of a glycerate kinase (TM1585) from Thermotoga maritima at 2.70 A resolution reveals a new fold.","Proteins","2006","65(1)","243-8","JCSG","2b8n"
"727","16862575","structure","Rajan SS, Yang X, Shuvalova L, Collart F, Anderson WF","Crystal structure of YfiR, an unusual TetR/CamR-type putative transcriptional regulator from Bacillus subtilis.","Proteins","2006","65(1)","255-7","MCSG","1rkt"
"622","16857941","structure","Eshaghi S, Niegowski D, Kohl A, Martinez Molina D, Lesley SA, Nordlund P","Crystal structure of a divalent metal ion transporter CorA at 2.9 angstrom resolution.","Science","2006","313(5785)","354-7","JCSG",""
"1517","16838328","structure","Kumaran D, Bonanno JB, Burley SK, Swaminathan S","Crystal structure of phosphatidylglycerophosphatase (PGPase), a putative membrane-bound lipid phosphatase, reveals a novel binuclear metal binding site and two \"proton wires\".","Proteins","2006","64(4)","851-62","NYSGXRC","1y9i"
"658","16826544","structure","Etezady-Esfarjani T, Placzek WJ, Herrmann T, Wüthrich K","Solution structures of the putative anti-sigma-factor antagonist TM1442 from Thermotoga maritima in the free and phosphorylated states.","Magnetic Resonance in Chemistry","2006","44 Spec No(16)","S61-70","JCSG","1sbo 1t6r"
"713","16821128","note","Almeida MS, Johnson MA, Wüthrich K","NMR assignment of the SARS-CoV protein nsp1.","Journal of Biomolecular NMR","2006","36 Suppl 1(4)","46","JCSG",""
"692","16815921","structure","Rao KN, Kumaran D, Seetharaman J, Bonanno JB, Burley SK, Swaminathan S","Crystal structure of trehalose-6-phosphate phosphatase-related protein: biochemical and biological implications.","Protein Science","2006","15(7)","1735-44","NYSGXRC","1u02"
"712","16799860","note","Serrano P, Almeida MS, Johnson MA, Wüthrich K","NMR assignment of the protein nsp3a from SARS-CoV.","Journal of Biomolecular NMR","2006","36 Suppl 1(1)","45","JCSG",""
"709","16783794","note","Xu Q, Schwarzenbacher R, Krishna SS, McMullan D, Agarwalla S, Quijano K, Abdubek P, Ambing E, Axelrod H, Biorac T, Canaves JM, Chiu HJ, Elsliger MA, Grittini C, Grzechnik SK, DiDonato M, Hale J, Hampton E, Han GW, Haugen J, Hornsby M, Jaroszewski L, Klock HE, Knuth MW, Koesema E, Kreusch A, Kuhn P, Miller MD, Moy K, Nigoghossian E, Paulsen J, Reyes R, Rife C, Spraggon G, Stevens RC, van den Bedem H, Velasquez J, White A, Wolf G, Hodgson KO, Wooley J, Deacon AM, Godzik A, Lesley SA, Wilson IA","Crystal structure of acireductone dioxygenase (ARD) from Mus musculus at 2.06 angstrom resolution.","Proteins","2006","64(3)","808-13","JCSG","1vr3"
"634","16779835","note","Han GW, Sri Krishna S, Schwarzenbacher R, McMullan D, Ginalski K, Elsliger MA, Brittain SM, Abdubek P, Agarwalla S, Ambing E, Astakhova T, Axelrod H, Canaves JM, Chiu HJ, DiDonato M, Grzechnik SK, Hale J, Hampton E, Haugen J, Jaroszewski L, Jin KK, Klock HE, Knuth MW, Koesema E, Kreusch A, Kuhn P, Miller MD, Morse AT, Moy K, Nigoghossian E, Oommachen S, Ouyang J, Paulsen J, Quijano K, Reyes R, Rife C, Spraggon G, Stevens RC, van den Bedem H, Velasquez J, Wang X, West B, White A, Wolf G, Xu Q, Hodgson KO, Wooley J, Deacon AM, Godzik A, Lesley SA, Wilson IA","Crystal structure of the ApbE protein (TM1553) from Thermotoga maritima at 1.58 A resolution.","Proteins","2006","64(4)","1083-90","JCSG","1vrm"
"719","16777962","structure","Eswaramoorthy S, Bonanno JB, Burley SK, Swaminathan S","Mechanism of action of a flavin-containing monooxygenase.","Proceedings of the National Academy of Sciences of the United States of America","2006","103(26)","9832-7","NYSGXRC","2gv8"
"731","16763151","structure","Mougous JD, Cuff ME, Raunser S, Shen A, Zhou M, Gifford CA, Goodman AL, Joachimiak G, Ordoñez CL, Lory S, Walz T, Joachimiak A, Mekalanos JJ","A virulence locus of Pseudomonas aeruginosa encodes a protein secretion apparatus.","Science","2006","312(5779)","1526-30","MCSG","1y12"
"691","16756997","structure","Manjasetty BA, Chance MR","Crystal structure of Escherichia coli L-arabinose isomerase (ECAI), the putative target of biological tagatose production.","Journal of Molecular Biology","2006","360(2)","297-309","NYSGXRC","2ajt"
"640","16754964","structure","Lytle BL, Peterson FC, Tyler EM, Newman CL, Vinarov DA, Markley JL, Volkman BF","Solution structure of Arabidopsis thaliana protein At5g39720.1, a member of the AIG2-like protein family.","Acta Crystallographica Section F: Structural Biology and Crystallization Communications","2006","62(Pt 6)","490-3","CESG","2g0q"
"720","16741959","note","Srisailam S, Lukin JA, Yee A, Semesi A, Arrowsmith CH","Solution structure of acyl carrier protein from Nitrosomonas europaea.","Proteins","2006","64(3)","800-3","NESG","2amw"
"671","16703420","note","Srisailam S, Lukin JA, Lemak A, Yee A, Arrowsmith CH","Sequence specific resonance assignment of a hypothetical protein PA0128 from Pseudomonas aeruginosa.","Journal of Biomolecular NMR","2006","36 Suppl 1(11)","27","NESG","2akl"
"627","16682767","structure","Holmes MA, Buckner FS, Van Voorhis WC, Verlinde CL, Mehlin C, Boni E, DeTitta G, Luft J, Lauricella A, Anderson L, Kalyuzhniy O, Zucker F, Schoenfeld LW, Earnest TN, Hol WG, Merritt EA","Structure of ribose 5-phosphate isomerase from Plasmodium falciparum.","Acta Crystallographica Section F: Structural Biology and Crystallization Communications","2006","62(Pt 5)","427-31","SGPP","2f8m"
"735","16672238","structure","Gorelik M, Lunin VV, Skarina T, Savchenko A","Structural characterization of GntR/HutC family signaling domain.","Protein Science","2006","15(6)","1506-11","MCSG","2fa1"
"621","16672222","structure","Bitto E, Bingman CA, Wesenberg GE, McCoy JG, Phillips GN","Structure of pyrimidine 5'-nucleotidase type 1. Insight into mechanism of action and inhibition during lead poisoning","Journal of Biological Chemistry","2006","281(29)","20521-9","CESG","2bdu 2g06 2g07 2g08 2g09 2g0a"
"612","16627939","structure","Moe LA, Bingman CA, Wesenberg GE, Phillips GN, Fox BG","Structure of T4moC, the Rieske-type ferredoxin component of toluene 4-monooxygenase.","Acta Crystallographica Section D: Biological Crystallography","2006","62(Pt 5)","476-82","CESG","1vm9"
"609","16609803","structure","Mason A, Agrawal N, Washington MT, Lesley SA, Kohen A","A lag-phase in the reduction of flavin dependent thymidylate synthase (FDTS) revealed a mechanistic missing link.","Chemical Communications","2006","21(3)(16)","1781-3","JCSG",""
"624","16597827","structure","Johnson MA, Peti W, Herrmann T, Wilson IA, Wüthrich K","Solution structure of Asl1650, an acyl carrier protein from Anabaena sp. PCC 7120 with a variant phosphopantetheinylation-site sequence.","Protein Science","2006","15(5)","1030-41","JCSG",""
"733","16596646","structure","Zhang R, Joachimiak G, Jiang S, Cipriani A, Collart F, Joachimiak A","Structure of phage protein BC1872 from Bacillus cereus, a singleton with new fold.","Proteins","2006","64(1)","280-3","MCSG","1r7l"
"617","16596569","structure","Han BW, Bingman CA, Wesenberg GE, Phillips GN","Crystal structure of Homo sapiens thialysine Nepsilon-acetyltransferase (HsSSAT2) in complex with acetyl coenzyme A.","Proteins","2006","64(1)","288-93","CESG","2bei"
"732","16582479","structure","Zhang R, Skarina T, Evdokimova E, Edwards A, Savchenko A, Laskowski R, Cuff ME, Joachimiak A","Structure of SAICAR synthase from Thermotoga maritima at 2.2 angstroms reveals an unusual covalent dimer.","Acta Crystallographica Section F: Structural Biology and Crystallization Communications","2006","62(Pt 4)","335-9","MCSG","1kut"
"765","16564177","structure","Keatinge-Clay AT, Stroud RM","The structure of a ketoreductase determines the organization of the beta-carbon processing enzymes of modular polyketide synthases.","Structure","2006","14(4)","737-48","CSMP",""
"689","16552139","structure","Agarwal R, Bonanno JB, Burley SK, Swaminathan S","Structure determination of an FMN reductase from Pseudomonas aeruginosa PA01 using sulfur anomalous signal.","Acta Crystallographica Section D: Biological Crystallography","2006","62(Pt 4)","383-91","NYSGXRC","1rtt"
"625","16547135","structure","Bosch J, Turley S, Daly TM, Bogh SM, Villasmil ML, Roach C, Zhou N, Morrisey JM, Vaidya AB, Bergman LW, Hol WG","Structure of the MTIP-MyoA complex, a key component of the malaria parasite invasion motor.","Proceedings of the National Academy of Sciences of the United States of America","2006","103(13)","4852-7","SGPP",""
"705","16544324","note","Mathews II, Krishna SS, Schwarzenbacher R, McMullan D, Abdubek P, Ambing E, Canaves JM, Chiu HJ, Deacon AM, DiDonato M, Elsliger MA, Godzik A, Grittini C, Grzechnik SK, Hale J, Hampton E, Han GW, Haugen J, Jaroszewski L, Klock HE, Koesema E, Kreusch A, Kuhn P, Lesley SA, Levin I, Miller MD, Moy K, Nigoghossian E, Paulsen J, Quijano K, Reyes R, Spraggon G, Stevens RC, van den Bedem H, Velasquez J, White A, Wolf G, Xu Q, Hodgson KO, Wooley J, Wilson IA","Crystal structure of phosphoribosylformylglycinamidine synthase II (smPurL) from Thermotoga maritima at 2.15 A resolution.","Proteins","2006","63(4)","1106-11","JCSG","1vk3"
"635","16544291","note","Jin KK, Krishna SS, Schwarzenbacher R, McMullan D, Abdubek P, Agarwalla S, Ambing E, Axelrod H, Canaves JM, Chiu HJ, Deacon AM, DiDonato M, Elsliger MA, Feuerhelm J, Godzik A, Grittini C, Grzechnik SK, Hale J, Hampton E, Haugen J, Hornsby M, Jaroszewski L, Klock HE, Knuth MW, Koesema E, Kreusch A, Kuhn P, Lesley SA, Miller MD, Moy K, Nigoghossian E, Okach L, Oommachen S, Paulsen J, Quijano K, Reyes R, Rife C, Stevens RC, Spraggon G, van den Bedem H, Velasquez J, White A, Wolf G, Han GW, Xu Q, Hodgson KO, Wooley J, Wilson IA","Crystal structure of TM1367 from Thermotoga maritima at 1.90 A resolution reveals an atypical member of the cyclophilin (peptidylprolyl isomerase) fold.","Proteins","2006","63(4)","1112-8","JCSG","1zx8"
"618","16543243","structure","Han BW, Bingman CA, Mahnke DK, Bannen RM, Bednarek SY, Sabina RL, Phillips GN","Membrane association, mechanism of action, and structure of Arabidopsis embryonic factor 1 (FAC1).","Journal of Biological Chemistry","2006","281(21)","14939-47","CESG","2a3l"
"767","16525509","structure","Mirza O, Guan L, Verner G, Iwata S, Kaback HR","Structural evidence for induced fit and a mechanism for sugar/H+ symport in LacY.","EMBO Journal","2006","25(6)","1177-83","CSMP",""
"745","16522803","structure","Shin DH, Kim JS, Yokota H, Kim R, Kim SH","Crystal structure of the DUF16 domain of MPN010 from Mycoplasma pneumoniae.","Protein Science","2006","15(4)","921-8","BSGC",""
"615","16519510","structure","McCoy JG, Arabshahi A, Bitto E, Bingman CA, Ruzicka FJ, Frey PA, Phillips GN","Structure and mechanism of an ADP-glucose phosphorylase from Arabidopsis thaliana.","Biochemistry","2006","45(10)","3154-62","CESG","1zwj 2h39"
"629","16511296","structure","Holmes MA, Buckner FS, Van Voorhis WC, Mehlin C, Boni E, Earnest TN, DeTitta G, Luft J, Lauricella A, Anderson L, Kalyuzhniy O, Zucker F, Schoenfeld LW, Hol WG, Merritt EA","Structure of the conserved hypothetical protein MAL13P1.257 from Plasmodium falciparum.","Acta Crystallographica Section F: Structural Biology and Crystallization Communications","2006","62(Pt 3)","180-5","SGPP","1zso"
"628","16511295","structure","Arakaki T, Le Trong I, Phizicky E, Quartley E, DeTitta G, Luft J, Lauricella A, Anderson L, Kalyuzhniy O, Worthey E, Myler PJ, Kim D, Baker D, Hol WG, Merritt EA","Structure of Lmaj006129AAA, a hypothetical protein from Leishmania major.","Acta Crystallographica Section F: Structural Biology and Crystallization Communications","2006","62(Pt 3)","175-9","SGPP","2ar1"
"734","16498617","structure","Kim Y, Maltseva N, Dementieva I, Collart F, Holzle D, Joachimiak A","Crystal structure of hypothetical protein YfiH from Shigella flexneri at 2 A resolution.","Proteins","2006","63(4)","1097-101","MCSG","1xaf"
"662","16498616","note","Ni S, Forouhar F, Bussiere DE, Robinson H, Kennedy MA","Crystal structure of VC0702 at 2.0 A: conserved hypothetical protein from Vibrio cholerae.","Proteins","2006","63(4)","733-41","NESG","1zno"
"725","16493657","structure","Nocek B, Cuff M, Evdokimova E, Edwards A, Joachimiak A, Savchenko A","1.6 A crystal structure of a PA2721 protein from pseudomonas aeruginosa--a potential drug-resistance protein","Proteins","2006","63(4)","1102-5","MCSG","1u69"
"614","16492780","structure","McCoy JG, Bailey LJ, Bitto E, Bingman CA, Aceti DJ, Fox BG, Phillips GN","Structure and mechanism of mouse cysteine dioxygenase.","Proceedings of the National Academy of Sciences of the United States of America","2006","103(9)","3084-9","CESG","2atf"
"673","16482161","structure","Yu B, Edstrom WC, Benach J, Hamuro Y, Weber PC, Gibney BR, Hunt JF","Crystal structures of catalytic complexes of the oxidative DNA/RNA repair enzyme AlkB.","Nature","2006","439(7078)","879-84","NESG","2fd8 2fdf 2fdg 2fdh 2fdi 2fdj 2fdk"
"688","16477602","structure","Seetharaman J, Rajashankar KR, Solorzano V, Kniewel R, Lima CD, Bonanno JB, Burley SK, Swaminathan S","Crystal structures of two putative phosphoheptose isomerases.","Proteins","2006","63(4)","1092-6","NYSGXRC","1tk9"
"687","16475182","structure","Seetharaman J, Kumaran D, Bonanno JB, Burley SK, Swaminathan S","Crystal structure of a putative HTH-type transcriptional regulator yxaF from Bacillus subtilis.","Proteins","2006","63(4)","1087-91","NYSGXRC","1sgm"
"2017","16472751","structure","Chrencik JE, Brooun A, Recht MI, Kraus ML, Koolpe M, Kolatkar AR, Bruce RH, Martiny-Baron G, Widmer H, Pasquale EB, Kuhn P","Structure and thermodynamic characterization of the EphB4/Ephrin-B2 antagonist peptide complex reveals the determinants for receptor specificity.","Structure","2006","14","321-30","ATCG3D","2bba"
"686","16464851","structure","Song F, Zhuang Z, Finci L, Dunaway-Mariano D, Kniewel R, Buglino JA, Solorzano V, Wu J, Lima CD","Structure, function, and mechanism of the phenylacetate pathway hot dog-fold thioesterase PaaI.","Journal of Biological Chemistry","2006","281(16)","11028-38","NYSGXRC","2fs2"
"759","16460002","structure","Wang S, Eisenberg D","Crystal structure of the pantothenate synthetase from Mycobacterium tuberculosis, snapshots of the enzyme in action.","Biochemistry","2006","45(6)","1554-61","TB",""
"685","16455797","structure","Bewley MC, Graziano V, Jiang J, Matz E, Studier FW, Pegg AE, Coleman CS, Flanagan JM","Structures of wild-type and mutant human spermidine/spermine N1-acetyltransferase, a potential therapeutic drug target.","Proceedings of the National Academy of Sciences of the United States of America","2006","103(7)","2063-8","NYSGXRC","2b3u"
"633","16435371","note","DiDonato M, Krishna SS, Schwarzenbacher R, McMullan D, Jaroszewski L, Miller MD, Abdubek P, Agarwalla S, Ambing E, Axelrod H, Biorac T, Chiu HJ, Deacon AM, Elsliger MA, Feuerhelm J, Godzik A, Grittini C, Grzechnik SK, Hale J, Hampton E, Haugen J, Hornsby M, Klock HE, Knuth MW, Koesema E, Kreusch A, Kuhn P, Lesley SA, Moy K, Nigoghossian E, Okach L, Paulsen J, Quijano K, Reyes R, Rife C, Spraggon G, Stevens RC, van den Bedem H, Velasquez J, White A, Wolf G, Xu Q, Hodgson KO, Wooley J, Wilson IA","Crystal structure of a single-stranded DNA-binding protein (TM0604) from Thermotoga maritima at 2.60 A resolution.","Proteins","2006","63(1)","256-60","JCSG","1z9f"
"726","16415883","structure","Brett TJ, Legendre-Guillemin V, McPherson PS, Fremont DH","Structural definition of the F-actin-binding THATCH domain from HIP1R.","Nature Structural & Molecular Biology","2006","13(2)","121-30","MCSG","1r0d"
"760","16387658","structure","Mougous JD, Lee DH, Hubbard SC, Schelle MW, Vocadlo DJ, Berger JM, Bertozzi CR","Molecular basis for G protein control of the prokaryotic ATP sulfurylase.","Molecular Cell","2006","21(1)","109-22","TB",""
"607","16375925","structure","Robinson-Rechavi M, Alibés A, Godzik A","Contribution of electrostatic interactions, compactness and quaternary structure to protein thermostability: lessons from structural genomics of Thermotoga maritima.","Journal of Molecular Biology","2006","356(2)","547-57","JCSG",""
"758","16374842","structure","Pédelacq JD, Rho BS, Kim CY, Waldo GS, Lekin TP, Segelke BW, Rupp B, Hung LW, Kim SI, Terwilliger TC","Crystal structure of a putative pyridoxine 5'-phosphate oxidase (Rv2607) from Mycobacterium tuberculosis","Proteins","2006","62(3)","563-9","TB",""
"630","16345073","structure","Robien MA, Bosch J, Buckner FS, Van Voorhis WC, Worthey EA, Myler P, Mehlin C, Boni EE, Kalyuzhniy O, Anderson L, Lauricella A, Gulde S, Luft JR, DeTitta G, Caruthers JM, Hodgson KO, Soltis M, Zucker F, Verlinde CL, Merritt EA, Schoenfeld LW, Hol WG","Crystal structure of glyceraldehyde-3-phosphate dehydrogenase from Plasmodium falciparum at 2.25 A resolution reveals intriguing extra electron density in the active site.","Proteins","2006","62(3)","570-7","SGPP",""
"666","16330550","structure","Fu Z, Runquist JA, Forouhar F, Hussain M, Hunt JF, Miziorko HM, Kim JJ","Crystal structure of human 3-hydroxy-3-methylglutaryl-CoA Lyase: insights into catalysis and the molecular basis for hydroxymethylglutaric aciduria.","Journal of Biological Chemistry","2006","281(11)","7526-32","NESG","2cw6"
"672","16330546","structure","Forouhar F, Hussain M, Farid R, Benach J, Abashidze M, Edstrom WC, Vorobiev SM, Xiao R, Acton TB, Fu Z, Kim JJ, Miziorko HM, Montelione GT, Hunt JF","Crystal structures of two bacterial 3-hydroxy-3-methylglutaryl-CoA lyases suggest a common catalytic mechanism among a family of TIM barrel metalloenzymes cleaving carbon-carbon bonds.","Journal of Biological Chemistry","2006","281(11)","7533-45","NESG","1ydn 1ydo"
"764","16325203","structure","Kuratani M, Sakai H, Takahashi M, Yanagisawa T, Kobayashi T, Murayama K, Chen L, Liu ZJ, Wang BC, Kuroishi C, Kuramitsu S, Terada T, Bessho Y, Shirouzu M, Sekine S, Yokoyama S","Crystal structures of tyrosyl-tRNA synthetases from Archaea.","Journal of Molecular Biology","2006","355(3)","395-408","SECSG","2cya"
"641","16304640","structure","Caruthers J, Bosch J, Buckner F, Van Voorhis W, Myler P, Worthey E, Mehlin C, Boni E, DeTitta G, Luft J, Lauricella A, Kalyuzhniy O, Anderson L, Zucker F, Soltis M, Hol WG","Structure of a ribulose 5-phosphate 3-epimerase from Plasmodium falciparum.","Proteins","2006","62(2)","338-42","SGPP","1tqx"
"650","16294331","structure","Kim JS, Shin DH, Pufan R, Huang C, Yokota H, Kim R, Kim SH","Crystal structure of ScpB from Chlorobium tepidum, a protein involved in chromosome partitioning.","Proteins","2006","62(2)","322-8","BSGC",""
"729","16287140","structure","Bielnicki J, Devedjiev Y, Derewenda U, Dauter Z, Joachimiak A, Derewenda ZS","B. subtilis ykuD protein at 2.0 A resolution: insights into the structure and function of a novel, ubiquitous family of bacterial enzymes.","Proteins","2006","62(1)","144-51","MCSG","1y7m"
"711","16287129","note","Xu Q, Schwarzenbacher R, McMullan D, Abdubek P, Agarwalla S, Ambing E, Axelrod H, Biorac T, Canaves JM, Chiu HJ, Deacon AM, DiDonato M, Elsliger MA, Godzik A, Grittini C, Grzechnik SK, Hale J, Hampton E, Han GW, Haugen J, Hornsby M, Jaroszewski L, Klock HE, Koesema E, Kreusch A, Kuhn P, Lesley SA, Miller MD, Moy K, Nigoghossian E, Paulsen J, Quijano K, Reyes R, Rife C, Spraggon G, Stevens RC, van den Bedem H, Velasquez J, White A, Wolf G, Hodgson KO, Wooley J, Wilson IA","Crystal structure of virulence factor CJ0248 from Campylobacter jejuni at 2.25 A resolution reveals a new fold.","Proteins","2006","62(1)","292-6","JCSG","1vqr"
"730","16287087","structure","Qiu Y, Tereshko V, Kim Y, Zhang R, Collart F, Yousef M, Kossiakoff A, Joachimiak A","The crystal structure of Aq_328 from the hyperthermophilic bacteria Aquifex aeolicus shows an ancestral histone fold.","Proteins","2006","62(1)","8-16","MCSG","1r4v"
"710","16281282","note","Liu G, Shen Y, Xiao R, Acton T, Ma LC, Joachimiak A, Montelione GT, Szyperski T","NMR structure of protein yqbG from Bacillus subtilis reveals a novel alpha-helical protein fold.","Proteins","2006","62","288-91","MCSG+NESG","1zts"
"740","","structure","Khademi S, Stroud RM","Aquaporins: Integral Membrane Channel Proteins","","2006","","","CSMP",""
"744","","structure","Stroud RM, Harries WEC, Lee J, Khademi S, Savage D","Gas Channels for Ammonia","","2006","","","CSMP",""
"931","16511207","structure","Zhan C, Fedorov EV, Shi W, Ramagopal UA, Thirumuruhan R, Manjasetty BA, Almo SC, Fiser A, Chance MR, Fedorov AA","The ybeY protein from Escherichia coli is a metalloprotein.","Acta Crystallographica Section F: Structural Biology and Crystallization Communications","2005","61(Pt 11)","959-63","NYSGXRC","1xm5"
"777","16511166","structure","Bitto E, Bingman CA, Robinson H, Allard ST, Wesenberg GE, Phillips GN","The structure at 2.5 A resolution of human basophilic leukemia-expressed protein BLES03.","Acta Crystallographica Section F: Structural Biology and Crystallization Communications","2005","61(Pt 9)","812-7","CESG","1ztp"
"1597","16511144","structure","Han  BW, Bingman  CA, Mahnke  DK, Sabina  RL, Phillips  GN","Crystallization and preliminary X-ray crystallographic analysis of adenosine 5'-monophosphate deaminase (AMPD) from Arabidopsis thaliana in complex with coformycin 5'-phosphate.","Acta Crystallographica Section F: Structural Biology and Crystallization Communications","2005","61","740-2","CESG","2a3l"
"770","16511118","structure","Allard ST, Bingman CA, Johnson KA, Wesenberg GE, Bitto E, Jeon WB, Phillips GN","Structure at 1.6 A resolution of the protein from gene locus At3g22680 from Arabidopsis thaliana.","Acta Crystallographica Section F: Structural Biology and Crystallization Communications","2005","61(Pt 7)","647-50","CESG","1vk5"
"788","16511117","structure","Oganesyan V, Huang C, Adams PD, Jancarik J, Yokota HA, Kim R, Kim SH","Structure of a NAD kinase from Thermotoga maritima at 2.3 A resolution.","Acta Crystallographica Section F: Structural Biology and Crystallization Communications","2005","61(Pt 7)","640-6","BSGC","1yt5"
"775","16511115","structure","Bitto E, Bingman CA, Allard ST, Wesenberg GE, Phillips GN","The structure at 1.7 A resolution of the protein product of the At2g17340 gene from Arabidopsis thaliana.","Acta Crystallographica Section F: Structural Biology and Crystallization Communications","2005","61(Pt 7)","630-5","CESG","1xfi"
"780","16511090","structure","Zhou W, Das A, Habel JE, Liu ZJ, Chang J, Chen L, Lee D, Nguyen D, Chang SH, Tempel W, Rose JP, Ljungdahl LG, Wang BC","Isolation, crystallization and preliminary X-ray analysis of a methanol-induced corrinoid protein from Moorella thermoacetica.","Acta Crystallographica Section F: Structural Biology and Crystallization Communications","2005","61(Pt 5)","537-40","SECSG",""
"774","16511070","structure","Bitto E, Bingman CA, Allard ST, Wesenberg GE, Aceti DJ, Wrobel RL, Frederick RO, Sreenath H, Vojtik FC, Jeon WB, Newman CS, Primm J, Sussman MR, Fox BG, Markley JL, Phillips GN","The structure at 2.4 A resolution of the protein from gene locus At3g21360, a putative Fe(II)/2-oxoglutarate-dependent enzyme from Arabidopsis thaliana.","Acta Crystallographica Section F: Structural Biology and Crystallization Communications","2005","61(Pt 5)","469-72","CESG","1y0z"
"883","16415590","structure","Greenstein AE, Grundner C, Echols N, Gay LM, Lombana TN, Miecskowski CA, Pullen KE, Sung PY, Alber T","Structure/function studies of Ser/Thr and Tyr protein phosphorylation in Mycobacterium tuberculosis.","Journal of Molecular Microbiology and Biotechnology","2005","9(3-4)","167-81","TB",""
"795","16365312","structure","Credle JJ, Finer-Moore JS, Papa FR, Stroud RM, Walter P","On the mechanism of sensing unfolded protein in the endoplasmic reticulum.","Proceedings of the National Academy of Sciences of the United States of America","2005","102(52)","18773-84","CSMP",""
"796","16361443","structure","Lee JK, Kozono D, Remis J, Kitagawa Y, Agre P, Stroud RM","Structural basis for conductance by the archaeal aquaporin AqpM at 1.68 A.","Proceedings of the National Academy of Sciences of the United States of America","2005","102(52)","18932-7","CSMP",""
"943","16331425","note","Rossi P, Theresa Ramelot SS, Xiao R, Ho CK, Ma LC, Acton TB, Kennedy MA, Montelione GT","1H, 13C, and 15N resonance assignments for the protein coded by gene locus BB0938 of Bordetella bronchiseptica.","Journal of Biomolecular NMR","2005","33(3)","197","NESG","2exn"
"913","16331424","note","Aramini JM, Swapna GV, Huang YJ, Rajan PK, Xiao R, Shastry R, Acton TB, Cort JR, Kennedy MA, Montelione GT","1H, 13C, and 15N resonance assignments for Escherichia coli ytfP, a member of the broadly conserved UPF0131 protein domain family.","Journal of Biomolecular NMR","2005","33(3)","197","NESG","2exn 1xhs"
"930","16322580","structure","Gorman J, Shapiro L","Crystal structures of the tryptophan repressor binding protein WrbA and complexes with flavin mononucleotide.","Protein Science","2005","14(12)","3004-12","NYSGXRC","1yrh"
"776","16301800","structure","Bitto E, Bingman CA, McCoy JG, Allard ST, Wesenberg GE, Phillips GN","The structure at 1.6 Angstroms resolution of the protein product of the At4g34215 gene from Arabidopsis thaliana.","Acta Crystallographica Section D: Biological Crystallography","2005","61(Pt 12)","1655-61","CESG","2apj"
"301","16289575","structure","Song J, Tyler RC, Lee MS, Tyler EM, Markley JL","Solution structure of isoform 1 of Roadblock/LC7, a light chain in the dynein complex.","Journal of Molecular Biology","2005","354(5)","1043-51","CESG","1y4o"
"793","16283428","structure","Xu QS, Jancarik J, Lou Y, Kuznetsova K, Yakunin AF, Yokota H, Adams P, Kim R, Kim SH","Crystal structures of a phosphotransacetylase from Bacillus subtilis and its complex with acetyl phosphate.","Journal of Structural and Functional Genomics","2005","6(4)","269-79","BSGC","1td9"
"881","16271885","structure","Grundner C, Ng HL, Alber T","Mycobacterium tuberculosis protein tyrosine phosphatase PtpB structure reveals a diverged fold and a buried active site.","Structure","2005","13(11)","1625-34","TB",""
"890","16260766","structure","Sun W, Xu X, Pavlova M, Edwards AM, Joachimiak A, Savchenko A, Christendat D","The crystal structure of a novel SAM-dependent methyltransferase PH1915 from Pyrococcus horikoshii.","Protein Science","2005","14(12)","3121-8","MCSG","2as0"
"920","16260765","structure","Revington M, Semesi A, Yee A, Shaw GS","Solution structure of the Escherichia coli protein ydhR: a putative mono-oxygenase.","Protein Science","2005","14(12)","3115-20","NESG","2asy"
"923","16251366","structure","Powers R, Mirkovic N, Goldsmith-Fischman S, Acton TB, Chiang Y, Huang YJ, Ma L, Rajan PK, Cort JR, Kennedy MA, Liu J, Rost B, Honig B, Murray D, Montelione GT","Solution structure of Archaeglobus fulgidis peptidyl-tRNA hydrolase (Pth2) provides evidence for an extensive conserved family of Pth2 enzymes in archea, bacteria, and eukaryotes.","Protein Science","2005","14(11)","2849-61","NESG","1rzw"
"818","16242963","structure","Shin DH, Lou Y, Jancarik J, Yokota H, Kim R, Kim SH","Crystal structure of TM1457 from Thermotoga maritima.","Journal of Structural Biology","2005","152(2)","113-7","BSGC",""
"787","16242716","structure","Liu J, Lou Y, Yokota H, Adams PD, Kim R, Kim SH","Crystal structures of an NAD kinase from Archaeoglobus fulgidus in complex with ATP, NAD, or NADP.","Journal of Molecular Biology","2005","354(2)","289-303","BSGC","1z0s"
"895","16233902","structure","Nocek B, Chang C, Li H, Lezondra L, Holzle D, Collart F, Joachimiak A","Crystal structures of delta1-pyrroline-5-carboxylate reductase from human pathogens Neisseria meningitides and Streptococcus pyogenes.","Journal of Molecular Biology","2005","354(1)","91-106","MCSG","1yqg 2ag8 1xc2"
"816","16224779","note","Klock HE, Schwarzenbacher R, Xu Q, McMullan D, Abdubek P, Ambing E, Axelrod H, Biorac T, Canaves JM, Chiu HJ, Deacon AM, DiDonato M, Elsliger MA, Godzik A, Grittini C, Grzechnik SK, Hale J, Hampton E, Han GW, Haugen J, Hornsby M, Jaroszewski L, Koesema E, Kreusch A, Kuhn P, Miller MD, Moy K, Nigoghossian E, Paulsen J, Quijano K, Reyes R, Rife C, Sims E, Spraggon G, Stevens RC, van den Bedem H, Velasquez J, Vincent J, White A, Wolf G, Hodgson KO, Wooley J, Lesley SA, Wilson IA","Crystal structure of a conserved hypothetical protein (gi: 13879369) from Mouse at 1.90 A resolution reveals a new fold.","Proteins","2005","61(4)","1132-6","JCSG","1vkb"
"799","16211487","structure","Song J, Zhao Q, Lee MS, Markley JL","1H, 15N and 13C resonance assignments of the putative Bet v 1 family protein At1g24000.1 from Arabidopsis thaliana.","Journal of Biomolecular NMR","2005","32(4)","335","CESG","1vjh"
"926","16210326","structure","Forouhar F, Lee IS, Vujcic J, Vujcic S, Shen J, Vorobiev SM, Xiao R, Acton TB, Montelione GT, Porter CW, Tong L","Structural and functional evidence for Bacillus subtilis PaiA as a novel N1-spermidine/spermine acetyltransferase.","Journal of Biological Chemistry","2005","280(48)","40328-36","NESG","1tiq"
"790","16204885","structure","Schulze-Gahmen U, Aono S, Chen S, Yokota H, Kim R, Kim SH","Structure of the hypothetical Mycoplasma protein MPN555 suggests a chaperone function.","Acta Crystallographica Section D: Biological Crystallography","2005","61(Pt 10)","1343-7","BSGC",""
"921","16202234","structure","Jung JW, Yee A, Wu B, Arrowsmith CH, Lee W","Solution structure of YKR049C, a putative redox protein from Saccharomyces cerevisiae.","Journal of Biochemistry and Molecular Biology","2005","38(5)","550-4","NESG","1wpi"
"797","16199669","structure","Caruthers J, Zucker F, Worthey E, Myler PJ, Buckner F, Van Voorhuis W, Mehlin C, Boni E, Feist T, Luft J, Gulde S, Lauricella A, Kaluzhniy O, Anderson L, Le Trong I, Holmes MA, Earnest T, Soltis M, Hodgson KO, Hol WG, Merritt EA","Crystal structures and proposed structural/functional classification of three protozoan proteins from the isochorismatase superfamily.","Protein Science","2005","14(11)","2887-94","SGPP","1yzv"
"862","16199668","structure","Almeida MS, Herrmann T, Peti W, Wilson IA, Wüthrich K","NMR structure of the conserved hypothetical protein TM0487 from Thermotoga maritima: implications for 216 homologous DUF59 proteins.","Protein Science","2005","14(11)","2880-6","JCSG",""
"865","16188992","note","Peti W, Johnson MA, Herrmann T, Neuman BW, Buchmeier MJ, Nelson M, Joseph J, Page R, Stevens RC, Kuhn P, Wüthrich K","Structural genomics of the severe acute respiratory syndrome coronavirus: nuclear magnetic resonance structure of the protein nsP7.","Journal of Virology","2005","79(20)","12905-13","JCSG",""
"815","16167343","note","Jaroszewski L, Schwarzenbacher R, McMullan D, Abdubek P, Agarwalla S, Ambing E, Axelrod H, Biorac T, Canaves JM, Chiu HJ, Deacon AM, DiDonato M, Elsliger MA, Godzik A, Grittini C, Grzechnik SK, Hale J, Hampton E, Han GW, Haugen J, Hornsby M, Klock HE, Koesema E, Kreusch A, Kuhn P, Lesley SA, Miller MD, Moy K, Nigoghossian E, Paulsen J, Quijano K, Reyes R, Rife C, Spraggon G, Stevens RC, van den Bedem H, Velasquez J, Vincent J, White A, Wolf G, Xu Q, Hodgson KO, Wooley J, Wilson IA","Crystal structure of Hsp33 chaperone (TM1394) from Thermotoga maritima at 2.20 A resolution.","Proteins","2005","61(3)","669-73","JCSG","1vq0"
"875","16155207","structure","Akey DL, Berger JM","Structure of the nuclease domain of ribonuclease III from M. tuberculosis at 2.1 A.","Protein Science","2005","14(10)","2744-50","TB",""
"771","16155204","structure","Singh S, Cornilescu CC, Tyler RC, Cornilescu G, Tonelli M, Lee MS, Markley JL","Solution structure of a late embryogenesis abundant protein (LEA14) from Arabidopsis thaliana, a cellular stress-related protein.","Protein Science","2005","14(10)","2601-9","CESG","1xo8"
"773","16154095","structure","Chappie JS, Cànaves JM, Han GW, Rife CL, Xu Q, Stevens RC","The structure of a eukaryotic nicotinic acid phosphoribosyltransferase reveals structural heterogeneity among type II PRTases.","Structure","2005","13(9)","1385-96","JCSG","1vlp"
"915","16132835","note","Liu G, Aramini J, Atreya HS, Eletsky A, Xiao R, Acton T, Ma L, Montelione GT, Szyperski T","GFT NMR based resonance assignment for the 21 kDa human protein UFC1.","Journal of Biomolecular NMR","2005","32(3)","261","NESG","2k07"
"781","16131758","structure","Schnick C, Robien MA, Brzozowski AM, Dodson EJ, Murshudov GN, Anderson L, Luft JR, Mehlin C, Hol WG, Brannigan JA, Wilkinson AJ","Structures of Plasmodium falciparum purine nucleoside phosphorylase complexed with sulfate and its natural substrate inosine.","Acta Crystallographica Section D: Biological Crystallography","2005","61(Pt 9)","1245-54","SGPP","1sq6"
"783","16104022","structure","Chen S, Yakunin AF, Proudfoot M, Kim R, Kim SH","Structural and functional characterization of a 5,10-methenyltetrahydrofolate synthetase from Mycoplasma pneumoniae (GI: 13508087).","Proteins","2005","61(2)","433-43","BSGC",""
"803","16104019","note","Rife C, Schwarzenbacher R, McMullan D, Abdubek P, Ambing E, Axelrod H, Biorac T, Canaves JM, Chiu HJ, Deacon AM, DiDonato M, Elsliger MA, Godzik A, Grittini C, Grzechnik SK, Hale J, Hampton E, Han GW, Haugen J, Hornsby M, Jaroszewski L, Klock HE, Koesema E, Kreusch A, Kuhn P, Lesley SA, Miller MD, Moy K, Nigoghossian E, Paulsen J, Quijano K, Reyes R, Sims E, Spraggon G, Stevens RC, van den Bedem H, Velasquez J, Vincent J, White A, Wolf G, Xu Q, Hodgson KO, Wooley J, Wilson IA","Crystal structure of a putative modulator of DNA gyrase (pmbA) from Thermotoga maritima at 1.95 A resolution reveals a new fold.","Proteins","2005","61(2)","444-8","JCSG","1vl4"
"804","16104018","note","Rife C, Schwarzenbacher R, McMullan D, Abdubek P, Ambing E, Axelrod H, Biorac T, Canaves JM, Chiu HJ, Deacon AM, DiDonato M, Elsliger MA, Godzik A, Grittini C, Grzechnik SK, Hale J, Hampton E, Han GW, Haugen J, Hornsby M, Jaroszewski L, Klock HE, Koesema E, Kreusch A, Kuhn P, Lesley SA, Miller MD, Moy K, Nigoghossian E, Paulsen J, Quijano K, Reyes R, Sims E, Spraggon G, Stevens RC, van den Bedem H, Velasquez J, Vincent J, White A, Wolf G, Xu Q, Hodgson KO, Wooley J, Wilson IA","Crystal structure of the global regulatory protein CsrA from Pseudomonas putida at 2.05 A resolution reveals a new fold.","Proteins","2005","61(2)","449-53","JCSG","1vpz"
"798","16081658","structure","Waltner JK, Peterson FC, Lytle BL, Volkman BF","Structure of the B3 domain from Arabidopsis thaliana protein At1g16640.","Protein Science","2005","14(9)","2478-83","CESG","1yel"
"856","16080145","note","Fox BG, Malone TE, Johnson KA, Madson SE, Aceti D, Bingman CA, Blommel PG, Buchan B, Burns B, Cao J, Cornilescu C, Doreleijers J, Ellefson J, Frederick R, Geetha H, Hruby D, Jeon WB, Kimball T, Kunert J, Markley JL, Newman C, Olson A, Peterson FC, Phillips GN, Primm J, Ramirez B, Rosenberg NS, Runnels M, Seder K, Shaw J, Smith DW, Sreenath H, Song J, Sussman MR, Thao S, Troestler D, Tyler E, Tyler R, Ulrich E, Vinarov D, Vojtik F, Volkman BF, Wesenberg G, Wrobel RL, Zhang J, Zhao Q, Zolnai Z","X-ray structure of Arabidopsis At1g77680, 12-oxophytodienoate reductase isoform 1.","Proteins","2005","61(1)","206-8","CESG","1vji"
"886","16076958","structure","Maxwell KL, Reed P, Zhang RG, Beasley S, Walmsley AR, Curtis FA, Joachimiak A, Edwards AM, Sharples GJ","Functional similarities between phage lambda Orf and Escherichia coli RecFOR in initiation of genetic exchange.","Proceedings of the National Academy of Sciences of the United States of America","2005","102(32)","11260-5","MCSG","1pc6"
"889","16049913","structure","Sanders DA, Walker JR, Skarina T, Savchenko A","The X-ray crystal structure of PA3566 from Pseudomonas aureginosa at 1.8 A resolution.","Proteins","2005","61(1)","209-12","MCSG","1x7v"
"863","16046629","structure","Singh S, Tonelli M, Tyler RC, Bahrami A, Lee MS, Markley JL","Three-dimensional structure of the AAH26994.1 protein from Mus musculus, a putative eukaryotic Urm1.","Protein Science","2005","14(8)","2095-102","CESG","1xo3"
"894","16039594","structure","Jain D, Kim Y, Maxwell KL, Beasley S, Zhang R, Gussin GN, Edwards AM, Darst SA","Crystal structure of bacteriophage lambda cII and its DNA complex.","Molecular Cell","2005","19(2)","259-69","MCSG","1zpq"
"1522","16021622","structure","Badger J, Sauder JM, Adams JM, Antonysamy S, Bain K, Bergseid MG, Buchanan SG, Buchanan MD, Batiyenko Y, Christopher JA, Emtage S, Eroshkina A, Feil I, Furlong EB, Gajiwala KS, Gao X, He D, Hendle J, Huber A, Hoda K, Kearins P, Kissinger C, Laubert B, Lewis HA, Lin J, Loomis K, Lorimer D, Louie G, Maletic M, Marsh CD, Miller I, Molinari J, Muller-Dieckmann HJ, Newman JM, Noland BW, Pagarigan B, Park F, Peat TS, Post KW, Radojicic S, Ramos A, Romero R, Rutter ME, Sanderson WE, Schwinn KD, Tresser J, Winhoven J, Wright TA, Wu L, Xu J, Harris TJ","Structural analysis of a set of proteins resulting from a bacterial genomics project.","Proteins","2005","60(4)","787-96","NYSGXRC",""
"813","16001405","note","Han GW, Schwarzenbacher R, McMullan D, Abdubek P, Ambing E, Axelrod H, Biorac T, Canaves JM, Chiu HJ, Dai X, Deacon AM, DiDonato M, Elsliger MA, Godzik A, Grittini C, Grzechnik SK, Hale J, Hampton E, Haugen J, Hornsby M, Jaroszewski L, Klock HE, Koesema E, Kreusch A, Kuhn P, Lesley SA, McPhillips TM, Miller MD, Moy K, Nigoghossian E, Paulsen J, Quijano K, Reyes R, Spraggon G, Stevens RC, van den Bedem H, Velasquez J, Vincent J, White A, Wolf G, Xu Q, Hodgson KO, Wooley J, Wilson IA","Crystal structure of an Apo mRNA decapping enzyme (DcpS) from Mouse at 1.83 A resolution.","Proteins","2005","60(4)","797-802","JCSG","1vlr"
"922","15992821","structure","Pineda-Lucena A, Ho CS, Mao DY, Sheng Y, Laister RC, Muhandiram R, Lu Y, Seet BT, Katz S, Szyperski T, Penn LZ, Arrowsmith CH","A structure-based model of the c-Myc/Bin1 protein interaction shows alternative splicing of Bin1 and c-Myc phosphorylation are key binding determinants.","Journal of Molecular Biology","2005","351(1)","182-94","NESG","1muz 1mv0 1mv3"
"876","15987910","structure","Grundner C, Gay LM, Alber T","Mycobacterium tuberculosis serine/threonine kinases PknB, PknD, PknE, and PknF phosphorylate multiple FHA domains.","Protein Science","2005","14(7)","1918-21","TB",""
"779","15987893","structure","Peterson FC, Lytle BL, Sampath S, Vinarov D, Tyler E, Shahan M, Markley JL, Volkman BF","Solution structure of thioredoxin h1 from Arabidopsis thaliana.","Protein Science","2005","14(8)","2195-200","CESG","1xfl"
"785","15979091","structure","Liu J, Huang C, Shin DH, Yokota H, Jancarik J, Kim JS, Adams PD, Kim R, Kim SH","Crystal structure of a heat-inducible transcriptional repressor HrcA from Thermotoga maritima: structural insight into DNA binding and dimerization.","Journal of Molecular Biology","2005","350(5)","987-96","BSGC","1stz"
"925","15965736","structure","Penhoat CH, Li Z, Atreya HS, Kim S, Yee A, Xiao R, Murray D, Arrowsmith CH, Szyperski T","NMR solution structure of Thermotoga maritima protein TM1509 reveals a Zn-metalloprotease-like tertiary structure.","Journal of Structural and Functional Genomics","2005","6(1)","51-62","NESG","1tvi"
"772","15939017","structure","Robinson-Rechavi M, Godzik A","Structural genomics of thermotoga maritima proteins shows that contact order is a major determinant of protein thermostability.","Structure","2005","13(6)","857-60","JCSG",""
"821","15937903","note","Columbus L, Peti W, Etezady-Esfarjani T, Herrmann T, Wüthrich K","NMR structure determination of the conserved hypothetical protein TM1816 from Thermotoga maritima.","Proteins","2005","60(3)","552-7","JCSG","1t3v"
"789","15937186","structure","Oganesyan V, Oganesyan N, Adams PD, Jancarik J, Yokota HA, Kim R, Kim SH","Crystal structure of the \"PhoU-like\" phosphate uptake regulator from Aquifex aeolicus.","Journal of Bacteriology","2005","187(12)","4238-44","BSGC","1t8b"
"928","15930006","structure","Liu G, Li Z, Chiang Y, Acton T, Montelione GT, Murray D, Szyperski T","High-quality homology models derived from NMR and X-ray structures of E. coli proteins YgdK and Suf E suggest that all members of the YgdK/Suf E protein family are enhancers of cysteine desulfurases.","Protein Science","2005","14(6)","1597-608","NESG","1ni7"
"893","15906318","structure","Zhang R, Minh T, Lezondra L, Korolev S, Moy SF, Collart F, Joachimiak A","1.6 A crystal structure of YteR protein from Bacillus subtilis, a predicted lyase.","Proteins","2005","60(3)","561-5","MCSG","1nc5"
"877","15876368","structure","Goulding CW, Apostol MI, Sawaya MR, Phillips M, Parseghian A, Eisenberg D","Regulation by oligomerization in a mycobacterial folate biosynthetic enzyme.","Journal of Molecular Biology","2005","349(1)","61-72","TB",""
"924","15858269","structure","Benach J, Edstrom WC, Lee I, Das K, Cooper B, Xiao R, Liu J, Rost B, Acton TB, Montelione GT, Hunt JF","The 2.35 A structure of the TenA homolog from Pyrococcus furiosus supports an enzymatic function in thiamine metabolism.","Acta Crystallographica Section D: Biological Crystallography","2005","61(Pt 5)","589-98","NESG","1rtw"
"802","15822125","note","Mathews I, Schwarzenbacher R, McMullan D, Abdubek P, Ambing E, Axelrod H, Biorac T, Canaves JM, Chiu HJ, Deacon AM, DiDonato M, Elsliger MA, Godzik A, Grittini C, Grzechnik SK, Hale J, Hampton E, Han GW, Haugen J, Hornsby M, Jaroszewski L, Klock HE, Koesema E, Kreusch A, Kuhn P, Lesley SA, Levin I, Miller MD, Moy K, Nigoghossian E, Ouyang J, Paulsen J, Quijano K, Reyes R, Spraggon G, Stevens RC, van den Bedem H, Velasquez J, Vincent J, White A, Wolf G, Xu Q, Hodgson KO, Wooley J, Wilson IA","Crystal structure of S-adenosylmethionine:tRNA ribosyltransferase-isomerase (QueA) from Thermotoga maritima at 2.0 A resolution reveals a new fold.","Proteins","2005","59(4)","869-74","JCSG","1vky"
"817","15822122","note","Levin I, Miller MD, Schwarzenbacher R, McMullan D, Abdubek P, Ambing E, Biorac T, Cambell J, Canaves JM, Chiu HJ, Deacon AM, DiDonato M, Elsliger MA, Godzik A, Grittini C, Grzechnik SK, Hale J, Hampton E, Han GW, Haugen J, Hornsby M, Jaroszewski L, Karlak C, Klock HE, Koesema E, Kreusch A, Kuhn P, Lesley SA, Morse A, Moy K, Nigoghossian E, Ouyang J, Page R, Quijano K, Reyes R, Robb A, Sims E, Spraggon G, Stevens RC, van den Bedem H, Velasquez J, Vincent J, Wang X, West B, Wolf G, Xu Q, Zagnitko O, Hodgson KO, Wooley J, Wilson IA","Crystal structure of an indigoidine synthase A (IndA)-like protein (TM1464) from Thermotoga maritima at 1.90 A resolution reveals a new fold.","Proteins","2005","59(4)","864-8","JCSG","1vkm"
"782","15815978","structure","Liu J, Oganesyan N, Shin DH, Jancarik J, Yokota H, Kim R, Kim SH","Structural characterization of an iron-sulfur cluster assembly protein IscU in a zinc-bound form.","Proteins","2005","59(4)","875-81","BSGC",""
"874","15805589","structure","Kantardjieff KA, Vasquez C, Castro P, Warfel NM, Rho BS, Lekin T, Kim CY, Segelke BW, Terwilliger TC, Rupp B","Structure of pyrR (Rv1379) from Mycobacterium tuberculosis: a persistence gene and protein drug target.","Acta Crystallographica Section D: Biological Crystallography","2005","61(Pt 4)","355-64","TB",""
"791","15753098","structure","Shin DH, Oganesyan N, Jancarik J, Yokota H, Kim R, Kim SH","Crystal structure of a nicotinate phosphoribosyltransferase from Thermoplasma acidophilum.","Journal of Biological Chemistry","2005","280(18)","18326-35","BSGC","1ytd"
"800","15741346","structure","Song J, Tyler RC, Wrobel RL, Frederick RO, Vojtek FC, Jeon WB, Lee MS, Markley JL","Solution structure of At3g04780.1-des15, an Arabidopsis thaliana ortholog of the C-terminal domain of human thioredoxin-like protein.","Protein Science","2005","14(4)","1059-63","CESG","1xoy"
"879","15735341","structure","Müller P, Sawaya MR, Pashkov I, Chan S, Nguyen C, Wu Y, Perry LJ, Eisenberg D","The 1.70 angstroms X-ray crystal structure of Mycobacterium tuberculosis phosphoglycerate mutase.","Acta Crystallographica Section D: Biological Crystallography","2005","61(Pt 3)","309-15","TB",""
"932","15735338","structure","Strokopytov BV, Fedorov A, Mahoney NM, Kessels M, Drubin DG, Almo SC","Phased translation function revisited: structure solution of the cofilin-homology domain from yeast actin-binding protein 1 using six-dimensional searches.","Acta Crystallographica Section D: Biological Crystallography","2005","61(Pt 3)","285-93","NYSGXRC","1hqz"
"887","15735308","structure","Singh S, Korolev S, Koroleva O, Zarembinski T, Collart F, Joachimiak A, Christendat D","Crystal structure of a novel shikimate dehydrogenase from Haemophilus influenzae.","Journal of Biological Chemistry","2005","280(17)","17101-8","MCSG","1npy"
"784","15728358","structure","Kim JS, DeGiovanni A, Jancarik J, Adams PD, Yokota H, Kim R, Kim SH","Crystal structure of DNA sequence specificity subunit of a type I restriction-modification enzyme and its functional implications.","Proceedings of the National Academy of Sciences of the United States of America","2005","102(9)","3248-53","BSGC","1yf2"
"794","15723348","note","Peti W, Herrmann T, Zagnitko O, Grzechnik SK, Wüthrich K","NMR structure of the conserved hypothetical protein TM0979 from Thermotoga maritima.","Proteins","2005","59(2)","387-90","JCSG",""
"933","15722447","structure","Kumaran D, Eswaramoorthy S, Studier FW, Swaminathan S","Structure and mechanism of ADP-ribose-1'-monophosphatase (Appr-1'-pase), a ubiquitous cellular processing enzyme.","Protein Science","2005","14(3)","719-26","NYSGXRC","1njr"
"786","15716271","structure","Liu J, Lou Y, Yokota H, Adams PD, Kim R, Kim SH","Crystal structure of a PhoU protein homologue: a new class of metalloprotein containing multinuclear iron clusters.","Journal of Biological Chemistry","2005","280(16)","15960-6","BSGC","1sum"
"302","15701519","structure","Arndt  JW, Gu  J, Jaroszewski  L, Schwarzenbacher  R, Hanson  MA, Lebeda  FJ, Stevens  RC","The structure of the neurotoxin-associated protein HA33/A from Clostridium botulinum suggests a reoccurring beta-trefoil fold in the progenitor toxin complex.","Journal of Molecular Biology","2005","346","1083-93","JCSG","1ybi"
"880","15695811","structure","Card GL, Peterson NA, Smith CA, Rupp B, Schick BM, Baker EN","The crystal structure of Rv1347c, a putative antibiotic resistance protein from Mycobacterium tuberculosis, reveals a GCN5-related fold and suggests an alternative function in siderophore biosynthesis.","Journal of Biological Chemistry","2005","280(14)","13978-86","TB",""
"897","15670594","structure","Varrot A, Yip VL, Li Y, Rajan SS, Yang X, Anderson WF, Thompson J, Withers SG, Davies GJ","NAD+ and metal-ion dependent hydrolysis by family 4 glycosidases: structural insight into specificity for phospho-beta-D-glucosides.","Journal of Molecular Biology","2005","346(2)","423-35","MCSG","1s6y"
"927","15668381","structure","Forouhar F, Yang Y, Kumar D, Chen Y, Fridman E, Park SW, Chiang Y, Acton TB, Montelione GT, Pichersky E, Klessig DF, Tong L","Structural and biochemical studies identify tobacco SABP2 as a methyl salicylate esterase and implicate it in plant innate immunity.","Proceedings of the National Academy of Sciences of the United States of America","2005","102(5)","1773-8","NESG","1y7h 1y7i 1xkl"
"878","15668249","structure","Dey S, Grant GA, Sacchettini JC","Crystal structure of Mycobacterium tuberculosis D-3-phosphoglycerate dehydrogenase: extreme asymmetry in a tetramer of identical subunits.","Journal of Biological Chemistry","2005","280(15)","14892-9","TB",""
"814","15657930","note","Han GW, Schwarzenbacher R, Page R, Jaroszewski L, Abdubek P, Ambing E, Biorac T, Canaves JM, Chiu HJ, Dai X, Deacon AM, DiDonato M, Elsliger MA, Godzik A, Grittini C, Grzechnik SK, Hale J, Hampton E, Haugen J, Hornsby M, Klock HE, Koesema E, Kreusch A, Kuhn P, Lesley SA, Levin I, McMullan D, McPhillips TM, Miller MD, Morse A, Moy K, Nigoghossian E, Ouyang J, Paulsen J, Quijano K, Reyes R, Sims E, Spraggon G, Stevens RC, van den Bedem H, Velasquez J, Vincent J, von Delft F, Wang X, West B, White A, Wolf G, Xu Q, Zagnitko O, Hodgson KO, Wooley J, Wilson IA","Crystal structure of an alanine-glyoxylate aminotransferase from Anabaena sp. at 1.70 A resolution reveals a noncovalently linked PLP cofactor.","Proteins","2005","58(4)","971-5","JCSG","1vjo"
"805","15651027","note","Xu Q, Schwarzenbacher R, McMullan D, Abdubek P, Ambing E, Biorac T, Canaves JM, Chiu HJ, Dai X, Deacon AM, DiDonato M, Elsliger MA, Godzik A, Grittini C, Grzechnik SK, Hampton E, Hornsby M, Jaroszewski L, Klock HE, Koesema E, Kreusch A, Kuhn P, Lesley SA, Levin I, Miller MD, Morse A, Moy K, Ouyang J, Page R, Quijano K, Reyes R, Robb A, Sims E, Spraggon G, Stevens RC, van den Bedem H, Velasquez J, Vincent J, von Delft F, Wang X, West B, White A, Wolf G, Zagnitko O, Hodgson KO, Wooley J, Wilson IA","Crystal structure of a formiminotetrahydrofolate cyclodeaminase (TM1560) from Thermotoga maritima at 2.80 A resolution reveals a new fold.","Proteins","2005","58(4)","976-81","JCSG","1o5h"
"896","15642263","structure","Nelson CA, Pekosz A, Lee CA, Diamond MS, Fremont DH","Structure and intracellular targeting of the SARS-coronavirus Orf7a accessory protein.","Structure","2005","13(1)","75-85","MCSG","1xak"
"934","15642260","structure","Sickmier EA, Brekasis D, Paranawithana S, Bonanno JB, Paget MS, Burley SK, Kielkopf CL","X-ray structure of a Rex-family repressor/NADH complex insights into the mechanism of redox sensing.","Structure","2005","13(1)","43-54","NYSGXRC","1xcb"
"822","15624212","note","Arndt JW, Schwarzenbacher R, Page R, Abdubek P, Ambing E, Biorac T, Canaves JM, Chiu HJ, Dai X, Deacon AM, DiDonato M, Elsliger MA, Godzik A, Grittini C, Grzechnik SK, Hale J, Hampton E, Han GW, Haugen J, Hornsby M, Klock HE, Koesema E, Kreusch A, Kuhn P, Jaroszewski L, Lesley SA, Levin I, McMullan D, McPhillips TM, Miller MD, Morse A, Moy K, Nigoghossian E, Ouyang J, Peti WS, Quijano K, Reyes R, Sims E, Spraggon G, Stevens RC, van den Bedem H, Velasquez J, Vincent J, von Delft F, Wang X, West B, White A, Wolf G, Xu Q, Zagnitko O, Hodgson KO, Wooley J, Wilson IA","Crystal structure of an alpha/beta serine hydrolase (YDR428C) from Saccharomyces cerevisiae at 1.85 A resolution.","Proteins","2005","58(3)","755-8","JCSG","1vkh"
"916","15616961","note","Shen Y, Goldsmith-Fischman S, Atreya HS, Acton T, Ma L, Xiao R, Honig B, Montelione GT, Szyperski T","NMR structure of the 18 kDa protein CC1736 from Caulobacter crescentus identifies a member of the START domain superfamily and suggests residues mediating substrate specificity.","Proteins","2005","58(3)","747-50","NESG","1t17 1bv1 3pmg 1jss 1fvz 1sjw"
"891","15609338","structure","Cuff ME, Miller DJ, Korolev S, Xu X, Anderson WF, Edwards A, Joachimiak A, Savchenko A","Crystal structure of a predicted precorrin-8x methylmutase from Thermoplasma acidophilum.","Proteins","2005","58(3)","751-4","MCSG","1ou0"
"918","15608123","note","Gaspar JA, Liu C, Vassall KA, Meglei G, Stephen R, Stathopulos PB, Pineda-Lucena A, Wu B, Yee A, Arrowsmith CH, Meiering EM","A novel member of the YchN-like fold: solution structure of the hypothetical protein Tm0979 from Thermotoga maritima.","Protein Science","2005","14(1)","216-23","NESG","1x9a"
"871","15562512","structure","Das D, Oganesyan N, Yokota H, Pufan R, Kim R, Kim SH","Crystal structure of the conserved hypothetical protein MPN330 (GI: 1674200) from Mycoplasma pneumoniae.","Proteins","2005","58(2)","504-8","BSGC",""
"898","15520015","structure","Wu R, Skaar EP, Zhang R, Joachimiak G, Gornicki P, Schneewind O, Joachimiak A","Staphylococcus aureus IsdG and IsdI, heme-degrading enzymes with structural similarity to monooxygenases.","Journal of Biological Chemistry","2005","280(4)","2840-6","MCSG","1sqe"
"792","15468322","structure","Wang W, Kim R, Yokota H, Kim SH","Crystal structure of flavin binding to FAD synthetase of Thermotoga maritima.","Proteins","2005","58(1)","246-8","BSGC","1mrz"
"769","15468319","structure","Malone TE, Madson SE, Wrobel RL, Jeon WB, Rosenberg NS, Johnson KA, Bingman CA, Smith DW, Phillips GN, Markley JL, Fox BG","X-ray structure of Arabidopsis At2g06050, 12-oxophytodienoate reductase isoform 3.","Proteins","2005","58(1)","243-5","CESG","1q45"
"954","","structure","Chandonia JM, Brenner SE","Update on the Pfam5000 Strategy for Selection of Structural Genomics Targets","Books and Proceedings","2005","1","751-5","BSGC",""
"1084","15782178","structure","Vinarov DA, Lytle BL, Peterson FC, Tyler EM, Volkman BF, Markley JL","Cell-free protein production and labeling protocol for NMR-based structural proteomics.","Nature Methods","2004","1(2)","149-53","CESG","1se9"
"1062","15756462","structure","Sugimori N, Torizawa T, Aceti DJ, Thao S, Markley JL, Kainosho M","(1)H, (13)C and (15)N backbone assignment of a 32 kDa hypothetical protein from Arabidopsis thaliana, At3g16450.1.","Journal of Biomolecular NMR","2004","30(3)","357-8","CESG","2jz4"
"888","15704011","structure","Sanishvili R, Pennycooke M, Gu J, Xu X, Joachimiak A, Edwards AM, Christendat D","Crystal structure of the hypothetical protein TA1238 from Thermoplasma acidophilum: a new type of helical super-bundle","Journal of Structural and Functional Genomics","2004","5(4)","231-40","MCSG","1nig"
"1091","15702529","structure","Song J, Vinarov D, Tyler EM, Shahan MN, Tyler RC, Markley JL","Hypothetical protein At2g24940.1 from Arabidopsis thaliana has a cytochrome b5 like fold.","Journal of Biomolecular NMR","2004","30(2)","215-8","CESG","1t0g"
"303","15630565","structure","Song J, Zhao Q, Thao S, Frederick RO, Markley JL","Solution structure of a calmodulin-like calcium-binding domain from Arabidopsis thaliana.","Journal of Biomolecular NMR","2004","30(4)","451-6","CESG","1tiz"
"1049","15610013","structure","Williams WA, Zhang RG, Zhou M, Joachimiak G, Gornicki P, Missiakas D, Joachimiak A","The membrane-associated lipoprotein-9 GmpC from Staphylococcus aureus binds the dipeptide GlyMet via side chain interactions.","Biochemistry","2004","43(51)","16193-202","MCSG","1p99"
"1039","15581359","structure","Rajan SS, Yang X, Shuvalova L, Collart F, Anderson WF","YfiT from Bacillus subtilis is a probable metal-dependent hydrolase with an unusual four-helix bundle topology","Biochemistry","2004","43(49)","15472-9","MCSG","1rxq"
"966","15530359","structure","Pullen KE, Ng HL, Sung PY, Good MC, Smith SM, Alber T","An alternate conformation and a third metal in PstP/Ppp, the M. tuberculosis PP2C-Family Ser/Thr protein phosphatase.","Structure","2004","12(11)","1947-54","TB",""
"1008","15522305","structure","Ramelot TA, Cort JR, Goldsmith-Fischman S, Kornhaber GJ, Xiao R, Shastry R, Acton TB, Honig B, Montelione GT, Kennedy MA","Solution NMR structure of the iron-sulfur cluster assembly protein U (IscU) with zinc bound at the active site.","Journal of Molecular Biology","2004","344(2)","567-83","NESG","1r9p 1q48"
"1007","15522304","structure","Goldsmith-Fischman S, Kuzin A, Edstrom WC, Benach J, Shastry R, Xiao R, Acton TB, Honig B, Montelione GT, Hunt JF","The SufE sulfur-acceptor protein contains a conserved core structure that mediates interdomain interactions in a variety of redox protein complexes.","Journal of Molecular Biology","2004","344(2)","549-65","NESG","1mzg"
"1050","15468321","structure","Brunzelle JS, Wu R, Korolev SV, Collart FR, Joachimiak A, Anderson WF","Crystal structure of Bacillus subtilis YdaF protein: a putative ribosomal N-acetyltransferase","Proteins","2004","57(4)","850-853","MCSG","1nsl"
"1112","15468318","structure","Tempel W, Liu ZJ, Schubot FD, Shah A, Weinberg MV, Jenney FE, Arendall WB, Adams MW, Richardson JS, Richardson DC, Rose JP, Wang BC","Structural genomics of Pyrococcus furiosus: X-ray crystallography reveals 3D domain swapping in rubrerythrin.","Proteins","2004","57(4)","878-82","SECSG",""
"1043","15458638","structure","Janda I, Devedjiev Y, Derewenda U, Dauter Z, Bielnicki J, Cooper DR, Graf PC, Joachimiak A, Jakob U, Derewenda ZS","The crystal structure of the reduced, Zn2+-bound form of the B. subtilis Hsp33 chaperone and its implications for the activation mechanism.","Structure","2004","12(10)","1901-7","MCSG","1vzy"
"1098","15452777","structure","Skjeldal L, Peterson FC, Doreleijers JF, Moe LA, Pikus JD, Westler WM, Markley JL, Volkman BF, Fox BG","Solution structure of T4moC, the Rieske ferredoxin component of the toluene 4-monooxygenase complex.","Journal of Biological Inorganic Chemistry","2004","9(8)","945-53","CESG","1sjg"
"959","15452442","note","Powers R, Acton TB, Chiang Y, Paranji R, Cort JR, Kennedy MA, Liu J, Ma L, Rost B, Montelione GT ","1H, 13C, and 15N assignments for the Archaeglobus fulgidis protein AF2095","Journal of Biomolecular NMR","2004","1","107-108","NESG","1rzw"
"1036","15451668","structure","Devedjiev Y, Surendranath Y, Derewenda U, Gabrys A, Cooper DR, Zhang RG, Lezondra L, Joachimiak A, Derewenda ZS","The structure and ligand binding properties of the B. subtilis YkoF gene product, a member of a novel family of thiamin/HMP-binding proteins","Journal of Molecular Biology","2004","343(2)","395-406","MCSG","1s7h"
"305","15388931","structure","Schormann N, Symersky J, Luo M","Structure of sperm-specific protein SSP-19 from Caenorhabditis elegans.","Acta Crystallographica Section D: Biological Crystallography","2004","60(Pt 10)","1840-5","SECSG",""
"1119","15364906","structure","Lytle BL, Peterson FC, Qiu SH, Luo M, Zhao Q, Markley JL, Volkman BF","Solution structure of a ubiquitin-like domain from tubulin-binding cofactor B.","Journal of Biological Chemistry","2004","279(45)","46787-93","CESG","1t0y"
"1045","15363790","structure","Sanishvili R, Wu R, Kim DE, Watson JD, Collart F, Joachimiak A","Crystal structure of Bacillus subtilis YckF: structural and functional evolution.","Journal of Structural Biology","2004","148(1)","98-109","MCSG","1m3s"
"1038","15341727","structure","Rajan SS, Yang X, Collart F, Yip VL, Withers SG, Varrot A, Thompson J, Davies GJ, Anderson WF","Novel catalytic mechanism of glycoside hydrolysis based on the structure of an NAD+/Mn2+ -dependent phospho-alpha-glucosidase from Bacillus subtilis","Structure","2004","12(9)","1619-29","MCSG","1u8x 1nrh"
"1113","15333932","structure","Symersky J, Zhang Y, Schormann N, Li S, Bunzel R, Pruett P, Luan CH, Luo M","Structural genomics of Caenorhabditis elegans: structure of the BAG domain.","Acta Crystallographica Section D: Biological Crystallography","2004","60(Pt 9)","1606-10","SECSG",""
"1132","15333931","structure","Gorman J, Shapiro L","Structure of serine acetyltransferase from Haemophilus influenzae Rd.","Acta Crystallographica Section D: Biological Crystallography","2004","60(Pt 9)","1600-5","NYSGXRC","1s80"
"1106","15331784","structure","Shin DH, Lou Y, Jancarik J, Yokota H, Kim R, Kim SH","Crystal structure of YjeQ from Thermotoga maritima contains a circularly permuted GTPase domain.","Proceedings of the National Academy of Sciences of the United States of America","2004","101(36)","13198-203","BSGC",""
"1121","15326608","structure","Blommel PG, Smith DW, Bingman CA, Dyer DH, Rayment I, Holden HM, Fox BG, Phillips GN","Crystal structure of gene locus At3g16990 from Arabidopsis thaliana.","Proteins","2004","57(1)","221-2","CESG","2f2g"
"1122","15326607","structure","Bingman CA, Johnson KA, Peterson FC, Frederick RO, Zhao Q, Thao S, Fox BG, Volkman BF, Jeon WB, Smith DW, Newman CS, Ulrich EL, Hegeman A, Sussman MR, Markley JL, Phillips GN","Crystal structure of the protein from gene At3g17210 of Arabidopsis thaliana.","Proteins","2004","57(1)","218-20","CESG","1q4r"
"1123","15326606","note","Miller MD, Schwarzenbacher R, von Delft F, Abdubek P, Ambing E, Biorac T, Brinen LS, Canaves JM, Cambell J, Chiu HJ, Dai X, Deacon AM, DiDonato M, Elsliger MA, Eshagi S, Floyd R, Godzik A, Grittini C, Grzechnik SK, Hampton E, Jaroszewski L, Karlak C, Klock HE, Koesema E, Kovarik JS, Kreusch A, Kuhn P, Lesley SA, Levin I, McMullan D, McPhillips TM, Morse A, Moy K, Ouyang J, Page R, Quijano K, Robb A, Spraggon G, Stevens RC, van den Bedem H, Velasquez J, Vincent J, Wang X, West B, Wolf G, Xu Q, Hodgson KO, Wooley J, Wilson IA","Crystal structure of a tandem cystathionine-beta-synthase (CBS) domain protein (TM0935) from Thermotoga maritima at 1.87 A resolution.","Proteins","2004","57(1)","213-7","JCSG","1o50"
"1118","15317023","structure","Smith DW, Johnson KA, Bingman CA, Aceti DJ, Blommel PG, Wrobel RL, Frederick RO, Zhao Q, Sreenath H, Fox BG, Volkman BF, Jeon WB, Newman CS, Ulrich EL, Hegeman AD, Kimball T, Thao S, Sussman MR, Markley JL, Phillips GN","Crystal structure of At2g03760, a putative steroid sulfotransferase from Arabidopsis thaliana.","Proteins","2004","57(4)","854-7","CESG","1q44"
"1105","15312775","structure","Shin DH, Brandsen J, Jancarik J, Yokota H, Kim R, Kim SH","Structural analyses of peptide release factor 1 from Thermotoga maritima reveal domain flexibility required for its interaction with the ribosome.","Journal of Molecular Biology","2004","341(1)","227-39","BSGC","1rq0"
"1117","15312764","structure","Chen L, Chen LR, Zhou XYE, Wang Y, Kahsai MA, Clark AT, Edmondson SP, Liu ZJ, Rose JP, Wang BC, Meehan EJ, Shriver JW","The hyperthermophile protein Sso10a is a dimer of winged helix DNA-binding domains linked by an antiparallel coiled coil rod.","Journal of Molecular Biology","2004","341(1)","73-91","SECSG",""
"1133","15311924","structure","Dodatko T, Fedorov AA, Grynberg M, Patskovsky Y, Rozwarski DA, Jaroszewski L, Aronoff-Spencer E, Kondraskina E, Irving T, Godzik A, Almo SC","Crystal structure of the actin binding domain of the cyclase-associated protein.","Biochemistry","2004","43(33)","10628-41","NYSGXRC",""
"1026","15304227","note","Greenwald J, Vega ME, Allendorph GP, Fischer WH, Vale W, Choe S","A flexible activin explains the membrane-dependent cooperative assembly of TGF-beta family receptors.","Molecular Cell","2004","15(3)","485-9","JCSG","1s4y"
"1110","15301527","structure","Agrawal N, Lesley SA, Kuhn P, Kohen A","Mechanistic studies of a flavin-dependent thymidylate synthase.","Biochemistry","2004","43(32)","10295-301","JCSG",""
"1057","15281135","structure","Chen S, Shin DH, Pufan R, Kim R, Kim SH","Crystal structure of methenyltetrahydrofolate synthetase from Mycoplasma pneumoniae (GI: 13508087) at 2.2 A resolution.","Proteins","2004","56(4)","839-43","BSGC","1lkz"
"963","15276840","structure","Chan S, Segelke B, Lekin T, Krupka H, Cho US, Kim MY, So M, Kim CY, Naranjo CM, Rogers YC, Park MS, Waldo GS, Pashkov I, Cascio D, Perry JL, Sawaya MR","Crystal structure of the Mycobacterium tuberculosis dUTPase: insights into the catalytic mechanism.","Journal of Molecular Biology","2004","341(2)","503-17","TB",""
"1051","15269205","structure","Sanishvili R, Beasley S, Skarina T, Glesne D, Joachimiak A, Edwards A, Savchenko A","The crystal structure of Escherichia coli MoaB suggests a probable role in molybdenum cofactor synthesis","Journal of Biological Chemistry","2004","279(40)","42139-46","MCSG","1mkz"
"1108","15260978","structure","Zhang KY, Card GL, Suzuki Y, Artis DR, Fong D, Gillette S, Hsieh D, Neiman J, West BL, Zhang C, Milburn MV, Kim SH, Schlessinger J, Bollag G","A glutamine switch mechanism for nucleotide selectivity by phosphodiesterases.","Molecular Cell","2004","15(2)","279-86","BSGC",""
"965","15258569","structure","Mougous JD, Petzold CJ, Senaratne RH, Lee DH, Akey DL, Lin FL, Munchel SE, Pratt MR, Riley LW, Leary JA, Berger JM, Bertozzi CR","Identification, function and structure of the mycobacterial sulfotransferase that initiates sulfolipid-1 biosynthesis.","Nature Structural & Molecular Biology","2004","11(8)","721-9","TB",""
"1013","15243193","note","Shen Y, Atreya HS, Xiao R, Acton TB, Shastry R, Ma L, Montelione GT, Szyperski T","Resonance assignments for the 18 kDa protein CC1736 from Caulobacter crescentus.","Journal of Biomolecular NMR","2004","29","549-50","NESG","1t17"
"1048","15242591","structure","Zhang R, Wu R, Joachimiak G, Mazmanian SK, Missiakas DM, Gornicki P, Schneewind O, Joachimiak A","Structures of sortase B from Staphylococcus aureus and Bacillus anthracis reveal catalytic amino acid triad in the active site","Structure","2004","12(7)","1147-56","MCSG","1ng5"
"1040","15237973","structure","Yip VL, Varrot A, Davies GJ, Rajan SS, Yang X, Thompson J, Anderson WF, Withers SG","An unusual mechanism of glycoside hydrolysis involving redox and elimination steps by a family 4 beta-glycosidase from Thermotoga maritima.","Journal of the American Chemical Society","2004","126(27)","8354-5","MCSG","1nrh 1u8x"
"1126","15229897","note","Levin I, Schwarzenbacher R, McMullan D, Abdubek P, Ambing E, Biorac T, Cambell J, Canaves JM, Chiu HJ, Dai X, Deacon AM, DiDonato M, Elsliger MA, Godzik A, Grittini C, Grzechnik SK, Hampton E, Jaroszewski L, Karlak C, Klock HE, Koesema E, Kreusch A, Kuhn P, Lesley SA, McPhillips TM, Miller MD, Morse A, Moy K, Ouyang J, Page R, Quijano K, Reyes R, Robb A, Sims E, Spraggon G, Stevens RC, van den Bedem H, Velasquez J, Vincent J, von Delft F, Wang X, West B, Wolf G, Xu Q, Hodgson KO, Wooley J, Wilson IA","Crystal structure of a putative NADPH-dependent oxidoreductase (GI: 18204011) from mouse at 2.10 A resolution.","Proteins","2004","56(3)","629-33","JCSG","1vj1"
"1066","15229895","note","Xu Q, Schwarzenbacher R, Page R, Sims E, Abdubek P, Ambing E, Biorac T, Brinen LS, Cambell J, Canaves JM, Chiu HJ, Dai X, Deacon AM, DiDonato M, Elsliger MA, Floyd R, Godzik A, Grittini C, Grzechnik SK, Hampton E, Jaroszewski L, Karlak C, Klock HE, Koesema E, Kovarik JS, Kreusch A, Kuhn P, Lesley SA, Levin I, McMullan D, McPhillips TM, Miller MD, Morse A, Moy K, Ouyang J, Quijano K, Reyes R, Rezezadeh F, Robb A, Spraggon G, Stevens RC, van den Bedem H, Velasquez J, Vincent J, von Delft F, Wang X, West B, Wolf G, Hodgson KO, Wooley J, Wilson IA","Crystal structure of an allantoicase (YIR029W) from Saccharomyces cerevisiae at 2.4 A resolution.","Proteins","2004","56(3)","619-24","JCSG","1o59"
"1124","15229894","note","McMullan D, Schwarzenbacher R, Jaroszewski L, von Delft F, Klock HE, Vincent J, Quijano K, Abdubek P, Ambing E, Biorac T, Brinen LS, Canaves JM, Dai X, Deacon AM, DiDonato M, Elsliger MA, Eshaghi S, Floyd R, Godzik A, Grittini C, Grzechnik SK, Hampton E, Karlak C, Koesema E, Kreusch A, Kuhn P, Levin I, McPhillips TM, Miller MD, Morse A, Moy K, Ouyang J, Page R, Reyes R, Rezezadeh F, Robb A, Sims E, Spraggon G, Stevens RC, van den Bedem H, Velasquez J, Wang X, West B, Wolf G, Xu Q, Hodgson KO, Wooley J, Lesley SA, Wilson IA","Crystal structure of a novel Thermotoga maritima enzyme (TM1112) from the cupin family at 1.83 A resolution.","Proteins","2004","56(3)","615-8","JCSG","1o5u"
"1127","15229893","note","Jaroszewski L, Schwarzenbacher R, von Delft F, McMullan D, Brinen LS, Canaves JM, Dai X, Deacon AM, DiDonato M, Elsliger MA, Eshagi S, Floyd R, Godzik A, Grittini C, Grzechnik SK, Hampton E, Levin I, Karlak C, Klock HE, Koesema E, Kovarik JS, Kreusch A, Kuhn P, Lesley SA, McPhillips TM, Miller MD, Morse A, Moy K, Ouyang J, Page R, Quijano K, Reyes R, Rezezadeh F, Robb A, Sims E, Spraggon G, Stevens RC, van den Bedem H, Velasquez J, Vincent J, Wang X, West B, Wolf G, Xu Q, Hodgson KO, Wooley J, Wilson IA","Crystal structure of a novel manganese-containing cupin (TM1459) from Thermotoga maritima at 1.65 A resolution.","Proteins","2004","56(3)","611-4","JCSG","1o5n"
"1053","15229892","note","Bakolitsa C, Schwarzenbacher R, McMullan D, Brinen LS, Canaves JM, Dai X, Deacon AM, Elsliger MA, Eshagi S, Floyd R, Godzik A, Grittini C, Grzechnik SK, Jaroszewski L, Karlak C, Klock HE, Koesema E, Kovarik JS, Kreusch A, Kuhn P, Lesley SA, McPhillips TM, Miller MD, Morse A, Moy K, Ouyang J, Page R, Quijano K, Robb A, Spraggon G, Stevens RC, van den Bedem H, Velasquez J, Vincent J, von Delft F, Wang X, West B, Wolf G, Hodgson KO, Wooley J, Wilson IA","Crystal structure of an orphan protein (TM0875) from Thermotoga maritima at 2.00-A resolution reveals a new fold.","Proteins","2004","56(3)","607-10","JCSG","1o22"
"1021","15213465","note","Almeida MS, Peti W, Wüthrich K","1H-, 13C- and 15N-NMR assignment of the conserved hypothetical protein TM0487 from Thermotoga maritima.","Journal of Biomolecular NMR","2004","29(3)","453-4","JCSG",""
"1101","15213441","note","Etezady-Esfarjani T, Herrmann T, Peti W, Klock HE, Lesley SA, Wüthrich K","NMR structure determination of the hypothetical protein TM1290 from Thermotoga maritima using automated NOESY analysis.","Journal of Biomolecular NMR","2004","29(3)","403-6","JCSG","1rdu"
"1099","15213437","structure","Cornilescu G, Cornilescu CC, Zhao Q, Frederick RO, Peterson FC, Thao S, Markley JL","Solution structure of a homodimeric hypothetical protein, At5g22580, a structural genomics target from Arabidopsis thaliana.","Journal of Biomolecular NMR","2004","29(3)","387-90","CESG","1rjj"
"1103","15213388","structure","Oganesyan V, Pufan R, DeGiovanni A, Yokota H, Kim R, Kim SH","Structure of the putative DNA-binding protein SP_1288 from Streptococcus pyogenes.","Acta Crystallographica Section D: Biological Crystallography","2004","60(Pt 7)","1266-71","BSGC","1s7o"
"1125","15211526","note","Levin I, Schwarzenbacher R, Page R, Abdubek P, Ambing E, Biorac T, Brinen LS, Campbell J, Canaves JM, Chiu HJ, Dai X, Deacon AM, DiDonato M, Elsliger MA, Floyd R, Godzik A, Grittini C, Grzechnik SK, Hampton E, Jaroszewski L, Karlak C, Klock HE, Koesema E, Kovarik JS, Kreusch A, Kuhn P, Lesley SA, McMullan D, McPhillips TM, Miller MD, Morse A, Moy K, Ouyang J, Quijano K, Reyes R, Rezezadeh F, Robb A, Sims E, Spraggon G, Stevens RC, van den Bedem H, Velasquez J, Vincent J, von Delft F, Wang X, West B, Wolf G, Xu Q, Hodgson KO, Wooley J, Wilson IA","Crystal structure of a PIN (PilT N-terminus) domain (AF0591) from Archaeoglobus fulgidus at 1.90 A resolution.","Proteins","2004","56(2)","404-8","JCSG","1o4w"
"1022","15211524","note","Spraggon G, Schwarzenbacher R, Kreusch A, McMullan D, Brinen LS, Canaves JM, Dai X, Deacon AM, Elsliger MA, Eshagi S, Floyd R, Godzik A, Grittini C, Grzechnik SK, Jaroszewski L, Karlak C, Klock HE, Koesema E, Kovarik JS, Kuhn P, McPhillips TM, Miller MD, Morse A, Moy K, Ouyang J, Page R, Quijano K, Rezezadeh F, Robb A, Sims E, Stevens RC, van den Bedem H, Velasquez J, Vincent J, von Delft F, Wang X, West B, Wolf G, Xu Q, Hodgson KO, Wooley J, Lesley SA, Wilson IA","Crystal structure of a methionine aminopeptidase (TM1478) from Thermotoga maritima at 1.9 A resolution.","Proteins","2004","56(2)","396-400","JCSG","1o0x"
"1024","15211523","note","Schwarzenbacher R, von Delft F, Jaroszewski L, Abdubek P, Ambing E, Biorac T, Brinen LS, Canaves JM, Cambell J, Chiu HJ, Dai X, Deacon AM, DiDonato M, Elsliger MA, Eshagi S, Floyd R, Godzik A, Grittini C, Grzechnik SK, Hampton E, Karlak C, Klock HE, Koesema E, Kovarik JS, Kreusch A, Kuhn P, Lesley SA, Levin I, McMullan D, McPhillips TM, Miller MD, Morse A, Moy K, Ouyang J, Page R, Quijano K, Robb A, Spraggon G, Stevens RC, van den Bedem H, Velasquez J, Vincent J, Wang X, West B, Wolf G, Xu Q, Hodgson KO, Wooley J, Wilson IA","Crystal structure of a putative oxalate decarboxylase (TM1287) from Thermotoga maritima at 1.95 A resolution.","Proteins","2004","56(2)","392-5","JCSG","1o4t"
"1032","15211522","note","Heine A, Canaves JM, von Delft F, Brinen LS, Dai X, Deacon AM, Elsliger MA, Eshaghi S, Floyd R, Godzik A, Grittini C, Grzechnik SK, Guda C, Jaroszewski L, Karlak C, Klock HE, Koesema E, Kovarik JS, Kreusch A, Kuhn P, Lesley SA, McMullan D, McPhillips TM, Miller MA, Miller MD, Morse A, Moy K, Ouyang J, Page R, Robb A, Rodrigues K, Schwarzenbacher R, Selby TL, Spraggon G, Stevens RC, van den Bedem H, Velasquez J, Vincent J, Wang X, West B, Wolf G, Hodgson KO, Wooley J, Wilson IA","Crystal structure of O-acetylserine sulfhydrylase (TM0665) from Thermotoga maritima at 1.8 A resolution.","Proteins","2004","56(2)","387-91","JCSG","1o58"
"1115","15211521","structure","Lu S, Symersky J, Li S, Carson M, Chen L, Meehan E, Luo M","Structural genomics of Caenorhabditis elegans: crystal structure of the tropomodulin C-terminal domain.","Proteins","2004","56(2)","384-6","SECSG","1pgv"
"1128","15162497","structure","Xu Q, Schwarzenbacher R, McMullan D, von Delft F, Brinen LS, Canaves JM, Dai X, Deacon AM, Elsliger MA, Eshagi S, Floyd R, Godzik A, Grittini C, Grzechnik SK, Jaroszewski L, Karlak C, Klock HE, Koesema E, Kovarik JS, Kreusch A, Kuhn P, Lesley SA, Levin I, McPhillips TM, Miller MD, Morse A, Moy K, Ouyang J, Page R, Quijano K, Robb A, Spraggon G, Stevens RC, van den Bedem H, Velasquez J, Vincent J, Wang X, West B, Wolf G, Hodgson KO, Wooley J, Wilson IA","Crystal structure of a ribose-5-phosphate isomerase RpiB (TM1080) from Thermotoga maritima at 1.90 A resolution.","Proteins","2004","56(1)","171-5","JCSG","1o1x"
"1070","15162496","note","Santelli E, Schwarzenbacher R, McMullan D, Biorac T, Brinen LS, Canaves JM, Cambell J, Dai X, Deacon AM, Elsliger MA, Eshagi S, Floyd R, Godzik A, Grittini C, Grzechnik SK, Jaroszewski L, Karlak C, Klock HE, Koesema E, Kovarik JS, Kreusch A, Kuhn P, Lesley SA, McPhillips TM, Miller MD, Morse A, Moy K, Ouyang J, Page R, Quijano K, Rezezadeh F, Robb A, Sims E, Spraggon G, Stevens RC, van den Bedem H, Velasquez J, Vincent J, von Delft F, Wang X, West B, Wolf G, Xu Q, Hodgson KO, Wooley J, Wilson IA","Crystal structure of a glycerophosphodiester phosphodiesterase (GDPD) from Thermotoga maritima (TM1621) at 1.60 A resolution.","Proteins","2004","56(1)","167-70","JCSG","1o1z"
"1111","15162483","structure","Canaves JM","Predicted role for the archease protein family based on structural and sequence analysis of TM1083 and MTH1598, two proteins structurally characterized through structural genomics efforts.","Proteins","2004","56(1)","19-27","JCSG",""
"1046","15159570","structure","Janda I, Devedjiev Y, Cooper D, Chruszcz M, Derewenda U, Gabrys A, Minor W, Joachimiak A, Derewenda ZS","Harvesting the high-hanging fruit: the structure of the YdeN gene product from Bacillus subtilis at 1.8 angstroms resolution","Acta Crystallographica Section D: Biological Crystallography","2004","60(Pt 6)","1101-7","MCSG","1uxo"
"1134","15155948","structure","Patel SD, Rajala MW, Rossetti L, Scherer PE, Shapiro L","Disulfide-dependent multimeric assembly of resistin family hormones.","Science","2004","304(5674)","1154-8","NYSGXRC","1rh7"
"995","15152082","note","Blanco FJ, Yee A, Campos-Olivas R, Ortiz AR, Devos D, Valencia A, Arrowsmith CH, Rico M","Solution structure of the hypothetical protein Mth677 from Methanobacterium thermoautotrophicum: a novel alpha+beta fold.","Protein Science","2004","13(6)","1458-65","NESG","1pu1"
"1135","15150269","structure","Mohri K, Vorobiev S, Fedorov AA, Almo SC, Ono S","Identification of functional residues on Caenorhabditis elegans actin-interacting protein 1 (UNC-78) for disassembly of actin depolymerizing factor/cofilin-bound actin filaments.","Journal of Biological Chemistry","2004","279(30)","31697-707","NYSGXRC","1nr0"
"1100","15146506","structure","Liu J, Yokota H, Kim R, Kim SH","A conserved hypothetical protein from Mycoplasma genitalium shows structural homology to nusb proteins.","Proteins","2004","55(4)","1082-6","BSGC",""
"1023","15146505","note","Spraggon G, Schwarzenbacher R, Kreusch A, Lee CC, Abdubek P, Ambing E, Biorac T, Brinen LS, Canaves JM, Cambell J, Chiu HJ, Dai X, Deacon AM, DiDonato M, Elsliger MA, Eshagi S, Floyd R, Godzik A, Grittini C, Grzechnik SK, Hampton E, Jaroszewski L, Karlak C, Klock HE, Koesema E, Kovarik JS, Kuhn P, Levin I, McMullan D, McPhillips TM, Miller MD, Morse A, Moy K, Ouyang J, Page R, Quijano K, Robb A, Stevens RC, van den Bedem H, Velasquez J, Vincent J, von Delft F, Wang X, West B, Wolf G, Xu Q, Hodgson KO, Wooley J, Lesley SA, Wilson IA","Crystal structure of an Udp-n-acetylmuramate-alanine ligase MurC (TM0231) from Thermotoga maritima at 2.3 A resolution.","Proteins","2004","55(4)","1078-81","JCSG","1j6u"
"304","15146477","structure","Chen S, Jancrick J, Yokota H, Kim R, Kim SH","Crystal structure of a protein associated with cell division from Mycoplasma pneumoniae (GI: 13508053): a novel fold with a conserved sequence motif.","Proteins","2004","55(4)","785-91","BSGC",""
"360","15136047","structure","Good MC, Greenstein AE, Young TA, Ng HL, Alber T","Sensor domain of the Mycobacterium tuberculosis receptor Ser/Thr protein kinase, PknD, forms a highly symmetric beta propeller.","Journal of Molecular Biology","2004","339(2)","459-69","TB",""
"1102","15128743","structure","Chen S, Yakunin AF, Kuznetsova E, Busso D, Pufan R, Proudfoot M, Kim R, Kim SH","Structural and functional characterization of a novel phosphodiesterase from Methanococcus jannaschii.","Journal of Biological Chemistry","2004","279(30)","31854-62","BSGC","1s3m"
"1136","15123643","structure","Buglino J, Onwueme KC, Ferreras JA, Quadri LE, Lima CD","Crystal structure of PapA5, a phthiocerol dimycocerosyl transferase from Mycobacterium tuberculosis.","Journal of Biological Chemistry","2004","279(29)","30634-42","NYSGXRC","1q9j"
"1104","15123424","structure","Ranatunga W, Hill EE, Mooster JL, Holbrook EL, Schulze-Gahmen U, Xu W, Bessman MJ, Brenner SE, Holbrook SR","Structural studies of the Nudix hydrolase DR1025 from Deinococcus radiodurans and its ligand complexes.","Journal of Molecular Biology","2004","339(1)","103-16","BSGC","1sjy"
"1055","15103640","note","Schwarzenbacher R, Jaroszewski L, von Delft F, Abdubek P, Ambing E, Biorac T, Brinen LS, Canaves JM, Cambell J, Chiu HJ, Dai X, Deacon AM, DiDonato M, Elsliger MA, Eshagi S, Floyd R, Godzik A, Grittini C, Grzechnik SK, Hampton E, Karlak C, Klock HE, Koesema E, Kovarik JS, Kreusch A, Kuhn P, Lesley SA, Levin I, McMullan D, McPhillips TM, Miller MD, Morse A, Moy K, Ouyang J, Page R, Quijano K, Robb A, Spraggon G, Stevens RC, van den Bedem H, Velasquez J, Vincent J, Wang X, West B, Wolf G, Xu Q, Hodgson KO, Wooley J, Wilson IA","Crystal structure of a type II quinolic acid phosphoribosyltransferase (TM1645) from Thermotoga maritima at 2.50 A resolution.","Proteins","2004","55(3)","768-71","JCSG","1qpn"
"1068","15103638","note","Schwarzenbacher R, Jaroszewski L, von Delft F, Abdubek P, Ambing E, Biorac T, Brinen LS, Canaves JM, Cambell J, Chiu HJ, Dai X, Deacon AM, DiDonato M, Elsliger MA, Eshagi S, Floyd R, Godzik A, Grittini C, Grzechnik SK, Hampton E, Karlak C, Klock HE, Koesema E, Kovarik JS, Kreusch A, Kuhn P, Lesley SA, Levin I, McMullan D, McPhillips TM, Miller MD, Morse A, Moy K, Ouyang J, Page R, Quijano K, Robb A, Spraggon G, Stevens RC, van den Bedem H, Velasquez J, Vincent J, Wang X, West B, Wolf G, Xu Q, Hodgson KO, Wooley J, Wilson IA","Crystal structure of an aspartate aminotransferase (TM1255) from Thermotoga maritima at 1.90 A resolution.","Proteins","2004","55(3)","759-63","JCSG","1o4s"
"993","15103637","note","Liu G, Sukumaran DK, Xu D, Chiang Y, Acton T, Goldsmith-Fischman S, Honig B, Montelione GT, Szyperski T","NMR structure of the hypothetical protein NMA1147 from Neisseria meningitidis reveals a distinct 5-helix bundle.","Proteins","2004","55(3)","756-8","NESG","1puz"
"1090","15103136","structure","Shin DH, Choi IG, Busso D, Jancarik J, Yokota H, Kim R, Kim SH","Structure of OsmC from Escherichia coli: a salt-shock-induced protein.","Acta Crystallographica Section D: Biological Crystallography","2004","60(Pt 5)","903-11","BSGC",""
"964","15103135","structure","Kantardjieff KA, Kim CY, Naranjo C, Waldo GS, Lekin T, Segelke BW, Zemla A, Park MS, Terwilliger TC, Rupp B","Mycobacterium tuberculosis RmlC epimerase (Rv3465): a promising drug-target structure in the rhamnose pathway.","Acta Crystallographica Section D: Biological Crystallography","2004","60(Pt 5)","895-902","TB",""
"994","15096641","note","Herve du Penhoat C, Atreya HS, Shen Y, Liu G, Acton TB, Xiao R, Li Z, Murray D, Montelione GT, Szyperski T","The NMR solution structure of the 30S ribosomal protein S27e encoded in gene RS27_ARCFU of Archaeoglobus fulgidis reveals a novel protein fold.","Protein Science","2004","13(5)","1407-16","NESG","1qxf"
"1109","15055202","structure","Grynberg M, Godzik A","NERD: a DNA processing-related domain present in the anthrax virulence plasmid, pXO1.","Trends in Biochemical Sciences","2004","29(3)","106-10","JCSG",""
"1107","15048838","structure","Xu QS, Shin DH, Pufan R, Yokota H, Kim R, Kim SH","Crystal structure of a phosphotransacetylase from Streptococcus pyogenes.","Proteins","2004","55(2)","479-81","BSGC",""
"1067","15048837","structure","Schwarzenbacher R, Jaroszewski L, von Delft F, Abdubek P, Ambing E, Biorac T, Brinen LS, Canaves JM, Cambell J, Chiu HJ, Dai X, Deacon AM, DiDonato M, Elsliger MA, Eshagi S, Floyd R, Godzik A, Grittini C, Grzechnik SK, Hampton E, Karlak C, Klock HE, Koesema E, Kovarik JS, Kreusch A, Kuhn P, Lesley SA, Levin I, McMullan D, McPhillips TM, Miller MD, Morse A, Moy K, Ouyang J, Page R, Quijano K, Robb A, Spraggon G, Stevens RC, van den Bedem H, Velasquez J, Vincent J, Wang X, West B, Wolf G, Xu Q, Hodgson KO, Wooley J, Wilson IA","Crystal structure of a phosphoribosylaminoimidazole mutase PurE (TM0446) from Thermotoga maritima at 1.77-A resolution.","Proteins","2004","55(2)","474-8","JCSG","1o4v"
"1005","15044740","structure","Lee CH, Jung JW, Yee A, Arrowsmith CH, Lee W","Solution structure of a novel calcium binding protein, MTH1880, from Methanobacterium thermoautotrophicum.","Protein Science","2004","13(4)","1148-54","NESG","1iqo 1iqs"
"1052","15044458","structure","Saridakis V, Yakunin A, Xu X, Anandakumar P, Pennycooke M, Gu J, Cheung F, Lew JM, Sanishvili R, Joachimiak A, Arrowsmith CH, Christendat D, Edwards AM","The structural basis for methylmalonic aciduria. The crystal structure of archaeal ATP:cobalamin adenosyltransferase.","Journal of Biological Chemistry","2004","279(22)","23646-53","MCSG","1nog"
"967","15028724","structure","Chaudhuri BN, Chan S, Perry LJ, Yeates TO","Crystal structure of the apo forms of psi 55 tRNA pseudouridine synthase from Mycobacterium tuberculosis: a hinge at the base of the catalytic cleft.","Journal of Biological Chemistry","2004","279(23)","24585-91","TB",""
"1120","15003262","structure","Chae YK, Im H, Zhao Q, Doelling JH, Vierstra RD, Markley JL","Prevention of aggregation after refolding by balanced stabilization-destabilization: production of the Arabidopsis thaliana protein APG8a (At4g21980) for NMR structure determination.","Protein Expression and Purification","2004","34(2)","280-3","CESG","1g10 1g11"
"1003","14999102","structure","Das K, Acton T, Chiang Y, Shih L, Arnold E, Montelione GT","Crystal structure of RlmAI: implications for understanding the 23S rRNA G745/G748-methylation at the macrolide antibiotic-binding site.","Proceedings of the National Academy of Sciences of the United States of America","2004","101(12)","4041-6","NESG","1p91"
"1054","14997579","note","Schwarzenbacher R, von Delft F, Abdubek P, Ambing E, Biorac T, Brinen LS, Canaves JM, Cambell J, Chiu HJ, Dai X, Deacon AM, DiDonato M, Elsliger MA, Eshagi S, Floyd R, Godzik A, Grittini C, Grzechnik SK, Hampton E, Jaroszewski L, Karlak C, Klock HE, Koesema E, Kovarik JS, Kreusch A, Kuhn P, Lesley SA, Levin I, McMullan D, McPhillips TM, Miller MD, Morse A, Moy K, Ouyang J, Page R, Quijano K, Robb A, Spraggon G, Stevens RC, van den Bedem H, Velasquez J, Vincent J, Wang X, West B, Wolf G, Xu Q, Hodgson KO, Wooley J, Wilson IA","Crystal structure of a putative PII-like signaling protein (TM0021) from Thermotoga maritima at 2.5 A resolution.","Proteins","2004","54(4)","810-3","JCSG","1o51"
"1033","14997578","note","Erlandsen H, Canaves JM, Elsliger MA, von Delft F, Brinen LS, Dai X, Deacon AM, Floyd R, Godzik A, Grittini C, Grzechnik SK, Jaroszewski L, Klock HE, Koesema E, Kovarik JS, Kreusch A, Kuhn P, Lesley SA, McMullan D, McPhillips TM, Miller MD, Morse A, Moy K, Ouyang J, Page R, Robb A, Quijano K, Schwarzenbacher R, Spraggon G, Stevens RC, van den Bedem H, Velasquez J, Vincent J, Wang X, West B, Wolf G, Hodgson KO, Wooley J, Wilson IA","Crystal structure of an HEPN domain protein (TM0613) from Thermotoga maritima at 1.75 A resolution.","Proteins","2004","54(4)","806-9","JCSG",""
"1069","14997577","note","Schwarzenbacher R, Deacon AM, Jaroszewski L, Brinen LS, Canaves JM, Dai X, Elsliger MA, Floyd R, Godzik A, Grittini C, Grzechnik SK, Klock HE, Koesema E, Kovarik JS, Kreusch A, Kuhn P, Lesley SA, McMullan D, McPhillips TM, Miller MD, Morse A, Moy K, Nelson MS, Ouyang J, Page R, Robb A, Quijano K, Spraggon G, Stevens RC, van den Bedem H, Velasquez J, Vincent J, von Delft F, Wang X, West B, Wolf G, Hodgson KO, Wooley J, Wilson IA","Crystal structure of a putative glutamine amido transferase (TM1158) from Thermotoga maritima at 1.7 A resolution.","Proteins","2004","54(4)","801-5","JCSG","1o1y"
"1001","14997575","note","Xu D, Liu G, Xiao R, Acton T, Goldsmith-Fischman S, Honig B, Montelione GT, Szyperski T","NMR structure of the hypothetical protein AQ-1857 encoded by the Y157 gene from Aquifex aeolicus reveals a novel protein fold.","Proteins","2004","54(4)","794-6","NESG","1nwb"
"1137","14993693","structure","Daniels BV, Jiang JS, Fu D","Crystallization and preliminary crystallographic analysis of the Escherichia coli water channel AqpZ.","Acta Crystallographica Section D: Biological Crystallography","2004","60(Pt 3)","561-3","NYSGXRC",""
"1138","14993676","structure","Gogos A, Gorman J, Shapiro L","Structure of Escherichia coli YfdW, a type III CoA transferase.","Acta Crystallographica Section D: Biological Crystallography","2004","60(Pt 3)","507-11","NYSGXRC","1q7e"
"1116","14975761","structure","Deng L, Starostina NG, Liu ZJ, Rose JP, Terns RM, Terns MP, Wang BC","Structure determination of fibrillarin from the hyperthermophilic archaeon Pyrococcus furiosus.","Biochemical and Biophysical Research Communications","2004","315(3)","726-32","SECSG",""
"306","14872131","structure","Lytle  BL, Peterson  FC, Kjer  KL, Frederick  RO, Zhao  Q, Thao  S, Bingman  C, Johnson  KA, Phillips  GN, Volkman  BF","Structure of the hypothetical protein At3g17210 from Arabidopsis thaliana.","Journal of Biomolecular NMR","2004","28","397-400","CESG","1q53"
"1006","14767079","structure","Makokha M, Huang YJ, Montelione G, Edison AS, Barbar E","The solution structure of the pH-induced monomer of dynein light-chain LC8 from Drosophila.","Protein Science","2004","13(3)","727-34","NESG","1rhw"
"1114","14756552","structure","Schubot FD, Kataeva IA, Chang J, Shah AK, Ljungdahl LG, Rose JP, Wang BC","Structural basis for the exocellulase activity of the cellobiohydrolase CbhA from Clostridium thermocellum.","Biochemistry","2004","43(5)","1163-70","SECSG",""
"1002","14739645","note","Monleón D, Chiang Y, Aramini JM, Swapna GV, Macapagal D, Gunsalus KC, Kim S, Szyperski T, Montelione GT","Backbone 1H, 15N and 13C assignments for the 21 kDa Caenorhabditis elegans homologue of \"brain-specific\" protein.","Journal of Biomolecular NMR","2004","28(1)","91-2","NESG","1pul"
"1140","14731396","structure","Fabrega C, Hausmann S, Shen V, Shuman S, Lima CD","Structure and mechanism of mRNA cap (guanine-N7) methyltransferase.","Molecular Cell","2004","13(1)","77-89","NYSGXRC","1ri1"
"1004","14718529","structure","Forouhar F, Lee I, Benach J, Kulkarni K, Xiao R, Acton TB, Montelione GT, Tong L","A novel NAD-binding protein revealed by the crystal structure of 2,3-diketo-L-gulonate reductase (YiaK).","Journal of Biological Chemistry","2004","279(13)","13148-55","NESG","1nxu 1s20"
"1025","14705036","note","Schwarzenbacher R, von Delft F, Canaves JM, Brinen LS, Dai X, Deacon AM, Elsliger MA, Eshaghi S, Floyd R, Godzik A, Grittini C, Grzechnik SK, Guda C, Jaroszewski L, Karlak C, Klock HE, Koesema E, Kovarik JS, Kreusch A, Kuhn P, Lesley SA, McMullan D, McPhillips TM, Miller MA, Miller MD, Morse A, Moy K, Ouyang J, Page R, Robb A, Rodrigues K, Selby TL, Spraggon G, Stevens RC, van den Bedem H, Velasquez J, Vincent J, Wang X, West B, Wolf G, Hodgson KO, Wooley J, Wilson IA","Crystal structure of an iron-containing 1,3-propanediol dehydrogenase (TM0920) from Thermotoga maritima at 1.3 A resolution.","Proteins","2004","54(1)","174-7","JCSG","1o2d"
"1041","14705034","structure","Viola CM, Saridakis V, Christendat D","Crystal structure of chorismate synthase from Aquifex aeolicus reveals a novel beta alpha beta sandwich topology.","Proteins","2004","54(1)","166-9","MCSG","1q1l"
"1037","14705033","structure","Savchenko A, Skarina T, Evdokimova E, Watson JD, Laskowski R, Arrowsmith CH, Edwards AM, Joachimiak A, Zhang RG","X-ray crystal structure of CutA from Thermotoga maritima at 1.4 A resolution.","Proteins","2004","54(1)","162-5","MCSG","1kr4"
"1071","14705032","note","Page R, Nelson MS, von Delft F, Elsliger MA, Canaves JM, Brinen LS, Dai X, Deacon AM, Floyd R, Godzik A, Grittini C, Grzechnik SK, Jaroszewski L, Klock HE, Koesema E, Kovarik JS, Kreusch A, Kuhn P, Lesley SA, McMullan D, McPhillips TM, Miller MD, Morse A, Moy K, Ouyang J, Robb A, Rodrigues K, Schwarzenbacher R, Spraggon G, Stevens RC, van den Bedem H, Velasquez J, Vincent J, Wang X, West B, Wolf G, Hodgson KO, Wooley J, Wilson IA","Crystal structure of gamma-glutamyl phosphate reductase (TM0293) from Thermotoga maritima at 2.0 A resolution.","Proteins","2004","54(1)","157-61","JCSG",""
"1139","14685275","structure","Deo RC, Schmidt EF, Elhabazi A, Togashi H, Burley SK, Strittmatter SM","Structural bases for CRMP function in plexin-dependent semaphorin3A signaling.","EMBO Journal","2004","23(1)","9-22","NYSGXRC","1kcx"
"962","14597624","structure","Goulding CW, Apostol MI, Gleiter S, Parseghian A, Bardwell J, Gennaro M, Eisenberg D","Gram-positive DsbE proteins function differently from Gram-negative DsbE homologs. A structure to function analysis of DsbE from Mycobacterium tuberculosis.","Journal of Biological Chemistry","2004","279(5)","3516-24","TB",""
"1042","14555659","structure","Kim Y, Yakunin AF, Kuznetsova E, Xu X, Pennycooke M, Gu J, Cheung F, Proudfoot M, Arrowsmith CH, Joachimiak A, Edwards AM, Christendat D","Structure- and function-based characterization of a new phosphoglycolate phosphatase from Thermoplasma acidophilum.","Journal of Biological Chemistry","2004","279(1)","517-26","MCSG","1l6r 1kyt"
"1185","15185964","structure","Rubin SM, Pelton JG, Yokota H, Kim R, Wemmer DE","Solution structure of a putative ribosome binding protein from Mycoplasma pneumoniae and comparison to a distant homolog.","Journal of Structural and Functional Genomics","2003","4(4)","235-43","BSGC",""
"1161","14635137","structure","Taneja B, Maar S, Shuvalova L, Collart F, Anderson W, Mondragón A","Structure of the bacillus subtilis YYCN protein: a putative N-acetyltransferase.","Proteins","2003","53(4)","950-2","MCSG","1ufh"
"1173","14635136","structure","Symersky J, Lin G, Li S, Qiu S, Carson M, Schormann N, Luo M","Structural genomics of caenorhabditis elegans: crystal structure of calmodulin.","Proteins","2003","53(4)","947-9","SECSG",""
"1175","14635135","structure","Symersky J, Li S, Carson M, Luo D, Luan CH, Luo M","Structural genomics of Caenorhabditis elegans: structure of dihydropteridine reductase.","Proteins","2003","53(4)","944-6","SECSG",""
"1224","14627743","note","Wu B, Yee A, Pineda-Lucena A, Semesi A, Ramelot TA, Cort JR, Jung JW, Edwards A, Lee W, Kennedy M, Arrowsmith CH","Solution structure of ribosomal protein S28E from Methanobacterium thermoautotrophicum.","Protein Science","2003","12(12)","2831-7","NESG","1ne3"
"1247","14627742","note","Aramini JM, Huang YJ, Cort JR, Goldsmith-Fischman S, Xiao R, Shih LY, Ho CK, Liu J, Rost B, Honig B, Kennedy MA, Acton TB, Montelione GT","Solution NMR structure of the 30S ribosomal protein S28E from Pyrococcus horikoshii.","Protein Science","2003","12(12)","2823-30","NESG","1ny4"
"1196","14621988","structure","Shin DH, Nguyen HH, Jancarik J, Yokota H, Kim R, Kim SH","Crystal structure of NusA from Thermotoga maritima and functional implication of the N-terminal domain.","Biochemistry","2003","42(46)","13429-37","BSGC",""
"1183","14550307","structure","Moshinsky DJ, Bellamacina CR, Boisvert DC, Huang P, Hui T, Jancarik J, Kim SH, Rice AG","SU9516: biochemical analysis of cdk inhibition and crystal structure in complex with cdk2.","Biochemical and Biophysical Research Communications","2003","310(3)","1026-31","BSGC",""
"1199","14536023","structure","Grynberg M, Jaroszewski L, Godzik A","Domain analysis of the tubulin cofactor system: a model for tubulin folding and dimerization.","BMC Bioinformatics","2003","4(5)","46","JCSG",""
"1220","14531661","note","Bayro MJ, Mukhopadhyay J, Swapna GV, Huang JY, Ma LC, Sineva E, Dawson PE, Montelione GT, Ebright RH","Structure of antibacterial peptide microcin J25: a 21-residue lariat protoknot.","Journal of the American Chemical Society","2003","125(41)","12382-3","NESG","1pp5"
"1221","14517985","note","Forouhar F, Shen J, Xiao R, Acton TB, Montelione GT, Tong L","Functional assignment based on structural analysis: crystal structure of the yggJ protein (HI0303) of Haemophilus influenzae reveals an RNA methyltransferase with a deep trefoil knot.","Proteins","2003","53(2)","329-32","NESG","1nxz"
"1182","14517984","structure","Liu J, Wang W, Shin DH, Yokota H, Kim R, Kim SH","Crystal structure of tRNA (m1G37) methyltransferase from Aquifex aeolicus at 2.6 A resolution: a novel methyltransferase fold.","Proteins","2003","53(2)","326-8","BSGC","1oy5"
"1268","14517982","structure","Gogos A, Mu H, Bahna F, Gomez CA, Shapiro L","Crystal structure of YdcE protein from Bacillus subtilis.","Proteins","2003","53(2)","320-2","NYSGXRC","1ne8"
"1159","14499611","structure","Zhang RG, Andersson CE, Skarina T, Evdokimova E, Edwards AM, Joachimiak A, Savchenko A, Mowbray SL","The 2.2 A resolution structure of RpiB/AlsB from Escherichia coli illustrates a new approach to the ribose-5-phosphate isomerase reaction","Journal of Molecular Biology","2003","332(5)","1083-94","MCSG","1nn4"
"1219","12975589","note","Aramini JM, Mills JL, Xiao R, Acton TB, Wu MJ, Szyperski T, Montelione GT","Resonance assignments for the hypothetical protein yggU from Escherichia coli.","Journal of Biomolecular NMR","2003","27(3)","285-6","NESG","1n91"
"1155","12954781","structure","Osipiuk J, Walsh MA, Joachimiak A","Crystal structure of MboIIA methyltransferase.","Nucleic Acids Research","2003","31(18)","5440-8","MCSG","1g60"
"1206","12945057","note","Schwarzenbacher R, Canaves JM, Brinen LS, Dai X, Deacon AM, Elsliger MA, Eshaghi S, Floyd R, Godzik A, Grittini C, Grzechnik SK, Guda C, Jaroszewski L, Karlak C, Klock HE, Koesema E, Kovarik JS, Kreusch A, Kuhn P, Lesley SA, McMullan D, McPhillips TM, Miller MA, Miller MD, Morse A, Moy K, Ouyang J, Robb A, Rodrigues K, Selby TL, Spraggon G, Stevens RC, van den Bedem H, Velasquez J, Vincent J, Wang X, West B, Wolf G, Hodgson KO, Wooley J, Wilson IA","Crystal structure of uronate isomerase (TM0064) from Thermotoga maritima at 2.85 A resolution.","Proteins","2003","53(1)","142-5","JCSG",""
"1180","12943365","structure","Choi IG, Shin DH, Brandsen J, Jancarik J, Busso D, Yokota H, Kim R, Kim SH","Crystal structure of a stress inducible protein from Mycoplasma pneumoniae at 2.85 A resolution.","Journal of Structural and Functional Genomics","2003","4(1)","31-4","BSGC",""
"1254","12943364","structure","Ramelot TA, Cort JR, Yee AA, Semesi A, Edwards AM, Arrowsmith CH, Kennedy MA","Solution structure of the yeast ubiquitin-like modifier protein Hub1.","Journal of Structural and Functional Genomics","2003","4(1)","25-30","NESG","1m94"
"429","12930993","structure","Singh  SM, Murray  D","Molecular modeling of the membrane targeting of phospholipase C pleckstrin homology domains.","Protein Science","2003","12","1934-53","NESG","1mai 1fb8 1b55"
"426","12913416","note","Zheng D, Cort JR, Chiang Y, Acton T, Kennedy MA, Montelione GT","1H, 13C and 15N resonance assignments for methionine sulfoxide reductase B from Bacillus subtilis.","Journal of Biomolecular NMR","2003","27(2)","183-4","NESG","1xm0"
"1172","12910462","structure","Wang W, Kim R, Jancarik J, Yokota H, Kim SH","Crystal structure of a flavin-binding protein from Thermotoga maritima.","Proteins","2003","52(4)","633-5","BSGC",""
"1267","12906831","structure","Padyana AK, Burley SK","Crystal structure of shikimate 5-dehydrogenase (SDH) bound to NADP: insights into function and evolution.","Structure","2003","11(8)","1005-13","NYSGXRC","1nvt"
"1252","12866058","structure","Tao X, Khayat R, Christendat D, Savchenko A, Xu X, Goldsmith-Fischman S, Honig B, Edwards A, Arrowsmith CH, Tong L","Crystal structures of MTH1187 and its yeast ortholog YBL001c.","Proteins","2003","52(3)","478-80","NESG","1lxj 1lxn"
"1179","12842039","structure","Chaudhuri BN, Sawaya MR, Kim CY, Waldo GS, Park MS, Terwilliger TC, Yeates TO","The crystal structure of the first enzyme in the pantothenate biosynthetic pathway, ketopantoate hydroxymethyltransferase, from M tuberculosis.","Structure","2003","11(7)","753-64","TB",""
"1269","12833551","structure","Kumaran D, Eswaramoorthy S, Gerchman SE, Kycia H, Studier FW, Swaminathan S","Crystal structure of a putative CN hydrolase from yeast.","Proteins","2003","52(2)","283-91","NYSGXRC","1f89"
"1184","12832766","structure","Oganesyan V, Busso D, Brandsen J, Chen S, Jancarik J, Kim R, Kim SH","Structure of the hypothetical protein AQ_1354 from Aquifex aeolicus.","Acta Crystallographica Section D: Biological Crystallography","2003","59(Pt 7)","1219-23","BSGC",""
"1223","12824501","note","Ramelot TA, Ni S, Goldsmith-Fischman S, Cort JR, Honig B, Kennedy MA","Solution structure of Vibrio cholerae protein VC0424: a variation of the ferredoxin-like fold.","Protein Science","2003","12(7)","1556-61","NESG","1nxi"
"1197","12824492","structure","Shin DH, Roberts A, Jancarik J, Yokota H, Kim R, Wemmer DE, Kim SH","Crystal structure of a phosphatase with a unique substrate binding domain from Thermotoga maritima.","Protein Science","2003","12(7)","1464-72","BSGC",""
"1160","12824489","structure","Miller DJ, Ouellette N, Evdokimova E, Savchenko A, Edwards A, Anderson WF","Crystal complexes of a predicted S-adenosylmethionine-dependent methyltransferase reveal a typical AdoMet binding domain and a substrate recognition domain.","Protein Science","2003","12(7)","1432-42","MCSG","1n2x 1m6y"
"1200","12823970","structure","Kreusch A, Spraggon G, Lee CC, Klock H, McMullan D, Ng K, Shin T, Vincent J, Warner I, Ericson C, Lesley SA","Structure analysis of peptide deformylases from Streptococcus pneumoniae, Staphylococcus aureus, Thermotoga maritima and Pseudomonas aeruginosa: snapshots of the oxygen sensitivity of peptide deformylase.","Journal of Molecular Biology","2003","330(2)","309-21","JCSG",""
"1181","12817080","structure","Kim R, Lai L, Lee HH, Cheong GW, Kim KK, Wu Z, Yokota H, Marqusee S, Kim SH","On the mechanism of chaperone activity of the small heat-shock protein of Methanococcus jannaschii.","Proceedings of the National Academy of Sciences of the United States of America","2003","100(14)","8151-5","BSGC",""
"1201","12791256","structure","Mathews II, Deacon AM, Canaves JM, McMullan D, Lesley SA, Agarwalla S, Kuhn P","Functional analysis of substrate and cofactor complex structures of a thymidylate synthase-complementing protein.","Structure","2003","11(6)","677-90","JCSG",""
"1198","12765831","structure","Grynberg M, Erlandsen H, Godzik A","HEPN: a common domain in bacterial drug resistance and human neurodegenerative proteins.","Trends in Biochemical Sciences","2003","28(5)","224-6","JCSG",""
"1156","12732651","structure","Sanishvili R, Yakunin AF, Laskowski RA, Skarina T, Evdokimova E, Doherty-Kirby A, Lajoie GA, Thornton JM, Arrowsmith CH, Savchenko A, Joachimiak A, Edwards AM","Integrating structure, bioinformatics, and enzymology to discover function: BioH, a new carboxylesterase from Escherichia coli.","Journal of Biological Chemistry","2003","278(28)","26039-45","MCSG","1m33"
"1266","12718874","structure","Kamada K, Hanaoka F, Burley SK","Crystal structure of the MazE/MazF complex: molecular bases of antidote-toxin recognition.","Molecular Cell","2003","11(4)","875-84","NYSGXRC","1ub4"
"1222","12717036","note","Pineda-Lucena A, Liao JC, Cort JR, Yee A, Kennedy MA, Edwards AM, Arrowsmith CH","A novel member of the split betaalphabeta fold: Solution structure of the hypothetical protein YML108W from Saccharomyces cerevisiae.","Protein Science","2003","12(5)","1136-40","NESG","1n6z"
"1271","12717031","structure","Wang S, Eisenberg D","Crystal structures of a pantothenate synthetase from M. tuberculosis and its complexes with substrates and a reaction intermediate.","Protein Science","2003","12(5)","1097-108","TB",""
"1174","12696058","structure","Symersky J, Li S, Carson M, Luo M","Structural genomics of Caenorhabditis elegans: triosephosphate isomerase.","Proteins","2003","51(3)","484-6","SECSG","1mo0"
"1157","12660999","structure","Zhang RG, Duke N, Laskowski R, Evdokimova E, Skarina T, Edwards A, Joachimiak A, Savchenko A","Conserved protein YecM from Escherichia coli shows structural homology to metal-binding isomerases and oxygenases.","Proteins","2003","51(2)","311-4","MCSG","1k4n"
"1204","12652129","note","Etezady-Esfarjani T, Peti W, Wüthrich K","NMR assignment of the conserved hypothetical protein TM1290 of Thermotoga maritima.","Journal of Biomolecular NMR","2003","25(2)","167-8","JCSG",""
"1162","12649270","structure","Wu RY, Zhang RG, Zagnitko O, Dementieva I, Maltzev N, Watson JD, Laskowski R, Gornicki P, Joachimiak A","Crystal structure of Enterococcus faecalis SlyA-like transcriptional factor.","Journal of Biological Chemistry","2003","278(22)","20240-4","MCSG","1lj9"
"1177","12637582","structure","Gokulan K, Rupp B, Pavelka MS, Jacobs WR, Sacchettini JC","Crystal structure of Mycobacterium tuberculosis diaminopimelate decarboxylase, an essential enzyme in bacterial lysine biosynthesis.","Journal of Biological Chemistry","2003","278(20)","18588-96","TB",""
"1257","12628255","structure","Huang YJ, Swapna GV, Rajan PK, Ke H, Xia B, Shukla K, Inouye M, Montelione GT","Solution NMR structure of ribosome-binding factor A (RbfA), a cold-shock adaptation protein from Escherichia coli.","Journal of Molecular Biology","2003","327(2)","521-36","NESG","1kkg"
"1258","12624088","structure","Benach J, Lee I, Edstrom W, Kuzin AP, Chiang Y, Acton TB, Montelione GT, Hunt JF","The 2.3-A crystal structure of the shikimate 5-dehydrogenase orthologue YdiB from Escherichia coli suggests a novel catalytic environment for an NAD-dependent dehydrogenase.","Journal of Biological Chemistry","2003","278(21)","19176-82","NESG","1npd"
"1178","12606717","structure","Sharma V, Arockiasamy A, Ronning DR, Savva CG, Holzenburg A, Braunstein M, Jacobs WR, Sacchettini JC","Crystal structure of Mycobacterium tuberculosis SecA, a preprotein translocating ATPase.","Proceedings of the National Academy of Sciences of the United States of America","2003","100(5)","2243-8","TB","1nl3"
"1253","12600940","structure","Szymczyna BR, Bowman J, McCracken S, Pineda-Lucena A, Lu Y, Cox B, Lambermon M, Graveley BR, Arrowsmith CH, Blencowe BJ","Structure and function of the PWI motif: a novel nucleic acid-binding domain that facilitates pre-mRNA processing.","Genes and Development","2003","17(4)","461-75","NESG","1mp1"
"1186","12577257","structure","Schulze-Gahmen U, Pelaschier J, Yokota H, Kim R, Kim SH","Crystal structure of a hypothetical protein, TM841 of Thermotoga maritima, reveals its function as a fatty acid-binding protein.","Proteins","2003","50(4)","526-30","BSGC",""
"1176","12548283","structure","Young TA, Delagoutte B, Endrizzi JA, Falick AM, Alber T","Structure of Mycobacterium tuberculosis PknB supports a universal activation mechanism for Ser/Thr protein kinases.","Nature Structural & Molecular Biology","2003","10(3)","168-74","TB",""
"1256","12534273","structure","Greenfield NJ, Swapna GV, Huang Y, Palm T, Graboski S, Montelione GT, Hitchcock-DeGregori SE","The structure of the carboxyl terminus of striated alpha-tropomyosin in solution reveals an unusual parallel arrangement of interacting alpha-helices.","Biochemistry","2003","42(3)","614-9","NESG","1mv4"
"1158","12517338","structure","Zhang R, Andersson CE, Savchenko A, Skarina T, Evdokimova E, Beasley S, Arrowsmith CH, Edwards AM, Joachimiak A, Mowbray SL","Structure of Escherichia coli ribose-5-phosphate isomerase: a ubiquitous enzyme of the pentose phosphate pathway and the Calvin cycle.","Structure","2003","11(1)","31-42","MCSG","1ks2 1o8b"
"1168","12511575","structure","Cho Y, Sharma V, Sacchettini JC","Crystal structure of ATP phosphoribosyltransferase from Mycobacterium tuberculosis.","Journal of Biological Chemistry","2003","278(10)","8333-9","TB",""
"1265","12499548","structure","Eswaramoorthy S, Gerchman S, Graziano V, Kycia H, Studier FW, Swaminathan S","Structure of a yeast hypothetical protein selected by a structural genomics approach.","Acta Crystallographica Section D: Biological Crystallography","2003","59(Pt 1)","127-35","NYSGXRC","1b54"
"1264","12499542","structure","Burling FT, Kniewel R, Buglino JA, Chadha T, Beckwith A, Lima CD","Structure of Escherichia coli uridine phosphorylase at 2.0 A.","Acta Crystallographica Section D: Biological Crystallography","2003","59(Pt 1)","73-6","NYSGXRC","1lx7"
"1251","12496312","structure","Yang Z, Savchenko A, Yakunin A, Zhang R, Edwards A, Arrowsmith C, Tong L","Aspartate dehydrogenase, a novel enzyme identified from structural and functional studies of TM1643.","Journal of Biological Chemistry","2003","278(10)","8804-8","NESG","1h2h"
"1205","12486729","note","Brinen LS, Canaves JM, Dai X, Deacon AM, Elsliger MA, Eshaghi S, Floyd R, Godzik A, Grittini C, Grzechnik SK, Guda C, Jaroszewski L, Karlak C, Klock HE, Koesema E, Kovarik JS, Kreusch A, Kuhn P, Lesley SA, McMullan D, McPhillips TM, Miller MA, Miller MD, Morse A, Moy K, Ouyang J, Robb A, Rodrigues K, Selby TL, Spraggon G, Stevens RC, van den Bedem H, Velasquez J, Vincent J, Wang X, West B, Wolf G, Taylor SS, Hodgson KO, Wooley J, Wilson IA","Crystal structure of a zinc-containing glycerol dehydrogenase (TM0423) from Thermotoga maritima at 1.5 A resolution.","Proteins","2003","50(2)","371-4","JCSG",""
"1154","12486711","structure","Zarembinski TI, Kim Y, Peterson K, Christendat D, Dharamsi A, Arrowsmith CH, Edwards AM, Joachimiak A","Deep trefoil knot implicated in RNA binding found in an archaebacterial protein.","Proteins","2003","50(2)","177-83","MCSG","1k3r"
"1149","12471609","structure","Ray SS, Bonanno JB, Chen H, de Lencastre H, Wu S, Tomasz A, Burley SK","X-ray structure of an M. jannaschii DNA-binding protein: implications for antibiotic resistance in S. aureus.","Proteins","2003","50(1)","170-3","NYSGXRC","1ku9"
"1255","12468528","structure","Karpowich NK, Huang HH, Smith PC, Hunt JF","Crystal structures of the BtuF periplasmic-binding protein for vitamin B12 suggest a functionally important reduction in protein mobility upon ligand binding.","Journal of Biological Chemistry","2003","278(10)","8429-34","NESG","1n4a 1n4d"
"1170","12393860","structure","Smith CV, Huang CC, Miczak A, Russell DG, Sacchettini JC, Höner zu Bentrup K","Biochemical and structural studies of malate synthase from Mycobacterium tuberculosis.","Journal of Biological Chemistry","2003","278(3)","1735-43","TB",""
"1212","","structure","Shi W, Ostrov D, Gerchman S, Kycia H, Studier FW, Edstrom W, Bresnick A, Ehrlich J, Blanchard J, Almo S, Chance MR","High-Throughput Structural Biology and Proteomics","Books and Proceedings","2003","","299-324","NYSGXRC",""
"1369","12836703","structure","Kniewel R, Buglino JA, Shen V, Chadha T, Beckwith A, Lima CD","Structural analysis of Saccharomyces cerevisiae myo-inositol phosphate synthase.","Journal of Structural and Functional Genomics","2002","2(3)","129-34","NYSGXRC","1la2"
"1276","12836674","structure","Shin DH, Yokota H, Kim R, Kim SH","Crystal structure of a conserved hypothetical protein from Escherichia coli.","Journal of Structural and Functional Genomics","2002","2(1)","53-66","BSGC",""
"1361","12504570","structure","Yuan W, Aramini JM, Montelione GT, Krug RM","Structural basis for ubiquitin-like ISG 15 protein binding to the NS1 protein of influenza B virus: a protein-protein interaction function that is not shared by the corresponding N-terminal domain of the NS1 protein of influenza A virus.","Virology","2002","304(2)","291-301","NESG","1ns1"
"1351","12467574","structure","Gogos A, Shapiro L","Large conformational changes in the catalytic cycle of glutathione synthase.","Structure","2002","10(12)","1669-76","NYSGXRC","1m0t"
"1319","12457846","structure","Zhang RG, Grembecka J, Vinokour E, Collart F, Dementieva I, Minor W, Joachimiak A","Structure of Bacillus subtilis YXKO--a member of the UPF0031 family and a putative kinase.","Journal of Structural Biology","2002","139(3)","161-70","MCSG","1kyh"
"1316","12454473","structure","Korolev S, Koroleva O, Petterson K, Gu M, Collart F, Dementieva I, Joachimiak A","Autotracing of Escherichia coli acetate CoA-transferase alpha-subunit structure using 3.4 A MAD and 1.9 A native data.","Acta Crystallographica Section D: Biological Crystallography","2002","58(Pt 12)","2116-21","MCSG","1k6d"
"1300","12441386","structure","Goulding CW, Parseghian A, Sawaya MR, Cascio D, Apostol MI, Gennaro ML, Eisenberg D","Crystal structure of a major secreted protein of Mycobacterium tuberculosis-MPT63 at 1.5-A resolution.","Protein Science","2002","11(12)","2887-93","TB",""
"1275","12429099","structure","Buglino J, Shen V, Hakimian P, Lima CD","Structural and biochemical analysis of the Obg GTP binding protein.","Structure","2002","10(11)","1581-92","NYSGXRC",""
"1366","12429091","structure","Ray SS, Bonanno JB, Rajashankar KR, Pinho MG, He G, De Lencastre H, Tomasz A, Burley SK","Cocrystal structures of diaminopimelate decarboxylase: mechanism, evolution, and inhibition of an antibiotic resistance accessory factor.","Structure","2002","10(11)","1499-508","NYSGXRC","1tuf"
"1357","12429089","structure","Keller JP, Smith PM, Benach J, Christendat D, deTitta GT, Hunt JF","The crystal structure of MT0146/CbiT suggests that the putative precorrin-8w decarboxylase is a methyltransferase.","Structure","2002","10(11)","1475-87","NESG","1f38 1kxz 1l3b 1l3c 1l3i"
"1322","12419245","structure","Alexander JM, Nelson CA, van Berkel V, Lau EK, Studts JM, Brett TJ, Speck SH, Handel TM, Virgin HW, Fremont DH","Structural basis of chemokine sequestration by a herpesvirus decoy receptor","Cell","2002","111(3)","343-56","MCSG","1mkf"
"1277","12369816","structure","Zhao Q, Chae YK, Markley JL","NMR solution structure of ATTp, an Arabidopsis thaliana trypsin inhibitor.","Biochemistry","2002","41(41)","12284-96","CESG","1jxc"
"1342","12367520","structure","Ramelot TA, Cort JR, Yee AA, Liu F, Goshe MB, Edwards AM, Smith RD, Arrowsmith CH, Dever TE, Kennedy MA","Myxoma virus immunomodulatory protein M156R is a structural mimic of eukaryotic translation initiation factor eIF2alpha.","Journal of Molecular Biology","2002","322(5)","943-54","NESG","1jjg"
"1323","12360532","structure","Korolev S, Skarina T, Evdokimova E, Beasley S, Edwards A, Joachimiak A, Savchenko A","Crystal structure of glutamine amidotransferase from Thermotoga maritima.","Proteins","2002","49(3)","420-2","MCSG","1kxj"
"1354","12269813","structure","Kielkopf CL, Burley SK","X-ray structures of threonine aldolase complexes: structural basis of substrate recognition.","Biochemistry","2002","41(39)","11711-20","NYSGXRC","1lw4"
"1358","12234919","structure","Jogl G, Shen Y, Gebauer D, Li J, Wiegmann K, Kashkar H, Krönke M, Tong L","Crystal structure of the BEACH domain reveals an unusual fold and extensive association with a novel PH domain.","EMBO Journal","2002","21(18)","4785-95","NESG","1mi1"
"1283","12221106","structure","Li S, Finley J, Liu ZJ, Qiu SH, Chen H, Luan CH, Carson M, Tsao J, Johnson D, Lin G, Zhao J, Thomas W, Nagy LA, Sha B, DeLucas LJ, Wang BC, Luo M","Crystal structure of the cytoskeleton-associated protein glycine-rich (CAP-Gly) domain.","Journal of Biological Chemistry","2002","277(50)","48596-601","SECSG",""
"1335","12211038","note","Cort JR, Chiang Y, Zheng D, Montelione GT, Kennedy MA","NMR structure of conserved eukaryotic protein ZK652.3 from C. elegans: a ubiquitin-like fold.","Proteins","2002","48(4)","733-6","NESG","1l7y"
"1285","12211025","note","Kuhn P, Lesley SA, Mathews II, Canaves JM, Brinen LS, Dai X, Deacon AM, Elsliger MA, Eshaghi S, Floyd R, Godzik A, Grittini C, Grzechnik SK, Guda C, Hodgson KO, Jaroszewski L, Karlak C, Klock HE, Koesema E, Kovarik JM, Kreusch AT, McMullan D, McPhillips TM, Miller MA, Miller M, Morse A, Moy K, Ouyang J, Robb A, Rodrigues K, Selby TL, Spraggon G, Stevens RC, Taylor SS, van den Bedem H, Velasquez J, Vincent J, Wang X, West B, Wolf G, Wooley J, Wilson IA","Crystal structure of thy1, a thymidylate synthase complementing protein from Thermotoga maritima at 2.25 A resolution.","Proteins","2002","49(1)","142-5","JCSG",""
"1336","12211008","structure","Ramelot TA, Cort JR, Yee AA, Semesi A, Edwards AM, Arrowsmith CH, Kennedy MA","NMR structure of the Escherichia coli protein YacG: a novel sequence motif in the zinc-finger family of proteins.","Proteins","2002","49(2)","289-93","NESG","1lv3"
"1359","12211007","structure","Batra R, Christendat D, Edwards A, Arrowsmith C, Tong L","Crystal structure of MTH169, a crucial component of phosphoribosylformylglycinamidine synthetase.","Proteins","2002","49(2)","285-8","NESG","1gtd"
"1284","12186970","structure","Kim SH, Wang W, Kim KK","Dynamic and clustering model of bacterial chemotaxis receptors: structural basis for signaling and high sensitivity.","Proceedings of the National Academy of Sciences of the United States of America","2002","99(18)","11611-5","BSGC",""
"1301","12146952","structure","Gill HS, Pfluegl GM, Eisenberg D","Multicopy crystallographic refinement of a relaxed glutamine synthetase from Mycobacterium tuberculosis highlights flexible loops in the enzymatic mechanism and its regulation.","Biochemistry","2002","41(31)","9863-72","TB",""
"1347","12112709","structure","Deaconescu AM, Roll-Mecak A, Bonanno JB, Gerchman SE, Kycia H, Studier FW, Burley SK","X-ray structure of Saccharomyces cerevisiae homologous mitochondrial matrix factor 1 (Hmf1).","Proteins","2002","48(2)","431-6","NYSGXRC","1jd1"
"1317","12112708","structure","Kim Y, Skarina T, Beasley S, Laskowski R, Arrowsmith C, Joachimiak A, Edwards A, Savchenko A","Crystal structure of Escherichia coli EC1530, a glyoxylate induced protein YgbM.","Proteins","2002","48(2)","427-30","MCSG","1k77"
"1318","12112707","structure","Zhang RG, Dementieva I, Duke N, Collart F, Quaite-Randall E, Alkire R, Dieckman L, Maltsev N, Korolev O, Joachimiak A","Crystal structure of Bacillus subtilis ioli shows endonuclase IV fold with altered Zn binding.","Proteins","2002","48(2)","423-6","MCSG","1i6n 1i60"
"1296","12060744","structure","Shin DH, Yokota H, Kim R, Kim SH","Crystal structure of conserved hypothetical protein Aq1575 from Aquifex aeolicus.","Proceedings of the National Academy of Sciences of the United States of America","2002","99(12)","7980-5","BSGC",""
"1292","12051918","structure","Wang W, Cho HS, Kim R, Jancarik J, Yokota H, Nguyen HH, Grigoriev IV, Wemmer DE, Kim SH","Structural characterization of the reaction pathway in phosphoserine phosphatase: crystallographic \"snapshots\" of intermediate states.","Journal of Molecular Biology","2002","319(2)","421-31","BSGC",""
"1324","12021439","structure","Christendat D, Saridakis V, Kim Y, Kumar PA, Xu X, Semesi A, Joachimiak A, Arrowsmith CH, Edwards AM","The crystal structure of hypothetical protein MTH1491 from Methanobacterium thermoautotrophicum.","Protein Science","2002","11(6)","1409-14","MCSG","1l1s"
"1350","12011453","structure","Romanowski MJ, Soccio RE, Breslow JL, Burley SK","Crystal structure of the Mus musculus cholesterol-regulated START protein 4 (StarD4) containing a StAR-related lipid transfer domain.","Proceedings of the National Academy of Sciences of the United States of America","2002","99(10)","6949-54","NYSGXRC","1jss"
"1334","12001238","note","Pineda-Lucena A, Liao J, Wu B, Yee A, Cort JR, Kennedy MA, Edwards AM, Arrowsmith CH","NMR structure of the hypothetical protein encoded by the YjbJ gene from Escherichia coli.","Proteins","2002","47(4)","572-4","NESG","1jyg 1g8p 1t7p"
"1349","12001237","structure","Romanowski MJ, Bonanno JB, Burley SK","Crystal structure of the Streptococcus pneumoniae phosphomevalonate kinase, a member of the GHMP kinase superfamily.","Proteins","2002","47(4)","568-71","NYSGXRC","1k47"
"1365","12001236","structure","Romanowski MJ, Bonanno JB, Burley SK","Crystal structure of the Escherichia coli glucose-inhibited division protein B (GidB) reveals a methyltransferase fold.","Proteins","2002","47(4)","563-7","NYSGXRC","1jsx"
"1343","12001235","structure","Romanowski MJ, Burley SK","Crystal structure of the Escherichia coli shikimate kinase I (AroK) that confers sensitivity to mecillinam.","Proteins","2002","47(4)","558-62","NYSGXRC","1kag"
"1337","11991360","note","Szymczyna BR, Pineda-Lucena A, Mills JL, Szyperski T, Arrowsmith CH","1H, 13C, and 15N resonance assignments and secondary structure of the PWI domain from SRm160 using reduced dimensionality NMR.","Journal of Biomolecular NMR","2002","22(3)","299-300","NESG",""
"1341","11991359","note","McFeeters RL, Swapna GV, Montelione GT, Oswald RE","Semi-automated backbone resonance assignments of the extracellular ligand-binding domain of an ionotropic glutamate receptor.","Journal of Biomolecular NMR","2002","22(3)","297-8","NESG",""
"1345","11991357","note","Pineda-Lucena A, Yi GS, Chang X, Cort JR, Kennedy MA, Edwards AM, Arrowsmith CH","Solution structure of the hypothetical protein MTH0637 from Methanobacterium thermoautotrophicum.","Journal of Biomolecular NMR","2002","22(3)","291-4","NESG",""
"1348","11948793","structure","Romanowski MJ, Gibney SA, Burley SK","Crystal structure of the Escherichia coli SbmC protein that protects cells from the DNA replication inhibitor microcin B17.","Proteins","2002","47(3)","403-7","NYSGXRC","1jyh"
"1356","11939770","structure","Bhattacharyya S, Habibi-Nazhad B, Amegbey G, Slupsky CM, Yee A, Arrowsmith C, Wishart DS","Identification of a novel archaebacterial thioredoxin: determination of function through structure.","Biochemistry","2002","41(15)","4760-70","NESG","1ilo"
"1346","11910018","structure","Chance MR, Bresnick AR, Burley SK, Jiang JS, Lima CD, Sali A, Almo SC, Bonanno JB, Buglino JA, Boulton S, Chen H, Eswar N, He G, Huang R, Ilyin V, McMahan L, Pieper U, Ray S, Vidal M, Wang LK","Structural genomics: a pipeline for providing structures for the biologist.","Protein Science","2002","11(4)","723-38","NYSGXRC","1jr7"
"1315","11877432","structure","Zhang RG, Kim Y, Skarina T, Beasley S, Laskowski R, Arrowsmith C, Edwards A, Joachimiak A, Savchenko A","Crystal structure of Thermotoga maritima 0065, a member of the IclR transcriptional factor family.","Journal of Biological Chemistry","2002","277(21)","19183-90","MCSG","1jmr 1mkm"
"1289","11839305","structure","Martinez-Cruz LA, Dreyer MK, Boisvert DC, Yokota H, Martinez-Chantar ML, Kim R, Kim SH","Crystal structure of MJ1247 protein from M. jannaschii at 2.0 A resolution infers a molecular function of 3-hexulose-6-phosphate isomerase.","Structure","2002","10(2)","195-204","BSGC","1jeo"
"1291","11828325","structure","Schulze-Gahmen U, Kim SH","Structural basis for CDK6 activation by a virus-encoded cyclin.","Nature Structural & Molecular Biology","2002","9(3)","177-81","BSGC",""
"1355","11827487","structure","Lima CD","Analysis of the E. coli NifS CsdB protein at 2.0 A reveals the structural basis for perselenide and persulfide intermediate formation.","Journal of Molecular Biology","2002","315(5)","1199-208","NYSGXRC","1kmj"
"1302","11756461","structure","Huang CC, Smith CV, Glickman MS, Jacobs WR, Sacchettini JC","Crystal structures of mycolic acid cyclopropane synthases from Mycobacterium tuberculosis.","Journal of Biological Chemistry","2002","277(13)","11559-69","TB",""
"1321","11731804","structure","Korolev S, Ikeguchi Y, Skarina T, Beasley S, Arrowsmith C, Edwards A, Joachimiak A, Pegg AE, Savchenko A","The crystal structure of spermidine synthase with a multisubstrate adduct inhibitor.","Nature Structural & Molecular Biology","2002","9(1)","27-31","MCSG","1inl 1jq3"
"1419","11824762","note","Swapna GV, Shukla K, Huang YJ, Ke H, Xia B, Inouye M, Montelione GT","Resonance assignments for cold-shock protein ribosome-binding factor A (RbfA) from Escherichia coli.","Journal of Biomolecular NMR","2001","21(4)","389-90","NESG","1kkg"
"1427","11746696","structure","Das K, Xiao R, Wahlberg E, Hsu F, Arrowsmith CH, Montelione GT, Arnold E","X-ray crystal structure of MTH938 from Methanobacterium thermoautotrophicum at 2.2 A resolution reveals a novel tertiary protein fold.","Proteins","2001","45(4)","486-8","NESG","1ihn"
"1379","11722571","structure","Cort JR, Mariappan SV, Kim CY, Park MS, Peat TS, Waldo GS, Terwilliger TC, Kennedy MA","Solution structure of Pyrobaculum aerophilum DsrC, an archaeal homologue of the gamma subunit of dissimilatory sulfite reductase.","European Journal of Biochemistry","2001","268(22)","5842-50","NESG","1ji8"
"1398","11714269","structure","Du X, Wang W, Kim R, Yakota H, Nguyen H, Kim SH","Crystal structure and mechanism of catalysis of a pyrazinamidase from Pyrococcus horikoshii.","Biochemistry","2001","40(47)","14166-72","BSGC",""
"1384","11709173","structure","Zhang RG, Skarina T, Katz JE, Beasley S, Khachatryan A, Vyas S, Arrowsmith CH, Clarke S, Edwards A, Joachimiak A, Savchenko A","Structure of Thermotoga maritima stationary phase survival protein SurE: a novel acid phosphatase.","Structure","2001","9(11)","1095-106","MCSG","1ilv"
"1421","11698677","structure","Bonanno JB, Edo C, Eswar N, Pieper U, Romanowski MJ, Ilyin V, Gerchman SE, Kycia H, Studier FW, Sali A, Burley SK","Structural genomics of enzymes involved in sterol/isoprenoid biosynthesis.","Proceedings of the National Academy of Sciences of the United States of America","2001","98(23)","12896-901","NYSGXRC","1i9a"
"1418","11693569","structure","Lee GM, Edwards AM, Arrowsmith CH, McIntosh LP","NMR-based structure of the conserved protein MTH865 from the archaeon Methanobacterium thermoautotrophicum.","Journal of Biomolecular NMR","2001","21(1)","63-6","NESG","1iio"
"1387","11679764","structure","Osipiuk J, Gornicki P, Maj L, Dementieva I, Laskowski R, Joachimiak A","Streptococcus pneumonia YlxR at 1.35 A shows a putative new fold.","Acta Crystallographica Section D: Biological Crystallography","2001","57(Pt 11)","1747-51","MCSG","1g2r"
"1417","11575936","structure","Greenfield NJ, Huang YJ, Palm T, Swapna GV, Monleon D, Montelione GT, Hitchcock-DeGregori SE","Solution NMR structure and folding dynamics of the N terminus of a rat non-muscle alpha-tropomyosin in an engineered chimeric protein.","Journal of Molecular Biology","2001","312(4)","833-47","NESG","1ihq"
"1395","11546873","structure","Kim VN, Kataoka N, Dreyfuss G","Role of the nonsense-mediated decay factor hUpf3 in the splicing-dependent exon-exon junction complex.","Science","2001","293(5536)","1832-6","BSGC",""
"1399","11514679","structure","Frankenberg RJ, Hsu TS, Yakota H, Kim R, Clark DS","Chemical denaturation and elevated folding temperatures are required for wild-type activity and stability of recombinant Methanococcus jannaschii 20S proteasome.","Protein Science","2001","10(9)","1887-96","BSGC",""
"1425","11461703","structure","Kamada K, Shu F, Chen H, Malik S, Stelzer G, Roeder RG, Meisterernst M, Burley SK","Crystal structure of negative cofactor 2 recognizing the TBP-DNA transcription complex.","Cell","2001","106(1)","71-81","NYSGXRC","1jfi"
"1385","11440716","structure","Dodson KW, Pinkner JS, Rose T, Magnusson G, Hultgren SJ, Waksman G","Structural basis of the interaction of the pyelonephritic E. coli adhesin to its human kidney receptor","Cell","2001","105(6)","733-43","MCSG","1j8r"
"1396","11438683","structure","Cho H, Wang W, Kim R, Yokota H, Damo S, Kim SH, Wemmer D, Kustu S, Yan D","BeF(3)(-) acts as a phosphate analog in proteins phosphorylated on aspartate: structure of a BeF(3)(-) complex with phosphoserine phosphatase.","Proceedings of the National Academy of Sciences of the United States of America","2001","98(15)","8525-30","BSGC",""
"1400","11343283","structure","Du X, Frei H, Kim SH","Comparison of nitrophenylethyl and hydroxyphenacyl caging groups.","Biopolymers","2001","62(3)","147-9","BSGC",""
"1422","11330819","note","Sahasrabudhe PV, Xiao R, Montelione GT","Resonance assignments for the N-terminal domain from human RNA-binding protein with multiple splicing (RBP-MS).","Journal of Biomolecular NMR","2001","19(3)","285-6","NESG",""
"1394","11266624","structure","Cave JW, Cho HS, Batchelder AM, Yokota H, Kim R, Wemmer DE","Solution nuclear magnetic resonance structure of a protein disulfide oxidoreductase from Methanococcus jannaschii.","Protein Science","2001","10(2)","384-96","BSGC",""
"1393","11254389","structure","Anderson DH, Harth G, Horwitz MA, Eisenberg D","An interfacial mechanism and a class of inhibitors inferred from two crystal structures of the Mycobacterium tuberculosis 30 kDa major secretory protein (Antigen 85B), a mycolyl transferase.","Journal of Molecular Biology","2001","307(2)","671-81","TB",""
"1397","11170642","structure","Dreyer MK, Borcherding DR, Dumont JA, Peet NP, Tsay JT, Wright PS, Bitonti AJ, Shen J, Kim SH","Crystal structure of human cyclin-dependent kinase 2 in complex with the adenine-derived inhibitor H717.","Journal of Medicinal Chemistry","2001","44(4)","524-30","BSGC",""
"1386","11063748","structure","Saridakis V, Christendat D, Kimber MS, Dharamsi A, Edwards AM, Pai EF","Insights into ligand binding and catalysis of a central step in NAD+ synthesis: structures of Methanobacterium thermoautotrophicum NMN adenylyltransferase complexes","Journal of Biological Chemistry","2001","276(10)","7225-32","MCSG","1ej2"
"1414","","structure","Liu ZJ, Vysotski ES, Rose J, Lee J, Wang BC","Crystal Structure of the Calcium-Regulated Photoprotein Obelin Solved at 1.1A Resolution: Implications for the Mechanism of Bioluminescence","Books and Proceedings","2001","","","SECSG",""
"1455","12836677","structure","Cort JR, Yee A, Edwards AM, Arrowsmith CH, Kennedy MA","NMR structure determination and structure-based functional characterization of conserved hypothetical protein MTH1175 from Methanobacterium thermoautotrophicum.","Journal of Structural and Functional Genomics","2000","1(1)","15-25","NESG","1eo1"
"1458","11206077","structure","Teplova M, Tereshko V, Sanishvili R, Joachimiak A, Bushueva T, Anderson WF, Egli M","The structure of the yrdC gene product from Escherichia coli reveals a new fold and suggests a role in RNA binding.","Protein Science","2000","9(12)","2557-66","MCSG","1hru"
"1448","11163218","structure","Yeo HJ, Savvides SN, Herr AB, Lanka E, Waksman G","Crystal structure of the hexameric traffic ATPase of the Helicobacter pylori type IV secretion system.","Molecular Cell","2000","6(6)","1461-72","MCSG","1g6o"
"1451","11114201","structure","Du X, Choi IG, Kim R, Wang W, Jancarik J, Yokota H, Kim SH","Crystal structure of an intracellular protease from Pyrococcus horikoshii at 2-A resolution.","Proceedings of the National Academy of Sciences of the United States of America","2000","97(26)","14079-84","BSGC",""
"1434","11101899","structure","Groft CM, Beckmann R, Sali A, Burley SK","Crystal structures of ribosome anti-association factor IF6.","Nature Structural & Molecular Biology","2000","7(12)","1156-64","NYSGXRC","1g62"
"1438","11081518","structure","Xu Y, Tao X, Shen B, Horng T, Medzhitov R, Manley JL, Tong L","Structural basis for signal transduction by the Toll/interleukin-1 receptor domains.","Nature","2000","408(6808)","111-5","NESG","1fyv 1fyw 1fyx"
"1441","11027132","structure","Adler M, Davey DD, Phillips GB, Kim SH, Jancarik J, Rumennik G, Light DR, Whitlow M","Preparation, characterization, and the crystal structure of the inhibitor ZK-807834 (CI-1031) complexed with factor Xa.","Biochemistry","2000","39(41)","12534-42","BSGC",""
"1445","11024175","structure","Scavetta RD, Thomas CB, Walsh MA, Szegedi S, Joachimiak A, Gumport RI, Churchill ME","Structure of RsrI methyltransferase, a member of the N6-adenine beta class of DNA methyltransferases.","Nucleic Acids Research","2000","28(20)","3950-61","MCSG","1eg2"
"1460","10997908","structure","Lai L, Yokota H, Hung LW, Kim R, Kim SH","Crystal structure of archaeal RNase HII: a homologue of human major RNase H.","Structure","2000","8(8)","897-904","BSGC","1eke"
"1439","10981636","structure","Falke JJ, Kim SH","Structure of a conserved receptor domain that regulates kinase activity: the cytoplasmic domain of bacterial taxis receptors.","Current Opinion in Structural Biology","2000","10(4)","462-9","BSGC",""
"1435","10964569","structure","Cort JR, Yee A, Edwards AM, Arrowsmith CH, Kennedy MA","Structure-based functional classification of hypothetical protein MTH538 from Methanobacterium thermoautotrophicum.","Journal of Molecular Biology","2000","302(1)","189-203","NESG","1eiw"
"1450","10902183","structure","Zhang C, Kim SH","The effect of dynamic receptor clustering on the sensitivity of biochemical signaling.","Books and Proceedings","2000","","353-64","BSGC",""
"1461","10861931","structure","Zhang C, Kim SH","A comprehensive analysis of the Greek key motifs in protein beta-barrels and beta-sandwiches.","Proteins","2000","40(3)","409-19","BSGC",""
"1443","10860512","structure","Kim R, Yokota H, Kim SH","Electrophoresis of proteins and protein-protein complexes in a native agarose gel.","Analytical Biochemistry","2000","282(1)","147-9","BSGC",""
"1447","10841541","structure","Minasov G, Teplova M, Stewart GC, Koonin EV, Anderson WF, Egli M","Functional implications from crystal structures of the conserved Bacillus subtilis protein Maf with and without dUTP","Proceedings of the National Academy of Sciences of the United States of America","2000","97(12)","6328-33","MCSG","1exc 1ex2"
"1430","10841539","structure","Mackereth CD, Arrowsmith CH, Edwards AM, McIntosh LP","Zinc-bundle structure of the essential RNA polymerase subunit RPB10 from Methanobacterium thermoautotrophicum.","Proceedings of the National Academy of Sciences of the United States of America","2000","97(12)","6316-21","NESG","1ef4"
"1431","10841538","structure","Yee A, Booth V, Dharamsi A, Engel A, Edwards AM, Arrowsmith CH","Solution structure of the RNA polymerase subunit RPB5 from Methanobacterium thermoautotrophicum.","Proceedings of the National Academy of Sciences of the United States of America","2000","97(12)","6311-5","NESG","1elk"
"1436","10827167","structure","Christendat D, Saridakis V, Dharamsi A, Bochkarev A, Pai EF, Arrowsmith CH, Edwards AM","Crystal structure of dTDP-4-keto-6-deoxy-D-hexulose 3,5-epimerase from Methanobacterium thermoautotrophicum complexed with dTDP.","Journal of Biological Chemistry","2000","275(32)","24608-12","NESG","1ep0 1epz"
"1446","10801492","structure","Walsh MA, Otwinowski Z, Perrakis A, Anderson PM, Joachimiak A","Structure of cyanase reveals that a novel dimeric and decameric arrangement of subunits is required for formation of the enzyme active site.","Structure","2000","8(5)","505-14","MCSG","1dwk 1dw9"
"1437","10706611","structure","Zhang C, Kim SH","Environment-dependent residue contact energies for proteins.","Proceedings of the National Academy of Sciences of the United States of America","2000","97(6)","2550-5","BSGC",""
"1442","10662688","structure","Meijer L, Thunnissen AM, White AW, Garnier M, Nikolic M, Tsai LH, Walter J, Cleverley KE, Salinas PC, Wu YZ, Biernat J, Mandelkow EM, Kim SH, Pettit GR","Inhibition of cyclin-dependent kinases, GSK-3beta and CK1 by hymenialdisine, a marine sponge constituent.","Chemistry & Biology","2000","7(1)","51-63","BSGC",""
"1463","10089318","structure","Gill HS, Pfluegl GM, Eisenberg D","Preliminary crystallographic studies on glutamine synthetase from Mycobacterium tuberculosis.","Acta Crystallographica Section D: Biological Crystallography","1999","55(Pt 4)","865-8","TB",""
"id","pmid","type","authors","title","journal","year","vol","pages","centers","pdb_ids"
"2888","27411547","method","Zhang M, Yu XW, Swapna GV, Xiao R, Zheng H, Sha C, Xu Y, Montelione GT","Efficient production of (2)H, (13)C, (15)N-enriched industrial enzyme Rhizopus chinensis lipase with native disulfide bonds.","Microbial cell factories","2016","15","123","NESG",""
"2900","27151863","method","Jacobs TM, Williams B, Williams T, Xu X, Eletsky A, Federizon JF, Szyperski T, Kuhlman B","Design of structurally distinct proteins using strategies inspired by evolution.","Science","2016","352","687-90","NESG",""
"2896","27050687","other","Adams PD, Aertgeerts K, Bauer C, Bell JA, Berman HM, Bhat TN, Blaney JM, Bolton E, Bricogne G, Brown D, Burley SK, Case DA, Clark KL, Darden T, Emsley P, Feher VA, Feng Z, Groom CR, Harris SF, Hendle J, Holder T, Joachimiak A, Kleywegt GJ, Krojer T, Marcotrigiano J, Mark AE, Markley JL, Miller M, Minor W, Montelione GT, Murshudov G, Nakagawa A, Nakamura H, Nicholls A, Nicklaus M, Nolte RT, Padyana AK, Peishoff CE, Pieniazek S, Read RJ, Shao C, Sheriff S, Smart O, Soisson S, Spurlino J, Stouch T, Svobodova R, Tempel W, Terwilliger TC, Tronrud D, Velankar S, Ward SC, Warren GL, Westbrook JD, Williams P, Yang H, Young J","Outcome of the First wwPDB/CCDC/D3R Ligand Validation Workshop.","Structure","2016","24","502-8","NESG",""
"2889","26873166","method","Basanta B, Chan KK, Barth P, King T, Sosnick TR, Hinshaw JR, Liu G, Everett JK, Xiao R, Montelione GT, Baker D","Introduction of a polar core into the de novo designed protein Top7.","Protein Science","2016","25","1299-307","NESG",""
"2894","26293815","other","Everett JK, Tejero R, Murthy SB, Acton TB, Aramini JM, Baran MC, Benach J, Cort JR, Eletsky A, Forouhar F, Guan R, Kuzin AP, Lee HW, Liu G, Mani R, Mao B, Mills JL, Montelione AF, Pederson K, Powers R, Ramelot T, Rossi P, Seetharaman J, Snyder D, Swapna GV, Vorobiev SM, Wu Y, Xiao R, Yang Y, Arrowsmith CH, Hunt JF, Kennedy MA, Prestegard JH, Szyperski T, Tong L, Montelione GT","A community resource of experimental data for NMR / X-ray crystal structure pairs.","Protein Science","2016","25","30-45","NESG",""
"2841","26798809","method","Luft JR, Wolfley JR, Franks EC, Lauricella AM, Gualtieri EJ, Snell EH, Xiao R, Everett JK, Montelione GT","The detection and subsequent volume optimization of biological nanocrystals.","Structural dynamics (Melville, N.Y.)","2015","2","041710","NESG",""
"2891","26650357","other","King IC, Gleixner J, Doyle L, Kuzin A, Hunt JF, Xiao R, Montelione GT, Stoddard BL, DiMaio F, Baker D","Precise assembly of complex beta sheet topologies from de novo designed building blocks.","eLife","2015","4","e11012","NESG",""
"2865","26422513","method","Keedy DA, Kenner LR, Warkentin M, Woldeyes RA, Hopkins JB, Thompson MC, Brewster AS, Van Benschoten AH, Baxter EL, Uervirojnangkoorn M, McPhillips SE, Song J, Alonso-Mori R, Holton JM, Weis WI, Brunger AT, Soltis SM, Lemke H, Gonzalez A, Sauter NK, Cohen AE, van den Bedem H, Thorne RE, Fraser JS","Mapping the conformational landscape of a dynamic enzyme by multitemperature and XFEL crystallography.","eLife","2015","4","e07574","JCSG",""
"2893","26396255","method","Lin YR, Koga N, Tatsumi-Koga R, Liu G, Clouser AF, Montelione GT, Baker D","Control over overall shape and size in de novo designed proteins.","Proceedings of the National Academy of Sciences of the United States of America","2015","112","E5478-85","NESG",""
"2892","26374198","method","Wolf C, Siegel JB, Tinberg C, Camarca A, Gianfrani C, Paski S, Guan R, Montelione G, Baker D, Pultz IS","Engineering of Kuma030: A Gliadin Peptidase That Rapidly Degrades Immunogenic Gliadin Peptides in Gastric Conditions.","Journal of the American Chemical Society","2015","137","13106-13","NESG",""
"2898","26293598","method","Eletsky A, Pulavarti SV, Beaumont V, Gollnick P, Szyperski T","Solution NMR Experiment for Measurement of (15)N-(1)H Residual Dipolar Couplings in Large Proteins and Supramolecular Complexes.","Journal of the American Chemical Society","2015","137","11242-5","NESG",""
"2853","26241692","method","Park IH, Venable JD, Steckler C, Cellitti SE, Lesley SA, Spraggon G, Brock A","Estimation of Hydrogen-Exchange Protection Factors from MD Simulation Based on Amide Hydrogen Bonding Analysis.","Journal of chemical information and modeling","2015","55","1914-25","JCSG",""
"2856","26227870","method","Didenko T, Proudfoot A, Dutta SK, Serrano P, Wüthrich K","Non-Uniform Sampling and J-UNIO Automation for Efficient Protein NMR Structure Determination.","Chemistry (Weinheim an der Bergstrasse, Germany)","2015","21","12363-9","JCSG",""
"2854","26218073","method","Pachov DV, van den Bedem H","Nullspace Sampling with Holonomic Constraints Reveals Molecular Mechanisms of Protein Gαs.","PLoS Computational Biology","2015","11","e1004361","JCSG",""
"2851","26213417","method","Budday D, Leyendecker S, van den Bedem H","Geometric analysis characterizes molecular rigidity in generic and non-generic protein configurations.","Journal of the mechanics and physics of solids","2015","83","36-47","JCSG",""
"2839","26151661","method","Venable JD, Steckler C, Ou W, Grünewald J, Agarwalla S, Brock A","Isotope-Coded Labeling for Accelerated Protein Interaction Profiling Using MS.","Analytical Chemistry","2015","87","7540-4","JCSG",""
"2848","26121406","method","Tang Y, Huang YJ, Hopf TA, Sander C, Marks DS, Montelione GT","Protein structure determination by combining sparse NMR data with evolutionary couplings.","Nature Methods","2015","12","751-754","NESG",""
"2850","26101955","other","Choi HW, Tian M, Song F, Venereau E, Preti A, Park SW, Hamilton K, Swapna GV, Manohar M, Moreau M, Agresti A, Gorzanelli A, De Marchis F, Wang H, Antonyak M, Micikas RJ, Gentile DR, Cerione RA, Schroeder FC, Montelione GT, Bianchi ME, Klessig DF","Aspirin's Active Metabolite Salicylic Acid Targets High Mobility Group Box 1 to Modulate Inflammatory Responses.","Molecular medicine (Cambridge, Mass.)","2015","21","526-35","NESG",""
"2843","26095030","other","Sali A, Berman HM, Schwede T, Trewhella J, Kleywegt G, Burley SK, Markley J, Nakamura H, Adams P, Bonvin AM, Chiu W, Peraro MD, Di Maio F, Ferrin TE, Grünewald K, Gutmanas A, Henderson R, Hummer G, Iwasaki K, Johnson G, Lawson CL, Meiler J, Marti-Renom MA, Montelione GT, Nilges M, Nussinov R, Patwardhan A, Rappsilber J, Read RJ, Saibil H, Schröder GF, Schwieters CD, Seidel CA, Svergun D, Topf M, Ulrich EL, Velankar S, Westbrook JD","Outcome of the First wwPDB Hybrid/Integrative Methods Task Force Workshop.","Structure","2015","23","1156-67","NESG",""
"2846","26081575","other","Huang YJ, Mao B, Xu F, Montelione GT","Guiding automated NMR structure determination using a global optimization metric, the NMR DP score.","Journal of Biomolecular NMR","2015","62","439-51","NESG",""
"2847","26071966","other","Rosato A, Vranken W, Fogh RH, Ragan TJ, Tejero R, Pederson K, Lee HW, Prestegard JH, Yee A, Wu B, Lemak A, Houliston S, Arrowsmith CH, Kennedy M, Acton TB, Xiao R, Liu G, Montelione GT, Vuister GW","The second round of Critical Assessment of Automated Structure Determination of Proteins by NMR: CASD-NMR-2013.","Journal of Biomolecular NMR","2015","62","413-24","NESG",""
"2844","26036565","other","Gutmanas A, Adams PD, Bardiaux B, Berman HM, Case DA, Fogh RH, Güntert P, Hendrickx PM, Herrmann T, Kleywegt GJ, Kobayashi N, Lange OF, Markley JL, Montelione GT, Nilges M, Ragan TJ, Schwieters CD, Tejero R, Ulrich EL, Velankar S, Vranken WF, Wedell JR, Westbrook J, Wishart DS, Vuister GW","NMR Exchange Format: a unified and open standard for representation of NMR restraint data.","Nature Structural & Molecular Biology","2015","22","433-4","NESG",""
"2845","26032236","other","Ragan TJ, Fogh RH, Tejero R, Vranken W, Montelione GT, Rosato A, Vuister GW","Analysis of the structural quality of the CASD-NMR 2013 entries.","Journal of Biomolecular NMR","2015","62","527-40","NESG",""
"2823","25825836","method","van den Bedem H, Fraser JS","Integrative, dynamic structural biology at atomic resolution-it's about time.","Nature Methods","2015","12","307-18","JCSG",""
"2827","25800744","method","Zheng H, Shabalin IG, Handing KB, Bujnicki JM, Minor W","Magnesium-binding architectures in RNA crystal structures: validation, binding preferences, classification and motif detection.","Nucleic Acids Research","2015","43","3789-801","CSGID+EFI+MCSG+NYSGRC",""
"2816","25665575","method","Deller MC, Rupp B","Models of protein-ligand crystal structures: trust, but verify.","Journal of computer-aided molecular design","2015","29","817-36","JCSG",""
"2813","25478971","method","Lasala R, Coudray N, Abdine A, Zhang Z, Lopez-Redondo M, Kirshenbaum R, Alexopoulos J, Zolnai Z, Stokes DL, Ubarretxena-Belandia I","Sparse and incomplete factorial matrices to screen membrane protein 2D crystallization.","Journal of Structural Biology","2015","189","123-34","TEMIMPS",""
"2809","25451037","other","Parmeggiani F, Huang PS, Vorobiev S, Xiao R, Park K, Caprari S, Su M, Seetharaman J, Mao L, Janjua H, Montelione GT, Hunt J, Baker D","A general computational approach for repeat protein design.","Journal of Molecular Biology","2015","427","563-75","NESG",""
"2796","25428766","method","Jaudzems K, Pedrini B, Geralt M, Serrano P, Wüthrich K","J-UNIO protocol used for NMR structure determination of the 206-residue protein NP_346487.1 from Streptococcus pneumoniae TIGR4.","Journal of Biomolecular NMR","2015","61","65-72","JCSG",""
"2795","25428764","method","Dutta SK, Serrano P, Proudfoot A, Geralt M, Pedrini B, Herrmann T, Wüthrich K","APSY-NMR for protein backbone assignment in high-throughput structural biology.","Journal of Biomolecular NMR","2015","61","47-53","JCSG",""
"2819","25372670","method","Mizianty MJ, Fan X, Yan J, Chalmers E, Woloschuk C, Joachimiak A, Kurgan L","Covering complete proteomes with X-ray structures: a current snapshot.","Acta Crystallographica Section D: Biological Crystallography","2014","70","2781-93","MCSG",""
"2821","25340959","method","Cao Y, Liang Y, Tanaka K, Nguyen CT, Jedrzejczak RP, Joachimiak A, Stacey G","The kinase LYK5 is a major chitin receptor in Arabidopsis and forms a chitin-induced complex with related kinase CERK1.","eLife","2014","3","e03766","MCSG",""
"2776","25114056","method","Fonseca R, Pachov DV, Bernauer J, van den Bedem H","Characterizing RNA ensembles from NMR data with kinematic models.","Nucleic Acids Research","2014","42","9562-72","JCSG",""
"2755","25089148","method","Trame CB, Dragovic M, Chiu HJ","Radiation Damage of Myoglobin Crystals in Weak Stationary Electric and Magnetic Fields.","Journal of physics. Conference series","2014","493","012029","JCSG",""
"2753","25043760","other","Ergel B, Gill ML, Brown L, Yu B, Palmer AG, Hunt JF","Protein Dynamics Control the Progression and Efficiency of the Catalytic Reaction Cycle of the Escherichia coli DNA-Repair Enzyme AlkB.","Journal of Biological Chemistry","2014","289","29584-601","NESG",""
"2750","25014715","method","Zallot R, Yazdani M, Goyer A, Ziemak MJ, Guan JC, McCarty DR, de Crecy-Lagard V, Gerdes S, Garrett TJ, Benach J, Hunt JF, Shintani DK, Hanson AD","Salvage of the thiamin pyrimidine moiety by plant TenA proteins lacking an active-site cysteine.","Biochemical Journal","2014","463","145-55","NESG",""
"2757","24988076","method","Fusco D, Barnum TJ, Bruno AE, Luft JR, Snell EH, Mukherjee S, Charbonneau P","Statistical analysis of crystallization database links protein physico-chemical features with crystallization mechanisms.","PLoS ONE","2014","9","e101123","NESG",""
"2738","24971458","method","Bruno AE, Ruby AM, Luft JR, Grant TD, Seetharaman J, Montelione GT, Hunt JF, Snell EH","Comparing chemistry to outcome: the development of a chemical distance metric, coupled with clustering and hierarchal visualization applied to macromolecular crystallography.","PLoS ONE","2014","9","e100782","NESG",""
"2747","24957597","method","Jaroszewski L, Koska L, Sedova M, Godzik A","PubServer: literature searches by homology.","Nucleic Acids Research","2014","42","W430-5","JCSG",""
"2751","24911101","method","Zallot R, Brochier-Armanet C, Gaston KW, Forouhar F, Limbach PA, Hunt JF, de Crécy-Lagard V","Plant, Animal, and Fungal Micronutrient Queuosine Is Salvaged by Members of the DUF2419 Protein Family.","ACS Chemical Biology","2014","9","1812-25","NESG",""
"2760","24904249","method","Yennamalli R, Arangarasan R, Bryden A, Gleicher M, Phillips GN","Using a commodity high-definition television for collaborative structural biology.","Journal of Applied Crystallography","2014","47","1153-1157","NATPRO+NatPro",""
"2737","24895853","other","Petrey D, Honig B","Structural bioinformatics of the interactome.","Annual review of biophysics","2014","43","193-210","NESG",""
"2663","24882744","method","Keedy DA, van den Bedem H, Sivak DA, Petsko GA, Ringe D, Wilson MA, Fraser JS","Crystal Cryocooling Distorts Conformational Heterogeneity in a Model Michaelis Complex of DHFR.","Structure","2014","22","899-910","JCSG",""
"2736","24789578","method","Sathyamoorthy B, Parish DM, Montelione GT, Xiao R, Szyperski T","Spatially selective heteronuclear multiple-quantum coherence spectroscopy for biomolecular NMR studies.","Chemphyschem : a European journal of chemical physics and physical chemistry","2014","15","1872-9","NESG",""
"2664","24721463","method","Almo SC, Love JD","Better and faster: improvements and optimization for mammalian recombinant protein production.","Current Opinion in Structural Biology","2014","26C","39-43","NYSGRC",""
"2651","24705591","other","Rajagopalan S, Wang C, Yu K, Kuzin AP, Richter F, Lew S, Miklos AE, Matthews ML, Seetharaman J, Su M, Hunt JF, Cravatt BF, Baker D","Design of activated serine-containing catalytic triads with atomic-level accuracy.","Nature Chemical Biology","2014","10","386-91","NESG",""
"2658","24699654","method","Echols N, Morshed N, Afonine PV, McCoy AJ, Miller MD, Read RJ, Richardson JS, Terwilliger TC, Adams PD","Automated identification of elemental ions in macromolecular crystal structures.","Acta Crystallographica Section D: Biological Crystallography","2014","70","1104-14","JCSG",""
"2871","24692152","method","Sušac L, Horst R, Wüthrich K","Solution-NMR characterization of outer-membrane protein A from E. coli in lipid bilayer nanodiscs and detergent micelles.","Chembiochem : a European journal of chemical biology","2014","15","995-1000","JCSG",""
"2728","24679526","method","Wolff S, Weissman JS, Dillin A","Differential scales of protein quality control.","Cell","2014","157","52-64","HOMEO",""
"2625","24656078","method","Prestegard JH, Agard DA, Moremen KW, Lavery LA, Morris LC, Pederson K","Sparse labeling of proteins: structural characterization from long range constraints.","Journal of magnetic resonance (San Diego, Calif. : 1997)","2014","241","32-40","NESG",""
"2752","24652590","method","Yang Z, Wang C, Zhou Q, An J, Hildebrandt E, Aleksandrov LA, Kappes JC, DeLucas LJ, Riordan JR, Urbatsch IL, Hunt JF, Brouillette CG","Membrane protein stability can be compromised by detergent interactions with the extramembranous soluble domains.","Protein Science","2014","23","769-89","NESG",""
"2631","24637746","method","Deller MC, Rupp B","Approaches to automated protein crystal harvesting.","Acta crystallographica. Section F, Structural biology communications","2014","70","133-55","JCSG",""
"2632","24598732","method","Jahandideh S, Jaroszewski L, Godzik A","Improving the chances of successful protein structure determination with a random forest classifier.","Acta Crystallographica Section D: Biological Crystallography","2014","70","627-35","JCSG",""
"2640","24590723","method","Binkowski TA, Jiang W, Roux B, Anderson WF, Joachimiak A","Virtual high-throughput ligand screening.","Methods in Molecular Biology","2014","1140","251-61","CSGID+MCSG",""
"2641","24590719","method","Tan K, Kim Y, Hatzos-Skintges C, Chang C, Cuff M, Chhor G, Osipiuk J, Michalska K, Nocek B, An H, Babnigg G, Bigelow L, Joachimiak G, Li H, Mack J, Makowska-Grzyska M, Maltseva N, Mulligan R, Tesar C, Zhou M, Joachimiak A","Salvage of failed protein targets by reductive alkylation.","Methods in Molecular Biology","2014","1140","189-200","CSGID+MCSG",""
"2637","24590717","method","Yee AA, Semesi A, Garcia M, Arrowsmith CH","Screening proteins for NMR suitability.","Methods in Molecular Biology","2014","1140","169-78","NESG",""
"2665","24590713","method","Beebe ET, Makino S, Markley JL, Fox BG","Automated cell-free protein production methods for structural studies.","Methods in Molecular Biology","2014","1140","117-35","MPP+TMPC",""
"2642","24590711","method","Makowska-Grzyska M, Kim Y, Maltseva N, Li H, Zhou M, Joachimiak G, Babnigg G, Joachimiak A","Protein Production for Structural Genomics Using E. coli Expression.","Methods in Molecular Biology","2014","1140","89-105","CSGID+MCSG",""
"2598","24590705","method","Zimmerman MD, Grabowski M, Domagalski MJ, Maclean EM, Chruszcz M, Minor W","Data management in the modern structural biology and biomedical research environment.","Methods in Molecular Biology","2014","1140","1-25","CSGID+MCSG+NYSGRC",""
"2715","24567391","method","Khafizov K, Madrid-Aliste C, Almo SC, Fiser A","Trends in structural coverage of the protein universe and the impact of the Protein Structure Initiative.","Proceedings of the National Academy of Sciences of the United States of America","2014","111","3733-8","NYSGRC",""
"2712","24509632","method","Miyaoka Y, Chan AH, Judge LM, Yoo J, Huang M, Nguyen TD, Lizarraga PP, So PL, Conklin BR","Isolation of single-base genome-edited human iPS cells without antibiotic selection.","Nature Methods","2014","11","291-3","STEMCELL",""
"2626","24496727","method","Wang B, Kennedy MA","Principal components analysis of protein sequence clusters.","Journal of Structural and Functional Genomics","2014","15","1-11","NESG",""
"2630","24474795","method","Fenwick RB, van den Bedem H, Fraser JS, Wright PE","Integrated description of protein dynamics from room-temperature X-ray crystallography and NMR.","Proceedings of the National Academy of Sciences of the United States of America","2014","111","E445-54","JCSG",""
"2726","24406170","method","Acharya C, Kufareva I, Ilatovskiy AV, Abagyan R","PeptiSite: a structural database of peptide binding sites in 4D.","Biochemical and biophysical research communications","2014","445","717-23","CHSAM+GPCR",""
"2623","24403054","other","Stark JL, Copeland JC, Eletsky A, Somerville GA, Szyperski T, Powers R","Identification of low-molecular-weight compounds inhibiting growth of corynebacteria: potential lead compounds for antibiotics.","ChemMedChem","2014","9","282-5","NESG",""
"2574","24395410","method","Takasuka TE, Walker JA, Bergeman LF, Meulen KA, Makino S, Elsen NL, Fox BG","Cell-free translation of biofuel enzymes.","Methods in Molecular Biology","2014","1118","71-95","TMPC",""
"2588","24392845","method","Mao B, Tejero R, Baker D, Montelione GT","Protein NMR Structures Refined with Rosetta Have Higher Accuracy Relative to Corresponding X-ray Crystal Structures.","Journal of the American Chemical Society","2014","136","1893-906","NESG",""
"2576","24372145","method","Zheng H, Hou J, Zimmerman MD, Wlodawer A, Minor W","The future of crystallography in drug discovery.","Expert Opin Drug Discov","2014","9","125-37","CSGID+MCSG+NYSGRC",""
"2696","24363322","method","Lang PT, Holton JM, Fraser JS, Alber T","Protein structural ensembles are revealed by redefining X-ray electron density noise.","Proceedings of the National Academy of Sciences of the United States of America","2014","111","237-42","CSMP",""
"2586","24327305","method","Snyder DA, Grullon J, Huang YJ, Tejero R, Montelione GT","The expanded FindCore method for identification of a core atom set for assessment of protein structure prediction.","Proteins","2014","82 Suppl 2","219-30","NESG",""
"2624","24323734","other","Huang YJ, Mao B, Aramini JM, Montelione GT","Assessment of template-based protein structure predictions in CASP10.","Proteins","2014","82 Suppl 2","43-56","NESG",""
"2697","24271400","method","Pieper U, Webb BM, Dong GQ, Schneidman-Duhovny D, Fan H, Kim SJ, Khuri N, Spill YG, Weinkam P, Hammel M, Tainer JA, Nilges M, Sali A","ModBase, a database of annotated comparative protein structure models and associated resources.","Nucleic Acids Research","2014","42","D336-46","CSMP+NYSGRC",""
"2730","24246499","method","Yap EH, Rosche T, Almo S, Fiser A","Functional clustering of immunoglobulin superfamily proteins with protein-protein interaction information calibrated hidden Markov model sequence profiles.","Journal of Molecular Biology","2014","426","945-61","NYSGRC",""
"2698","24225319","method","Seiler CY, Park JG, Sharma A, Hunter P, Surapaneni P, Sedillo C, Field J, Algar R, Price A, Steel J, Throop A, Fiacco M, LaBaer J","DNASU plasmid and PSI:Biology-Materials repositories: resources to accelerate biological research.","Nucleic Acids Research","2014","42","D1253-60","PSIMR",""
"2699","24225317","method","Saier MH, Reddy VS, Tamang DG, Västermark A","The transporter classification database.","Nucleic Acids Research","2014","42","D251-8","TransportPDB",""
"2541","24203341","method","Domagalski MJ, Zheng H, Zimmerman MD, Dauter Z, Wlodawer A, Minor W","The quality and validation of structures from structural genomics.","Methods in Molecular Biology","2014","1091","297-314","CSGID+MCSG+NYSGRC",""
"2627","24203336","method","Yang Y, Ramelot TA, Ni S, McCarrick RM, Kennedy MA","Applications of NMR-based PRE and EPR-based DEER spectroscopy to homodimer chain exchange characterization and structure determination.","Methods in Molecular Biology","2014","1091","215-27","NESG",""
"2573","24203331","method","Makino S, Beebe ET, Markley JL, Fox BG","Cell-free protein synthesis for functional and structural studies.","Methods in Molecular Biology","2014","1091","161-78","MPP+TMPC",""
"2579","24203321","other","Huang YJ, Acton TB, Montelione GT","DisMeta: a meta server for construct design and optimization.","Methods in Molecular Biology","2014","1091","3-16","NESG",""
"2653","24161950","method","Bjelic S, Kipnis Y, Wang L, Pianowski Z, Vorobiev S, Su M, Seetharaman J, Xiao R, Kornhaber G, Hunt JF, Tong L, Hilvert D, Baker D","Exploration of alternate catalytic mechanisms and optimization strategies for retroaldolase design.","Journal of Molecular Biology","2014","426","256-71","NESG",""
"2756","24155031","method","Song Y, Kenworthy AK, Sanders CR","Cholesterol as a co-solvent and a ligand for membrane proteins.","Protein Science","2014","23","1-22","MPSbyNMR",""
"2700","24153109","method","de Beer TA, Berka K, Thornton JM, Laskowski RA","PDBsum additions.","Nucleic Acids Research","2014","42","D292-6","MCSG",""
"2633","24123179","method","Taylor TJ, Tai CH, Huang YJ, Block J, Bai H, Kryshtafovych A, Montelione GT, Lee B","Definition and classification of evaluation units for CASP10.","Proteins","2014","82 Suppl 2","14-25","NESG",""
"2694","24055822","method","Sridharan R, Zuber J, Connelly SM, Mathew E, Dumont ME","Fluorescent approaches for understanding interactions of ligands with G protein coupled receptors.","Biochimica et biophysica acta","2014","1838","15-33","MPSBC",""
"2650","23933161","method","Borchers CH, Kast J, Foster LJ, Siu KW, Overall CM, Binkowski TA, Hildebrand WH, Scherer A, Mansoor M, Keown PA","The Human Proteome Organization Chromosome 6 Consortium: Integrating chromosome-centric and biology/disease driven strategies.","Journal of proteomics","2014","100","60-67","MCSG",""
"2764","","other","Deller, MC, Rupp B","Crystallisation of proteins and macromolecular complexes: Past, present and future","eLS","2014","","","JCSG",""
"2748","24330655","method","Rueda M, Orozco M, Totrov M, Abagyan R","BioSuper: a web tool for the superimposition of biomolecules and assemblies with rotational symmetry.","BMC Structural Biology","2013","13","32","CHSAM+GPCR",""
"2652","24330590","other","Ravcheev DA, Godzik A, Osterman AL, Rodionov DA","Polysaccharides utilization in human gut bacterium Bacteroides thetaiotaomicron: comparative genomics reconstruction of metabolic and regulatory networks.","BMC genomics","2013","14","873","JCSG",""
"2688","24290358","method","Coin I, Katritch V, Sun T, Xiang Z, Siu FY, Beyermann M, Stevens RC, Wang L","Genetically encoded chemical probes in cells reveal the binding path of urocortin-I to CRF class B GPCR.","Cell","2013","155","1258-69","GPCR",""
"2678","24197012","method","Ryan CJ, Cimermančič P, Szpiech ZA, Sali A, Hernandez RD, Krogan NJ","High-resolution network biology: connecting sequence with function.","Nature reviews. Genetics","2013","14","865-79","NYSGRC",""
"2693","24196967","method","Kevany BM, Tsybovsky Y, Campuzano ID, Schnier PD, Engel A, Palczewski K","Structural and functional analysis of the native peripherin-ROM1 complex isolated from photoreceptor cells.","Journal of Biological Chemistry","2013","288","36272-84","TEMIMPS",""
"2721","24189229","method","Mistry J, Kloppmann E, Rost B, Punta M","An estimated 5% of new protein structures solved today represent a new Pfam family.","Acta Crystallographica Section D: Biological Crystallography","2013","69","2186-93","NYCOMPS",""
"2552","24183018","other","Isacoff EY, Jan LY, Minor DL","Conduits of life's spark: a perspective on ion channel research since the birth of neuron.","Neuron","2013","80","658-74","CSMP",""
"2543","24139526","method","DePietro PJ, Julfayev ES, McLaughlin WA","Quantification of the impact of PSI:Biology according to the annotations of the determined structures.","BMC Structural Biology","2013","13","24","PSISBKB",""
"2717","24098102","method","Martínez-Jiménez F, Papadatos G, Yang L, Wallace IM, Kumar V, Pieper U, Sali A, Brown JR, Overington JP, Marti-Renom MA","Target prediction for an open access set of compounds active against Mycobacterium tuberculosis.","PLoS Computational Biology","2013","9","e1003253","NYSGRC",""
"2746","24086479","method","Ioerger TR, O'Malley T, Liao R, Guinn KM, Hickey MJ, Mohaideen N, Murphy KC, Boshoff HI, Mizrahi V, Rubin EJ, Sassetti CM, Barry CE, Sherman DR, Parish T, Sacchettini JC","Identification of new drug targets and resistance mechanisms in Mycobacterium tuberculosis.","PLoS ONE","2013","8","e75245","MTBI",""
"2741","24076406","method","Nwachukwu JC, Southern MR, Kiefer JR, Afonine PV, Adams PD, Terwilliger TC, Nettles KW","Improved crystallographic structures using extensive combinatorial refinement.","Structure","2013","21","1923-30","NHRs",""
"2537","24057978","method","Eschenfeldt WH, Makowska-Grzyska M, Stols L, Donnelly MI, Jedrzejczak R, Joachimiak A","New LIC vectors for production of proteins from genes containing rare codons.","Journal of Structural and Functional Genomics","2013","14","135-44","MCSG",""
"2571","24034303","method","Wlodawer A, Minor W, Dauter Z, Jaskolski M","Protein crystallography for aspiring crystallographers or how to avoid pitfalls and traps in macromolecular structure determination.","FEBS Journal","2013","280","5705-36","EFI+MCSG+NYSGRC",""
"2676","24021214","method","Lane JR, Chubukov P, Liu W, Canals M, Cherezov V, Abagyan R, Stevens RC, Katritch V","Structure-based ligand discovery targeting orthosteric and allosteric pockets of dopamine receptors.","Molecular pharmacology","2013","84","794-807","GPCR",""
"2727","24013930","method","Tumulka F, Roos C, Löhr F, Bock C, Bernhard F, Dötsch V, Abele R","Conformational stabilization of the membrane embedded targeting domain of the lysosomal peptide transporter TAPL for solution NMR.","Journal of Biomolecular NMR","2013","57","141-54","MPSbyNMR",""
"2615","24013487","method","Anton BP, Chang YC, Brown P, Choi HP, Faller LL, Guleria J, Hu Z, Klitgord N, Levy-Moonshine A, Maksad A, Mazumdar V, McGettrick M, Osmani L, Pokrzywa R, Rachlin J, Swaminathan R, Allen B, Housman G, Monahan C, Rochussen K, Tao K, Bhagwat AS, Brenner SE, Columbus L, de Crécy-Lagard V, Ferguson D, Fomenkov A, Gadda G, Morgan RD, Osterman AL, Rodionov DA, Rodionova IA, Rudd KE, Söll D, Spain J, Xu SY, Bateman A, Blumenthal RM, Bollinger JM, Chang WS, Ferrer M, Friedberg I, Galperin MY, Gobeill J, Haft D, Hunt J, Karp P, Klimke W, Krebs C, Macelis D, Madupu R, Martin MJ, Miller JH, O'Donovan C, Palsson B, Ruch P, Setterdahl A, Sutton G, Tate J, Yakunin A, Tchigvintsev D, Plata G, Hu J, Greiner R, Horn D, Sjölander K, Salzberg SL, Vitkup D, Letovsky S, Segrè D, DeLisi C, Roberts RJ, Steffen M, Kasif S","The COMBREX project: design, methodology, and initial results.","PLoS Biology","2013","11","e1001638","NESG",""
"2535","24010715","method","Montelione GT, Nilges M, Bax A, Güntert P, Herrmann T, Richardson JS, Schwieters CD, Vranken WF, Vuister GW, Wishart DS, Berman HM, Kleywegt GJ, Markley JL","Recommendations of the wwPDB NMR Validation Task Force.","Structure","2013","21","1563-70","NESG",""
"2702","24010712","method","Schwede T","Protein modeling: what happened to the \"protein structure gap\"?","Structure","2013","21","1531-40","PSISBKB",""
"2580","23978068","method","Neklesa TK, Noblin DJ, Kuzin A, Lew S, Seetharaman J, Acton TB, Kornhaber G, Xiao R, Montelione GT, Tong L, Crews CM","A bidirectional system for the dynamic small molecule control of intracellular fusion proteins.","ACS Chemical Biology","2013","8","2293-300","NESG",""
"2528","23956688","method","Li D, Shah ST, Caffrey M","Host Lipid and Temperature as Important Screening Variables for Crystallizing Integral Membrane Proteins in Lipidic Mesophases. Trials with Diacylglycerol Kinase.","Crystal Growth & Design","2013","13","2846-2857","MPID",""
"2722","23932201","method","Didenko T, Liu JJ, Horst R, Stevens RC, Wüthrich K","Fluorine-19 NMR of integral membrane proteins illustrated with studies of GPCRs.","Current Opinion in Structural Biology","2013","23","740-7","GPCR",""
"2654","23924187","method","Mills JH, Khare SD, Bolduc JM, Forouhar F, Mulligan VK, Lew S, Seetharaman J, Tong L, Stoddard BL, Baker D","Computational design of an unnatural amino acid dependent metalloprotein with atomic level accuracy.","Journal of the American Chemical Society","2013","135","13393-9","NESG",""
"2703","23917845","method","Merkley ED, Cort JR, Adkins JN","Cross-linking and mass spectrometry methodologies to facilitate structural biology: finding a path through the maze.","Journal of Structural and Functional Genomics","2013","14","77-90","PCSEP",""
"2521","23913260","method","van den Bedem H, Bhabha G, Yang K, Wright PE, Fraser JS","Automated identification of functional dynamic contact networks from X-ray crystallography.","Nature Methods","2013","10","896-902","JCSG",""
"2489","23897031","method","Tejero R, Snyder D, Mao B, Aramini JM, Montelione GT","PDBStat: a universal restraint converter and restraint analysis software package for protein NMR.","Journal of Biomolecular NMR","2013","56","337-51","NESG",""
"2520","23839514","method","Pedrini B, Serrano P, Mohanty B, Geralt M, Wüthrich K","NMR-profiles of protein solutions.","Biopolymers","2013","99","825-31","JCSG",""
"2534","23827138","method","Procko E, Hedman R, Hamilton K, Seetharaman J, Fleishman SJ, Su M, Aramini J, Kornhaber G, Hunt JF, Tong L, Montelione GT, Baker D","Computational design of a protein-based enzyme inhibitor.","Journal of Molecular Biology","2013","425","3563-75","NESG",""
"2493","23793158","method","Liu Q, Liu Q, Hendrickson WA","Robust structural analysis of native biological macromolecules from multi-crystal anomalous diffraction data.","Acta Crystallographica Section D: Biological Crystallography","2013","69","1314-32","NYCOMPS",""
"2551","23793149","method","White TA, Barty A, Stellato F, Holton JM, Kirian RA, Zatsepin NA, Chapman HN","Crystallographic data processing for free-electron laser sources.","Acta Crystallographica Section D: Biological Crystallography","2013","69","1231-40","CSMP",""
"2491","23773802","other","Waight AB, Czyzewski BK, Wang DN","Ion selectivity and gating mechanisms of FNT channels.","Current Opinion in Structural Biology","2013","23","499-506","NYCOMPS",""
"2495","23744946","method","Chang RL, Andrews K, Kim D, Li Z, Godzik A, Palsson BO","Structural systems biology evaluation of metabolic thermotolerance in Escherichia coli.","Science","2013","340","1220-3","JCSG",""
"2677","23691059","method","Seay K, Qi X, Zheng JH, Zhang C, Chen K, Dutta M, Deneroff K, Ochsenbauer C, Kappes JC, Littman DR, Goldstein H","Mice transgenic for CD4-specific human CD4, CCR5 and cyclin T1 expression: a new model for investigating HIV-1 transmission and treatment efficacy.","PLoS ONE","2013","8","e63537","NYSGRC",""
"2674","23685209","method","Menon V, Vallat BK, Dybas JM, Fiser A","Modeling proteins using a super-secondary structure library and NMR chemical shift information.","Structure","2013","21","891-9","NYSGRC",""
"2684","23642905","method","Almo SC, Garforth SJ, Hillerich BS, Love JD, Seidel RD, Burley SK","Protein production from the structural genomics perspective: achievements and future needs.","Current Opinion in Structural Biology","2013","23","335-44","NYSGRC",""
"2686","23639031","method","Schlebach JP, Peng D, Kroncke BM, Mittendorf KF, Narayan M, Carter BD, Sanders CR","Reversible folding of human peripheral myelin protein 22, a tetraspan membrane protein.","Biochemistry","2013","52","3229-41","MPSbyNMR",""
"2553","23631449","method","Janowski PA, Cerutti DS, Holton J, Case DA","Peptide crystal simulations reveal hidden dynamics.","Journal of the American Chemical Society","2013","135","7938-48","CSMP",""
"2705","23628285","method","Oxenoid K, Chou JJ","The present and future of solution NMR in investigating the structure and dynamics of channels and transporters.","Current Opinion in Structural Biology","2013","23","547-54","TJMP",""
"2565","23625495","method","Kufareva I, Stephens B, Gilliland CT, Wu B, Fenalti G, Hamel D, Stevens RC, Abagyan R, Handel TM","A novel approach to quantify G-protein-coupled receptor dimerization equilibrium using bioluminescence resonance energy transfer.","Methods in Molecular Biology","2013","1013","93-127","CHSAM+GPCR",""
"2561","23624946","method","Haas J, Roth S, Arnold K, Kiefer F, Schmidt T, Bordoli L, Schwede T","The Protein Model Portal--a comprehensive resource for protein structure and model information.","Database : the journal of biological databases and curation","2013","2013","bat031","PSISBKB",""
"2374","23562661","method","Gromek KA, Meddaugh HR, Wrobel RL, Suchy FP, Bingman CA, Primm JG, Fox BG","Improved expression and purification of sigma 1 receptor fused to maltose binding protein by alteration of linker sequence.","Protein Expression and Purification","2013","89","203-9","TMPC",""
"2375","23542644","method","Forouhar F, Arragain S, Atta M, Gambarelli S, Mouesca JM, Hussain M, Xiao R, Kieffer-Jaquinod S, Seetharaman J, Acton TB, Montelione GT, Mulliez E, Hunt JF, Fontecave M","Two Fe-S clusters catalyze sulfur insertion by radical-SAM methylthiotransferases.","Nature Chemical Biology","2013","9","333-8","NESG",""
"2442","23518667","method","Bellot G, McClintock MA, Chou JJ, Shih WM","DNA nanotubes for NMR structure determination of membrane proteins.","Nature Protocols","2013","8","755-70","MPSbyNMR",""
"2424","23506331","method","Kessans SA, Linhart MD, Matoba N, Mor T","Biological and biochemical characterization of HIV-1 Gag/dgp41 virus-like particles expressed in Nicotiana benthamiana.","Plant biotechnology journal","2013","11","681-690","MPID",""
"2461","23500887","method","Schenk AD, Philippsen A, Engel A, Walz T","A pipeline for comprehensive and automated processing of electron diffraction data in IPLT.","Journal of Structural Biology","2013","182","173-85","TEMIMPS",""
"2470","23442850","other","Wang DN, Stieglitz H, Marden J, Tamm LK","Benjamin Franklin, Philadelphia's favorite son, was a membrane biophysicist.","Biophysical Journal","2013","104","287-91","NYCOMPS",""
"2452","23433045","method","Fajardo JE, Fiser A","Protein structure based prediction of catalytic residues.","BMC Bioinformatics","2013","14","63","NYSGRC",""
"2414","23430643","other","Ward AB, Sali A, Wilson IA","Integrative structural biology","Science","2013","339","913-5","JCSG",""
"2453","23423792","method","Merkley ED, Baker ES, Crowell KL, Orton DJ, Taverner T, Ansong C, Ibrahim YM, Burnet MC, Cort JR, Anderson GA, Smith RD, Adkins JN","Mixed-isotope labeling with LC-IMS-MS for characterization of protein-protein interactions by chemical cross-linking.","Journal of the American Society for Mass Spectrometry","2013","24","444-9","PCSEP",""
"2441","23415558","method","Etzkorn M, Raschle T, Hagn F, Gelev V, Rice AJ, Walz T, Wagner G","Cell-free expressed bacteriorhodopsin in different soluble membrane mimetics: biophysical properties and NMR accessibility.","Structure","2013","21","394-401","MPSbyNMR",""
"2347","23381628","other","Pieper U, Schlessinger A, Kloppmann E, Chang GA, Chou JJ, Dumont ME, Fox BG, Fromme P, Hendrickson WA, Malkowski MG, Rees DC, Stokes DL, Stowell MH, Wiener MC, Rost B, Stroud RM, Stevens RC, Sali A","Coordinating the impact of structural genomics on the human α-helical transmembrane proteome.","Nature Structural & Molecular Biology","2013","20","135-8","CSMP+GPCR+MPID+MPSBC+MPSbyNMR+NYCOMPS+TEMIMPS+TMPC+TransportPDB",""
"2570","23378516","method","Padayatti PS, Wang L, Gupta S, Orban T, Sun W, Salom D, Jordan SR, Palczewski K, Chance MR","A hybrid structural approach to analyze ligand binding by the serotonin type 4 receptor (5-HT4).","Molecular & Cellular Proteomics","2013","12","1259-71","CHSAM",""
"2440","23368985","method","Barrett PJ, Chen J, Cho MK, Kim JH, Lu Z, Mathew S, Peng D, Song Y, Van Horn WD, Zhuang T, Sönnichsen FD, Sanders CR","The quiet renaissance of protein nuclear magnetic resonance.","Biochemistry","2013","52","1303-20","MPSbyNMR",""
"2379","23349097","method","Dey F, Cliff Zhang Q, Petrey D, Honig B","Toward a \"Structural BLAST\": Using structural relationships to infer function.","Protein Science","2013","22","359-66","NESG",""
"2388","23297747","method","MacNevin CJ, Gremyachinskiy D, Hsu CW, Li L, Rougie M, Davis TT, Hahn KM","Environment-sensing merocyanine dyes for live cell imaging applications.","Bioconjugate chemistry","2013","24","215-23","CELLMAT",""
"2439","23294159","method","Hagn F, Etzkorn M, Raschle T, Wagner G","Optimized phospholipid bilayer nanodiscs facilitate high-resolution structure determination of membrane proteins.","Journal of the American Chemical Society","2013","135","1919-25","MPSbyNMR",""
"2384","23280336","method","Paduch M, Koide A, Uysal S, Rizk SS, Koide S, Kossiakoff AA","Generating conformation-specific synthetic antibodies to trap proteins in selected functional states.","Methods","2013","60","3-14","CEBS",""
"2437","23274692","method","Hyberts SG, Robson SA, Wagner G","Exploring signal-to-noise ratio and sensitivity in non-uniformly sampled multi-dimensional NMR spectra.","Journal of Biomolecular NMR","2013","55","167-78","MPSbyNMR",""
"2352","23267047","method","Vahedi-Faridi A, Jastrzebska B, Palczewski K, Engel A","3D imaging and quantitative analysis of small solubilized membrane proteins and their complexes by transmission electron microscopy.","Journal of electron microscopy","2013","62","95-107","TEMIMPS",""
"2494","23250061","method","Hendrickson WA","Evolution of diffraction methods for solving crystal structures.","Acta Crystallographica Section A: Foundations of Crystallography","2013","69","51-9","NYCOMPS",""
"2311","23237917","other","Stevens RC, Cherezov V, Katritch V, Abagyan R, Kuhn P, Rosen H, Wüthrich K","The GPCR Network: a large-scale collaboration to determine human GPCR structure and function.","Nature reviews. Drug discovery","2013","12","25-34","GPCR",""
"2362","23232152","method","Oldfield CJ, Xue B, Van YY, Ulrich EL, Markley JL, Dunker AK, Uversky VN","Utilization of protein intrinsic disorder knowledge in structural proteomics.","Biochimica et biophysica acta","2013","1834","487-98","CESG",""
"2380","23193263","method","Zhang QC, Petrey D, Garzón JI, Deng L, Honig B","PrePPI: a structure-informed database of protein-protein interactions.","Nucleic Acids Research","2013","41","D828-33","NESG",""
"2381","23180051","method","Yang Y, Ramelot TA, Ni S, McCarrick RM, Kennedy MA","Measurement of rate constants for homodimer subunit exchange using double electron-electron resonance and paramagnetic relaxation enhancements.","Journal of Biomolecular NMR","2013","55","47-58","NESG",""
"2436","23155067","method","Lin C, Perrault SD, Kwak M, Graf F, Shih WM","Purification of DNA-origami nanostructures by rate-zonal centrifugation.","Nucleic Acids Research","2013","41","e40","MPSbyNMR",""
"2312","23140243","method","Katritch V, Cherezov V, Stevens RC","Structure-Function of the G Protein-Coupled Receptor Superfamily.","Accounts of Chemical Research","2013","53","531-56","GPCR",""
"2348","23132066","method","Stokes DL, Ubarretxena-Belandia I, Gonen T, Engel A","High-throughput methods for electron crystallography.","Methods in Molecular Biology","2013","955","273-96","TEMIMPS",""
"2350","23132065","method","Wisedchaisri G, Gonen T","Phasing electron diffraction data by molecular replacement: strategy for structure determination and refinement.","Methods in Molecular Biology","2013","955","243-72","TEMIMPS",""
"2460","23132064","method","Allen GS, Stokes DL","Modeling, docking, and fitting of atomic structures to 3D maps from cryo-electron microscopy.","Methods in Molecular Biology","2013","955","229-41","TEMIMPS",""
"2351","23132060","method","Gonen T","The collection of high-resolution electron diffraction data.","Methods in Molecular Biology","2013","955","153-69","TEMIMPS",""
"2331","23131591","other","Węglarz-Tomczak E, Poręba M, Byzia A, Berlicki L, Nocek B, Mulligan R, Joachimiak A, Drąg M, Mucha A","An integrated approach to the ligand binding specificity of Neisseria meningitidis M1 alanine aminopeptidase by fluorogenic substrate profiling, inhibitory studies and molecular modeling.","Biochimie","2013","95","419-28","MCSG",""
"2313","23097212","method","Horst R, Stanczak P, Stevens RC, Wüthrich K","β(2) -Adrenergic Receptor Solutions for Structural Biology Analyzed with Microscale NMR Diffusion Measurements.","Angewandte Chemie International Edition in English","2013","52","331-5","GPCR",""
"2434","22987358","method","Cymer F, Sanders CR, Schneider D","Analyzing oligomerization of individual transmembrane helices and of entire membrane proteins in E. coli: A hitchhiker's guide to GALLEX.","Methods in Molecular Biology","2013","932","259-76","MPSbyNMR",""
"2451","22987351","method","Fernandez-Fuentes N, Fiser A","A modular perspective of protein structures: application to fragment based loop modeling.","Methods in Molecular Biology","2013","932","141-58","NYSGRC",""
"2433","22716775","method","Roos C, Kai L, Proverbio D, Ghoshdastider U, Filipek S, Dötsch V, Bernhard F","Co-translational association of cell-free expressed membrane proteins with supplied lipid bilayers.","Molecular membrane biology","2013","30","75-89","MPSbyNMR",""
"2505","","method","Godzik A, Wilson IA","Genome, Proteome, and the Quest for a Full Structure-Function Description of an Organism","eLS","2013","","","JCSG",""
"2467","23099666","method","Pokkuluri PR, Yang X, Londer YY, Schiffer M","Pitfalls in the interpretation of structural changes in mutant proteins from crystal structures.","Journal of Structural and Functional Genomics","2012","13","227-32","MCSG",""
"2400","23093762","method","Holton JM, Nielsen C, Frankel KA","The point-spread function of fiber-coupled area detectors.","Journal of Synchrotron Radiation","2012","19","1006-11","CSMP",""
"2298","23089864","method","Reig AJ, Pires MM, Snyder RA, Wu Y, Jo H, Kulp DW, Butch SE, Calhoun JR, Szyperski TG, Solomon EI, Degrado WF","Alteration of the oxygen-dependent reactivity of de novo Due Ferri proteins.","Nature chemistry","2012","4","900-6","NESG",""
"2301","23086054","method","Gront D, Grabowski M, Zimmerman MD, Raynor J, Tkaczuk KL, Minor W","Assessing the accuracy of template-based structure prediction metaservers by comparison with structural genomics structures.","Journal of Structural and Functional Genomics","2012","13","213-25","MCSG",""
"2295","23025328","method","Venable JD, Okach L, Agarwalla S, Brock A","Subzero temperature chromatography for reduced back-exchange and improved dynamic range in amide hydrogen/deuterium exchange mass spectrometry.","Analytical Chemistry","2012","84","9601-8","JCSG",""
"2308","23023127","method","Zhang QC, Petrey D, Deng L, Qiang L, Shi Y, Thu CA, Bisikirska B, Lefebvre C, Accili D, Hunter T, Maniatis T, Califano A, Honig B","Structure-based prediction of protein-protein interactions on a genome-wide scale.","Nature","2012","490","556-60","NESG",""
"2329","23013770","method","de Crécy-Lagard V, Forouhar F, Brochier-Armanet C, Tong L, Hunt JF","Comparative genomic analysis of the DUF71/COG2102 family predicts roles in diphthamide biosynthesis and B12 salvage.","Biology direct","2012","7","32","NESG",""
"2422","22971942","method","Li D, Boland C, Aragao D, Walsh K, Caffrey M","Harvesting and cryo-cooling crystals of membrane proteins grown in lipidic mesophases for structure determination by macromolecular crystallography.","Journal of visualized experiments : JoVE","2012","","e4001","MPID",""
"2423","22971907","method","Li D, Boland C, Walsh K, Caffrey M","Use of a robot for high-throughput crystallization of membrane proteins in lipidic mesophases.","Journal of visualized experiments : JoVE","2012","","e4000","MPID",""
"2476","22962467","method","Goldberg T, Hamp T, Rost B","LocTree2 predicts localization for all domains of life.","Bioinformatics","2012","28","i458-i465","NYCOMPS",""
"2290","22940582","method","Shumilin IA, Cymborowski M, Chertihin O, Jha KN, Herr JC, Lesley SA, Joachimiak A, Minor W","Identification of unknown protein function using metabolite cocktail screening.","Structure","2012","20","1715-25","JCSG+MCSG",""
"2421","22931253","method","Khelashvili G, Albornoz PB, Johner N, Mondal S, Caffrey M, Weinstein H","Why GPCRs behave differently in cubic and lamellar lipidic mesophases.","Journal of the American Chemical Society","2012","134","15858-68","MPID",""
"2339","22905104","method","Binkowski TA, Marino SR, Joachimiak A","Predicting HLA class I non-permissive amino acid residues substitutions.","PLoS ONE","2012","7","e41710","MCSG",""
"2449","22899687","method","Horst JA, Pieper U, Sali A, Zhan L, Chopra G, Samudrala R, Featherstone JD","Strategic protein target analysis for developing drugs to stop dental caries.","Advances in dental research","2012","24","86-93","NYSGRC",""
"2446","22884106","method","Hattori M, Hibbs RE, Gouaux E","A fluorescence-detection size-exclusion chromatography-based thermostability assay for membrane protein precrystallization screening.","Structure","2012","20","1293-9","NYCOMPS",""
"2260","22871159","method","Richter F, Blomberg R, Khare SD, Kiss G, Kuzin AP, Smith AJ, Gallaher J, Pianowski Z, Helgeson RC, Grjasnow A, Xiao R, Seetharaman J, Su M, Vorobiev S, Lew S, Forouhar F, Kornhaber GJ, Hunt JF, Montelione GT, Tong L, Houk KN, Hilvert D, Baker D","Computational design of catalytic dyads and oxyanion holes for ester hydrolysis.","Journal of the American Chemical Society","2012","134","16197-206","NESG",""
"2448","22800408","method","Schneidman-Duhovny D, Kim SJ, Sali A","Integrative structural modeling with small angle X-ray scattering profiles.","BMC Structural Biology","2012","12","17","NYSGRC",""
"2272","22783824","method","Caffrey M, Li D, Dukkipati A","Membrane protein structure determination using crystallography and lipidic mesophases: recent advances and successes.","Biochemistry","2012","51","6266-88","MPID",""
"2268","22763450","other","Lyons JA, Aragão D, Slattery O, Pisliakov AV, Soulimane T, Caffrey M","Structural insights into electron transfer in caa3-type cytochrome oxidase.","Nature","2012","487","514-8","MPID",""
"2253","22752932","method","Serrano P, Pedrini B, Mohanty B, Geralt M, Herrmann T, Wüthrich K","The J-UNIO protocol for automated protein structure determination by NMR in solution.","Journal of Biomolecular NMR","2012","53","341-54","JCSG",""
"2231","22733734","method","Lange OF, Rossi P, Sgourakis NG, Song Y, Lee HW, Aramini JM, Ertekin A, Xiao R, Acton TB, Montelione GT, Baker D","Determination of solution structures of proteins up to 40 kDa using CS-Rosetta with sparse NMR data from deuterated samples.","Proceedings of the National Academy of Sciences of the United States of America","2012","109","10873-8","NESG",""
"2198","22665781","method","Thompson JM, Sgourakis NG, Liu G, Rossi P, Tang Y, Mills JL, Szyperski T, Montelione GT, Baker D","Accurate protein structure modeling using sparse NMR data and homologous structure information.","Proceedings of the National Academy of Sciences of the United States of America","2012","109","9875-80","NESG",""
"2297","22632833","method","Murphy GS, Mills JL, Miley MJ, Machius M, Szyperski T, Kuhlman B","Increasing sequence diversity with flexible backbone protein design: the complete redesign of a protein hydrophobic core.","Structure","2012","20","1086-96","NESG",""
"2229","22628655","method","Liu Q, Dahmane T, Zhang Z, Assur Z, Brasch J, Shapiro L, Mancia F, Hendrickson WA","Structures from anomalous diffraction of native biological macromolecules.","Science","2012","336","1033-7","NYCOMPS",""
"2230","22622032","method","Kloppmann E, Punta M, Rost B","Structural genomics plucks high-hanging membrane proteins.","Current Opinion in Structural Biology","2012","22","326-32","NYCOMPS",""
"2246","22618536","method","Braberg H, Webb BM, Tjioe E, Pieper U, Sali A, Madhusudhan MS","SALIGN: a web server for alignment of multiple protein sequences and structures.","Bioinformatics","2012","28","2072-3","NYSGRC",""
"2245","22609626","method","Klammt C, Maslennikov I, Bayrhuber M, Eichmann C, Vajpai N, Chiu EJ, Blain KY, Esquivies L, Kwon JH, Balana B, Pieper U, Sali A, Slesinger PA, Kwiatkowski W, Riek R, Choe S","Facile backbone structure determination of human membrane proteins by NMR spectroscopy.","Nature Methods","2012","9","834-+","NYSGRC",""
"2349","22572457","method","Ubarretxena-Belandia I, Stokes DL","Membrane protein structure determination by electron crystallography.","Current Opinion in Structural Biology","2012","22","520-8","TEMIMPS",""
"2233","22570414","method","Huang YJ, Rosato A, Singh G, Montelione GT","RPF: a quality assessment tool for protein NMR structures.","Nucleic Acids Research","2012","40","W542-6","NESG",""
"2221","22569591","other","Neves MA, Totrov M, Abagyan R","Docking and scoring with ICM: the benchmarking results and strategies for improvement.","Accounts of Chemical Research","2012","26","675-686","CHSAM+GPCR",""
"2363","22527514","method","Gifford LK, Carter LG, Gabanyi MJ, Berman HM, Adams PD","The Protein Structure Initiative Structural Biology Knowledgebase Technology Portal: a structural biology web resource.","Journal of Structural and Functional Genomics","2012","13","57-62","PSISBKB",""
"2213","22514186","method","Stokes-Rees I, Levesque I, Murphy FV, Yang W, Deacon A, Sliz P","Adapting federated cyberinfrastructure for shared data collection facilities in structural biology.","Journal of Synchrotron Radiation","2012","19","462-7","JCSG",""
"2234","22500193","other","Montelione GT","The Protein Structure Initiative: achievements and visions for the future.","F1000 biology reports","2012","4","7","NESG",""
"2222","22497303","other","Neves MA, Yeager M, Abagyan R","Unusual arginine formations in protein function and assembly: rings, strings, and stacks.","Journal of Physical Chemistry B","2012","116","7006-13","CHSAM+GPCR",""
"2227","22483119","other","Moore JO, Hendrickson WA","An asymmetry-to-symmetry switch in signal transmission by the histidine kinase receptor for TMAO.","Structure","2012","20","729-41","NYCOMPS",""
"2431","22480220","method","Andreas LB, Eddy MT, Chou JJ, Griffin RG","Magic-angle-spinning NMR of the drug resistant S31N M2 proton transporter from influenza A.","Journal of the American Chemical Society","2012","134","7215-8","MPSbyNMR",""
"2267","22479170","other","Glembo TJ, Farrell DW, Gerek ZN, Thorpe MF, Ozkan SB","Collective dynamics differentiates functional divergence in protein evolution.","PLoS Computational Biology","2012","8","e1002428","MPID",""
"2224","22467877","other","Cawston EE, Lam PC, Harikumar KG, Dong M, Ball AM, Augustine ML, Akgün E, Portoghese PS, Orry A, Abagyan R, Sexton PM, Miller LJ","Molecular basis for binding and subtype selectivity of 1,4-benzodiazepine antagonist ligands of the cholecystokinin receptor.","Journal of Biological Chemistry","2012","287","18618-35","CHSAM+GPCR",""
"2201","22445486","method","Chen Y, Sheng R, Källberg M, Silkov A, Tun MP, Bhardwaj N, Kurilova S, Hall RA, Honig B, Lu H, Cho W","Genome-wide functional annotation of dual-specificity protein- and lipid-binding modules that regulate protein interactions.","Molecular Cell","2012","46","226-37","NESG",""
"2178","22396634","method","Furnham N, Sillitoe I, Holliday GL, Cuff AL, Laskowski RA, Orengo CA, Thornton JM","Exploring the Evolution of Novel Enzyme Functions within Structurally Defined Protein Superfamilies.","PLoS Computational Biology","2012","8","e1002403","MCSG",""
"2243","22392983","method","Lukk T, Sakai A, Kalyanaraman C, Brown SD, Imker HJ, Song L, Fedorov AA, Fedorov EV, Toro R, Hillerich B, Seidel R, Patskovsky Y, Vetting MW, Nair SK, Babbitt PC, Almo SC, Gerlt JA, Jacobson MP","Homology models guide discovery of diverse enzyme specificities among dipeptide epimerases in the enolase superfamily.","Proceedings of the National Academy of Sciences of the United States of America","2012","109","4122-7","NYSGRC",""
"2193","22389115","method","Kobayashi H, Swapna GV, Wu KP, Afinogenova Y, Conover K, Mao B, Montelione GT, Inouye M","Segmental isotope labeling of proteins for NMR structural study using a protein S tag for higher expression and solubility.","Journal of Biomolecular NMR","2012","52","303-13","NESG",""
"2284","22342679","method","Haberstock S, Roos C, Hoevels Y, Dötsch V, Schnapp G, Pautsch A, Bernhard F.","A systematic approach to increase the efficiency of membrane protein production in cell-free expression systems","Protein Expression and Purification","2012","82","308-316","MPSbyNMR",""
"2285","22331404","method","Hyberts SG, Milbradt AG, Wagner AB, Arthanari H, Wagner G.","Application of iterative soft thresholding for fast reconstruction of NMR data non-uniformly sampled with multidimensional Poisson Gap scheduling","Journal of Biomolecular NMR","2012","52","315-27","MPSbyNMR",""
"2166","22325772","method","Rosato A, Aramini JM, Arrowsmith C, Bagaria A, Baker D, Cavalli A, Doreleijers JF, Eletsky A, Giachetti A, Guerry P, Gutmanas A, Güntert P, He Y, Herrmann T, Huang YJ, Jaravine V, Jonker HR, Kennedy MA, Lange OF, Liu G, Malliavin TE, Mani R, Mao B, Montelione GT, Nilges M, Rossi P, van der Schot G, Schwalbe H, Szyperski TA, Vendruscolo M, Vernon R, Vranken WF, de Vries S, Vuister GW, Wu B, Yang Y, Bonvin AM","Blind testing of routine, fully automated determination of protein structures from NMR data.","Structure","2012","20","227-36","NESG",""
"2252","22323224","method","Kufareva I, Abagyan R","Methods of protein structure comparison.","Methods in Molecular Biology","2012","857","231-57","CHSAM",""
"2364","22323219","method","Bordoli L, Schwede T","Automated protein structure modeling with SWISS-MODEL Workspace and the Protein Model Portal.","Methods in Molecular Biology","2012","857","107-36","PSISBKB",""
"2396","22322218","method","Chaudhary S, Pak JE, Gruswitz F, Sharma V, Stroud RM","Overexpressing human membrane proteins in stably transfected and clonal human embryonic kidney 293S cells.","Nature Protocols","2012","7","453-66","CSMP",""
"2310","22286688","method","Kim H, Webster C, Roberts JK, Kositsawat J, Hung LW, Terwilliger TC, Kim CY","Enhancement of crystallization with nucleotide ligands identified by dye-ligand affinity chromatography.","Journal of Structural and Functional Genomics","2012","13","71-9","MTBI",""
"2420","22286383","method","Johansson LC, Arnlund D, White TA, Katona G, Deponte DP, Weierstall U, Doak RB, Shoeman RL, Lomb L, Malmerberg E, Davidsson J, Nass K, Liang M, Andreasson J, Aquila A, Bajt S, Barthelmess M, Barty A, Bogan MJ, Bostedt C, Bozek JD, Caleman C, Coffee R, Coppola N, Ekeberg T, Epp SW, Erk B, Fleckenstein H, Foucar L, Graafsma H, Gumprecht L, Hajdu J, Hampton CY, Hartmann R, Hartmann A, Hauser G, Hirsemann H, Holl P, Hunter MS, Kassemeyer S, Kimmel N, Kirian RA, Maia FR, Marchesini S, Martin AV, Reich C, Rolles D, Rudek B, Rudenko A, Schlichting I, Schulz J, Seibert MM, Sierra RG, Soltau H, Starodub D, Stellato F, Stern S, Strüder L, Timneanu N, Ullrich J, Wahlgren WY, Wang X, Weidenspointner G, Wunderer C, Fromme P, Chapman HN, Spence JC, Neutze R","Lipidic phase membrane protein serial femtosecond crystallography.","Nature Methods","2012","9","263-5","MPID",""
"2365","22270457","method","Julfayev ES, McLaughlin RJ, Tao YP, McLaughlin WA","KB-Rank: efficient protein structure and functional annotation identification via text query.","Journal of Structural and Functional Genomics","2012","13","101-10","PSISBKB",""
"2430","22252484","method","Löhr F, Reckel S, Karbyshev M, Connolly PJ, Abdul-Manan N, Bernhard F, Moore JM, Dötsch V","Combinatorial triple-selective labeling as a tool to assist membrane protein backbone resonance assignment.","Journal of Biomolecular NMR","2012","52","197-210","MPSbyNMR",""
"2208","22248449","method","Behrmann E, Tao G, Stokes DL, Egelman EH, Raunser S, Penczek PA","Real-space processing of helical filaments in SPARX.","Journal of Structural Biology","2012","177","302-13","TEMIMPS",""
"2286","22221179","method","Lu Z, Van Horn WD, Chen J, Mathew S, Zent R, Sanders CR","Bicelles at low concentrations","Molecular Pharmacology","2012","9","752-761","MPSbyNMR",""
"2383","22175275","method","Rizk SS, Misiura A, Paduch M, Kossiakoff AA","Substance P derivatives as versatile tools for specific delivery of various types of biomolecular cargo.","Bioconjugate chemistry","2012","23","42-6","CEBS",""
"2144","22113924","method","Bagaria A, Jaravine V, Huang YJ, Montelione GT, Güntert P","Protein structure validation by generalized linear model root-mean-square deviation prediction.","Protein Science","2012","21","229-38","NESG",""
"2185","22104008","other","Deflorian F, Kumar TS, Phan K, Gao ZG, Xu F, Wu H, Katritch V, Stevens RC, Jacobson KA","Evaluation of molecular modeling of agonist binding in light of the crystallographic structure of an agonist-bound A2A adenosine receptor","Journal of Medicinal Chemistry","2012","55","538-52","GPCR",""
"2142","22092237","method","Der BS, Machius M, Miley MJ, Mills JL, Szyperski T, Kuhlman B","Metal-mediated affinity and orientation specificity in a computationally designed protein homodimer.","Journal of the American Chemical Society","2012","134","375-85","NESG",""
"2169","22080553","method","Kufareva I, Ilatovskiy AV, Abagyan R","Pocketome: an encyclopedia of small-molecule binding sites in 4D.","Nucleic Acids Research","2012","40","D535-40","CHSAM+GPCR",""
"2171","22032986","other","Katritch V, Cherezov V, Stevens RC","Diversity and modularity of G protein-coupled receptor structures.","Trends in pharmacological sciences","2012","33","17-27","GPCR",""
"2182","22006843","method","Furnham N, Sillitoe I, Holliday GL, Cuff AL, Rahman SA, Laskowski RA, Orengo CA, Thornton JM","FunTree: a resource for exploring the functional evolution of structurally defined enzyme superfamilies.","Nucleic Acids Research","2012","40","D776-82","MCSG",""
"2475","21987254","method","Assur Z, Hendrickson WA, Mancia F","Tools for coproducing multiple proteins in mammalian cells.","Methods in Molecular Biology","2012","801","173-87","NYCOMPS",""
"2110","21925484","method","Maréchal A, Meunier B, Lee D, Orengo C, Rich PR","Yeast cytochrome c oxidase: a model system to study mitochondrial forms of the haem-copper oxidase superfamily.","Biochimica et biophysica acta","2012","1817","620-8","MCSG",""
"2266","22933857","method","Höfer N, Aragão D, Lyons JA, Caffrey M","Membrane protein crystallization in lipidic mesophases. Hosting lipid effects on the crystallization and structure of a transmembrane peptide","Crystal Growth & Design","2011","11","1182-1192","MPID",""
"2051","22646073","method","Luft J, Snell EH, DeTitta GT","Lessons from high throughput protein crystallization screening: 10 years of practical experience","Expert Opin Drug Discov","2011","6","1-16","NESG",""
"2485","22587847","method","Price WN, Handelman SK, Everett JK, Tong SN, Bracic A, Luff JD, Naumov V, Acton T, Manor P, Xiao R, Rost B, Montelione GT, Hunt JF","Large-scale experimental studies show unexpected amino acid effects on protein expression and solubility in vivo in E. coli.","Microbial informatics and experimentation","2011","1","6","NESG",""
"2419","22197730","method","Hunter MS, Fromme P","Toward structure determination using membrane-protein nanocrystals and microcrystals.","Methods","2011","55","387-404","MPID",""
"2287","22084929","method","Zhuang T, Jap BK, Sanders CR.","Solution NMR approaches for establishing specificity of weak heterodimerization of membrane proteins","Journal of the American Chemical Society","2011","133","20571-20580","MPSbyNMR",""
"2131","22020785","method","Kryshtafovych A, Moult J, Bartual SG, Bazan JF, Berman H, Casteel DE, Christodoulou E, Everett JK, Hausmann J, Heidebrecht T, Hills T, Hui R, Hunt JF, Seetharaman J, Joachimiak A, Kennedy MA, Kim C, Lingel A, Michalska K, Montelione GT, Otero JM, Perrakis A, Pizarro JC, van Raaij MJ, Ramelot TA, Rousseau F, Tong L, Wernimont AK, Young J, Schwede T","Target highlights in CASP9: Experimental target structures for the critical assessment of techniques for protein structure prediction.","Proteins","2011","79 Suppl 10","6-20","MCSG",""
"2186","22007643","other","de Graaf C, Kooistra AJ, Vischer HF, Katritch V, Kuijer M, Shiroishi M, Iwata S, Shimamura T, Stevens RC, de Esch IJ, Leurs R","Crystal structure-based virtual screening for fragment-like ligands of the human histamine H(1) receptor","Journal of Medicinal Chemistry","2011","54","8195-8206","GPCR",""
"2128","22000511","other","Wisedchaisri G, Reichow SL, Gonen T","Advances in structural and functional analysis of membrane proteins by electron crystallography.","Structure","2011","19","1381-93","TEMIMPS",""
"2262","21998559","other","Gerek ZN, Ozkan SB","Change in allosteric network affects binding affinities of PDZ domains: analysis through perturbation response scanning.","PLoS Computational Biology","2011","7","e1002154","MPID",""
"2454","21987472","method","Schmidt T, Haas J, Gallo Cassarino T, Schwede T","Assessment of ligand-binding residue predictions in CASP9.","Proteins","2011","79 Suppl 10","126-36","PSISBKB",""
"2115","21918110","method","Fraser JS, van den Bedem H, Samelson AJ, Lang PT, Holton JM, Echols N, Alber T","Accessing protein conformational ensembles using room-temperature X-ray crystallography.","Proceedings of the National Academy of Sciences of the United States of America","2011","108","16247-52","JCSG",""
"2141","21917921","method","Chruszcz M, Maleki SJ, Majorek KA, Demas M, Bublin M, Solberg R, Hurlburt BK, Ruan S, Mattisohn CP, Breiteneder H, Minor W","Structural and Immunologic Characterization of Ara h 1, a Major Peanut Allergen.","Journal of Biological Chemistry","2011","286","39318-27","NYSGRC",""
"2109","21907284","method","Kim Y, Babnigg G, Jedrzejczak R, Eschenfeldt WH, Li H, Maltseva N, Hatzos-Skintges C, Gu M, Makowska-Grzyska M, Wu R, An H, Chhor G, Joachimiak A","High-throughput protein purification and quality assessment for crystallization.","Methods","2011","55","12-28","CSGID+MCSG",""
"2173","21893281","other","Xu F, Stevens RC","Trapping small caffeine in a large GPCR pocket.","Structure","2011","19","1204-7","GPCR",""
"2116","21866906","method","Kang DC, Venkataraman PA, Dumont ME, Maloney PC","Oligomeric State of the Oxalate Transporter, OxlT.","Biochemistry","2011","50","8445-53","MPSBC",""
"2226","21840396","method","Mancusso R, Karpowich NK, Czyzewski BK, Wang DN","Simple screening method for improving membrane protein thermostability.","Methods","2011","55","324-9","NYCOMPS",""
"2174","21827947","method","Kufareva I, Rueda M, Katritch V, Stevens RC, Abagyan R","Status of GPCR modeling and docking as reflected by community-wide GPCR Dock 2010 assessment.","Structure","2011","19","1108-26","CHSAM+GPCR",""
"2463","21826197","method","Bai J, Swartz DJ, Protasevich II, Brouillette CG, Harrell PM, Hildebrandt E, Gasser B, Mattanovich D, Ward A, Chang G, Urbatsch IL","A gene optimization strategy that enhances production of fully functional P-glycoprotein in Pichia pastoris.","PLoS ONE","2011","6","e22577","TransportPDB",""
"2270","21808424","other","Stepanov S, Hilgart M, Yoder DW, Makarov O, Becker M, Sanishvili R, Ogata CM, Venugopalan N, Aragão D, Caffrey M, Smith JL, Fischetti RF","Fast fluorescence techniques for crystallography beamlines.","Journal of Applied Crystallography","2011","44","772-778","MPID",""
"2101","21807498","method","Mancia F, Love J","High throughput platforms for structural genomics of integral membrane proteins.","Current Opinion in Structural Biology","2011","21","517-22","NYCOMPS",""
"2095","21779303","method","Cooper DR, Porebski PJ, Chruszcz M, Minor W","X-ray crystallography: Assessment and validation of protein-small molecule complexes for drug discovery.","Expert Opin Drug Discov","2011","6","771-782","CSGID+MCSG+NYSGRC",""
"2269","21772288","other","Rasmussen SG, DeVree BT, Zou Y, Kruse AC, Chung KY, Kobilka TS, Thian FS, Chae PS, Pardon E, Calinski D, Mathiesen JM, Shah ST, Lyons JA, Caffrey M, Gellman SH, Steyaert J, Skiniotis G, Weis WI, Sunahara RK, Kobilka BK","Crystal structure of the β2 adrenergic receptor-Gs protein complex.","Nature","2011","477","549-55","MPID",""
"2264","21752635","method","Fromme P, Spence JC","Femtosecond nanocrystallography using X-ray lasers for membrane protein structure determination.","Current Opinion in Structural Biology","2011","21","509-16","MPID",""
"2418","21743796","method","Li D, Lee J, Caffrey M","Crystallizing Membrane Proteins in Lipidic Mesophases. A Host Lipid Screen.","Crystal Growth & Design","2011","11","530-537","MPID",""
"2123","21742264","method","Wisedchaisri G, Gonen T","Fragment-based phase extension for three-dimensional structure determination of membrane proteins by electron crystallography.","Structure","2011","19","976-87","TEMIMPS",""
"2099","21740061","method","Janaratne TK, Okach L, Brock A, Lesley SA","Solubilization of Native Integral Membrane Proteins in Aqueous Buffer by Noncovalent Chelation with Monomethoxy Poly(ethylene glycol) (mPEG) Polymers.","Bioconjugate chemistry","2011","22","1513-8","JCSG",""
"2153","21719796","method","Gubellini F, Verdon G, Karpowich NK, Luff JD, Boël G, Gauthier N, Handelman SK, Ades SE, Hunt JF","Physiological response to membrane protein overexpression in E. coli.","Molecular & Cellular Proteomics","2011","10","M111.007930","NYCOMPS",""
"2197","21672961","method","Fischer M, Zhang QC, Dey F, Chen BY, Honig B, Petrey D","MarkUs: a server to navigate sequence-structure-function space.","Nucleic Acids Research","2011","39","W357-61","NESG",""
"2088","21671455","other","Cai XH, Jaroszewski L, Wooley J, Godzik A","Internal organization of large protein families: Relationship between the sequence, structure, and function-based clustering.","Proteins","2011","79","2389-402","JCSG",""
"2086","21645849","method","Mao B, Guan R, Montelione GT","Improved technologies now routinely provide protein NMR structures useful for molecular replacement.","Structure","2011","19","757-66","NESG",""
"2196","21609948","method","Zhang QC, Deng L, Fisher M, Guan J, Honig B, Petrey D","PredUs: a web server for predicting protein interfaces using structural neighbors.","Nucleic Acids Research","2011","39","W283-7","NESG",""
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"1940","20045057","method","Clark KM, Fedoriw N, Robinson K, Connelly SM, Randles J, Malkowski MG, DeTitta GT, Dumont ME","Purification of transmembrane proteins from Saccharomyces cerevisiae for X-ray crystallography.","Protein Expression and Purification","2010","71","207-23","CHTSB",""
"2195","20034113","other","Andersson CD, Chen BY, Linusson A","Mapping of ligand-binding cavities in proteins.","Proteins","2010","78","1408-22","NESG",""
"2014","20025250","method","Kissick DJ, Gualtieri EJ, Simpson GJ, Cherezov V","Nonlinear optical imaging of integral membrane protein crystals in lipidic mesophases.","Analytical Chemistry","2010","82","491-7","ATCG3D",""
"1849","20000319","method","Raman S, Huang YJ, Mao B, Rossi P, Aramini JM, Liu G, Montelione GT, Baker D","Accurate automated protein NMR structure determination using unassigned NOESY data.","Journal of the American Chemical Society","2010","132","202-7","NESG",""
"1878","19927322","method","Kahraman A, Morris RJ, Laskowski RA, Favia AD, Thornton JM","On the diversity of physicochemical environments experienced by identical ligands in binding pockets of unrelated proteins.","Proteins","2010","78","1120-36","MCSG",""
"1836","19923231","method","Lee DA, Rentzsch R, Orengo C","GeMMA: functional subfamily classification within superfamilies of predicted protein structural domains.","Nucleic Acids Research","2010","38","720-37","MCSG",""
"1813","19915800","method","Rossi P, Swapna GV, Huang YJ, Aramini JM, Anklin C, Conover K, Hamilton K, Xiao R, Acton TB, Ertekin A, Everett JK, Montelione GT","A microscale protein NMR sample screening pipeline.","Journal of Biomolecular NMR","2010","46","11-22","NESG",""
"1840","19906724","other","Cormier CY, Mohr SE, Zuo D, Hu Y, Rolfs A, Kramer J, Taycher E, Kelley F, Fiacco M, Turnbull G, LaBaer J","Protein Structure Initiative Material Repository: an open shared public resource of structural genomics plasmids for the biological community.","Nucleic Acids Research","2010","38","D743-9","PSIMR",""
"1835","19906693","method","Lees J, Yeats C, Redfern O, Clegg A, Orengo C","Gene3D: merging structure and function for a Thousand genomes.","Nucleic Acids Research","2010","38","D296-300","MCSG",""
"1809","19830594","method","Mao L, Vaiphei ST, Shimazu T, Schneider WM, Tang Y, Mani R, Roth MJ, Montelione GT, Inouye M","The E. coli single protein production system for production and structural analysis of membrane proteins.","Journal of Structural and Functional Genomics","2010","11","81-4","NESG",""
"1832","20663480","method","Chruszcz M, Borek D, Domagalski M, Otwinowski Z, Minor W","X-Ray Diffraction Experiment: The Last Experiment in the Structure Elucidation Process","Advances in Protein Chemistry and Structural Biology","2009","77","23-40","CSGID+MCSG",""
"1877","19997483","method","Capra JA, Laskowski RA, Thornton JM, Singh M, Funkhouser TA","Predicting protein ligand binding sites by combining evolutionary sequence conservation and 3D structure.","PLoS Computational Biology","2009","5","e1000585","MCSG",""
"1894","19950959","method","Stanczak P, Horst R, Serrano P, Wüthrich K.","NMR characterization of membrane protein-detergent micelle solutions by use of microcoil equipment.","Journal of the American Chemical Society","2009","131","18450-6","JCSG",""
"1842","19892197","method","Goren MA, Nozawa A, Makino S, Wrobel RL, Fox BG","Cell-free translation of integral membrane proteins into unilamelar liposomes.","Methods in Enzymology","2009","463","647-73","CESG",""
"1868","19864631","method","Das R, André I, Shen Y, Wu Y, Lemak A, Bansal S, Arrowsmith CH, Szyperski T, Baker D","Simultaneous prediction of protein folding and docking at high resolution.","Proceedings of the National Academy of Sciences of the United States of America","2009","106","18978-83","NESG",""
"1824","19859826","method","Punta M, Love J, Handelman S, Hunt JF, Shapiro L, Hendrickson WA, Rost B","Structural genomics target selection for the New York consortium on membrane protein structure.","Journal of Structural and Functional Genomics","2009","10","255-68","NYCOMPS",""
"1808","19856129","method","Mao L, Tang Y, Vaiphei ST, Shimazu T, Kim SG, Mani R, Fakhoury E, White E, Montelione GT, Inouye M","Production of membrane proteins for NMR studies using the condensed single protein (cSPP) production system.","Journal of Structural and Functional Genomics","2009","10","281-289","NESG",""
"1805","19770508","method","van den Bedem H, Dhanik A, Latombe JC, Deacon AM","Modeling discrete heterogeneity in X-ray diffraction data by fitting multi-conformers.","Acta Crystallographica Section D: Biological Crystallography","2009","65","1107-17","JCSG",""
"1802","19765976","method","Joachimiak A","High-throughput crystallography for structural genomics.","Current Opinion in Structural Biology","2009","19","573-84","MCSG",""
"1794","19760663","method","Chang Y, Mead D, Dhodda V, Brumm P, Fox BG","One-plasmid tunable Co-expression for mycobacterial protein-protein interaction studies.","Protein Science","2009","18","2316-25","CESG",""
"1872","19758472","method","Bromberg Y, Rost B","Correlating protein function and stability through the analysis of single amino acid substitutions.","BMC Bioinformatics","2009","10 Suppl 8","S8","NESG",""
"1948","19751677","method","Barstow B, Ando N, Kim CU, Gruner SM","Coupling of pressure-induced structural shifts to spectral changes in a yellow fluorescent protein.","Biophysical Journal","2009","97","1719-27","CHTSB",""
"1772","19718014","method","Rosato A, Bagaria A, Baker D, Bardiaux B, Cavalli A, Doreleijers JF, Giachetti A, Guerry P, Güntert P, Herrmann T, Huang YJ, Jonker HR, Mao B, Malliavin TE, Montelione GT, Nilges M, Raman S, van der Schot G, Vranken WF, Vuister GW, Bonvin AM","CASD-NMR: critical assessment of automated structure determination by NMR.","Nature Methods","2009","6","625-6","NESG",""
"1799","19714201","method","Redfern OC, Dessailly BH, Dallman TJ, Sillitoe I, Orengo CA","FLORA: a novel method to predict protein function from structure in diverse superfamilies.","PLoS Computational Biology","2009","5","e1000485","MCSG",""
"1795","19701618","method","Quartley  E, Alexandrov  A, Mikucki  M, Buckner  FS, Hol  WG, DeTitta  GT, Phizicky  EM, Grayhack  EJ","Heterologous expression of L. major proteins in S. cerevisiae: a test of solubility, purity, and gene recoding.","Journal of Structural and Functional Genomics","2009","10","233-47","CHTSB",""
"1812","19679085","method","Cuff A, Redfern OC, Greene L, Sillitoe I, Lewis T, Dibley M, Reid A, Pearl F, Dallman T, Todd A, Garratt R, Thornton J, Orengo C","The CATH hierarchy revisited-structural divergence in domain superfamilies and the continuity of fold space.","Structure","2009","17","1051-62","MCSG",""
"1775","19642019","method","Schneider WM, Inouye M, Montelione GT, Roth MJ","Independently inducible system of gene expression for condensed single protein production (cSPP) suitable for high efficiency isotope enrichment.","Journal of Structural and Functional Genomics","2009","10","219-25","NESG",""
"1846","19636458","method","Du W, Li L, Nichols KP, Ismagilov RF","SlipChip.","Lab on a Chip","2009","9","2286-92","ATCG3D",""
"1814","19626714","method","Izarzugaza JM, Redfern OC, Orengo CA, Valencia A","Cancer-associated mutations are preferentially distributed in protein kinase functional sites.","Proteins","2009","77","892-903","MCSG",""
"1895","19623490","method","Han GW, Rife C, Sawaya MR","Applications of bioinformatics to protein structures: how protein structure and bioinformatics overlap.","Methods in Molecular Biology","2009","569","157-72","JCSG",""
"1954","19620987","method","Furnham N, Garavelli JS, Apweiler R, Thornton JM","Missing in action: enzyme functional annotations in biological databases.","Nature Chemical Biology","2009","5","521-5","MCSG",""
"1815","19614587","method","Dessailly BH, Reid AJ, Yeats C, Lees JG, Cuff A, Orengo CA","The evolution of protein functions and networks: a family-centric approach.","Biochemical Society transactions","2009","37","745-50","MCSG",""
"1871","19603796","method","Mills JL, Liu G, Skerra A, Szyperski T","NMR structure and dynamics of the engineered fluorescein-binding lipocalin FluA reveal rigidification of beta-barrel and variable loops upon enthalpy-driven ligand binding.","Biochemistry","2009","48","7411-9","NESG",""
"1774","19594422","other","Grabowski M, Chruszcz M, Zimmerman MD, Kirillova O, Minor W","Benefits of structural genomics for drug discovery research.","Infectious disorders drug targets","2009","9","459-74","CSGID+MCSG",""
"1782","19554626","method","Koszelak-Rosenblum  M, Krol  A, Mozumdar  N, Wunsch  K, Ferin  A, Cook  E, Veatch  CK, Nagel  R, Luft  JR, Detitta  GT, Malkowski  MG","Determination and application of empirically derived detergent phase boundaries to effectively crystallize membrane proteins.","Protein Science","2009","18","1828-39","CHTSB",""
"1859","19535414","method","Cherezov V, Hanson MA, Griffith MT, Hilgart MC, Sanishvili R, Nagarajan V, Stepanov S, Fischetti RF, Kuhn P, Stevens RC","Rastering strategy for screening and centring of microcrystal samples of human membrane proteins with a sub-10 microm size X-ray synchrotron beam.","Journal of the Royal Society, Interface / the Royal Society","2009","6 Suppl 5","S587-97","ATCG3D",""
"1766","19535342","method","Wu R, Richter S, Zhang RG, Anderson VJ, Missiakas D, Joachimiak A","Crystal Structure of Bacillus anthracis Transpeptidase Enzyme CapD.","Journal of Biological Chemistry","2009","284","24406-14","MCSG",""
"1946","19529790","method","Chen YF, Tate MW, Gruner SM","Facilitating protein crystal cryoprotection in thick-walled plastic capillaries by high-pressure cryocooling.","Journal of Applied Crystallography","2009","42","525-530","CHTSB",""
"1768","19523904","other","Dessailly BH, Nair R, Jaroszewski L, Fajardo JE, Kouranov A, Lee D, Fiser A, Godzik A, Rost B, Orengo C","PSI-2: structural genomics to cover protein domain family space.","Structure","2009","17","869-81","JCSG+NESG+MCSG",""
"1771","19517990","method","DiMaio FP, Soni AB, Phillips GN, Shavlik JW","Spherical-harmonic decomposition for molecular recognition in electron-density maps.","International journal of data mining and bioinformatics","2009","3","205-27","CESG",""
"1870","19499349","method","Wu Y, Ghosh A, Szyperski T","Clean absorption mode NMR data acquisition based on time-proportional phase incrementation.","Journal of Structural and Functional Genomics","2009","10","227-32","NESG",""
"1793","19497931","method","Lee W, Westler WM, Bahrami A, Eghbalnia HR, Markley JL","PINE-SPARKY: graphical interface for evaluating automated probabilistic peak assignments in protein NMR spectroscopy.","Bioinformatics","2009","25","2085-7","CESG",""
"1748","19461661","method","Michino M, Abola E, 2008 Participants GD, Brooks CL, Dixon JS, Moult J, Stevens RC","Community-wide assessment of GPCR structure modelling and ligand docking: GPCR Dock 2008.","Nature reviews. Drug discovery","2009","8","455-63","ATCG3D",""
"1955","19447117","method","Holliday GL, Mitchell JB, Thornton JM","Understanding the functional roles of amino acid residues in enzyme catalysis.","Journal of Molecular Biology","2009","390","560-77","MCSG",""
"1759","19436955","method","Wang L, Markley JL","Empirical correlation between protein backbone 15N and 13C secondary chemical shifts and its application to nitrogen chemical shift re-referencing.","Journal of Biomolecular NMR","2009","44","95-9","CESG",""
"1765","19425578","method","Columbus L, Lipfert J, Jambunathan K, Fox DA, Sim AY, Doniach S, Lesley SA","Mixing and matching detergents for membrane protein NMR structure determination.","Journal of the American Chemical Society","2009","131","7320-6","JCSG",""
"1776","19423702","other","Hurley JM, Woychik NA","Bacterial toxin HigB associates with ribosomes and mediates translation-dependent mRNA cleavage at A-rich sites.","Journal of Biological Chemistry","2009","284","18605-13","NESG",""
"1758","19407142","method","Park SY, Fung P, Nishimura N, Jensen DR, Fujii H, Zhao Y, Lumba S, Santiago J, Rodrigues A, Chow TF, Alfred SE, Bonetta D, Finkelstein R, Provart NJ, Desveaux D, Rodriguez PL, McCourt P, Zhu JK, Schroeder JI, Volkman BF, Cutler SR","Abscisic acid inhibits type 2C protein phosphatases via the PYR/PYL family of START proteins.","Science","2009","324","1068-71","CESG",""
"1816","19398323","method","Dessailly BH, Redfern OC, Cuff A, Orengo CA","Exploiting structural classifications for function prediction: towards a domain grammar for protein function.","Current Opinion in Structural Biology","2009","19","349-56","MCSG",""
"1740","19383142","method","Lorimer D, Raymond A, Walchli J, Mixon M, Barrow A, Wallace E, Grice R, Burgin A, Stewart L","Gene Composer: database software for protein construct design, codon engineering, and gene synthesis.","BMC Biotechnology","2009","9","36","ATCG3D",""
"1953","19369503","method","Andreini C, Bertini I, Cavallaro G, Holliday GL, Thornton JM","Metal-MACiE: a database of metals involved in biological catalysis.","Bioinformatics","2009","25","2088-9","MCSG",""
"1739","19365792","method","Fox BG, Blommel PG","Autoinduction of protein expression.","Current Protocols in Protein Science","2009","Chapter 5","Unit 5.23","CESG",""
"1847","19354215","method","Kreutz JE, Li L, Roach LS, Hatakeyama T, Ismagilov RF","Laterally mobile, functionalized self-assembled monolayers at the fluorous-aqueous interface in a plug-based microfluidic system: characterization and testing with membrane protein crystallization.","Journal of the American Chemical Society","2009","131","6042-3","ATCG3D",""
"1742","19352432","method","Wernimont A, Edwards A","In situ proteolysis to generate crystals for structure determination: an update.","PLoS ONE","2009","4","e5094","MCSG",""
"1737","19306341","method","Sharma S, Zheng H, Huang YJ, Ertekin A, Hamuro Y, Rossi P, Tejero R, Acton TB, Xiao R, Jiang M, Zhao L, Ma LC, Swapna GV, Aramini JM, Montelione GT","Construct optimization for protein NMR structure analysis using amide hydrogen/deuterium exchange mass spectrometry.","Proteins","2009","76","882-894","NESG",""
"1733","19288278","method","Montelione GT, Arrowsmith C, Girvin ME, Kennedy MA, Markley JL, Powers R, Prestegard JH, Szyperski T","Unique opportunities for NMR methods in structural genomics.","Journal of Structural and Functional Genomics","2009","10","101-106","CESG+NESG",""
"1730","19282963","method","Bahrami A, Assadi AH, Markley JL, Eghbalnia HR","Probabilistic interaction network of evidence algorithm and its application to complete labeling of peak lists from protein NMR spectroscopy.","PLoS Computational Biology","2009","5","e1000307","CESG",""
"1947","19258453","method","Kim CU, Barstow B, Tate MW, Gruner SM","Evidence for liquid water during the high-density to low-density amorphous ice transition.","Proceedings of the National Academy of Sciences of the United States of America","2009","106","4596-600","CHTSB",""
"1767","19243223","method","Pardee KI, Xu X, Reinking J, Schuetz A, Dong A, Liu S, Zhang R, Tiefenbach J, Lajoie G, Plotnikov AN, Botchkarev A, Krause HM, Edwards A","The structural basis of gas-responsive transcription by the human nuclear hormone receptor REV-ERBbeta.","PLoS Biology","2009","7","e43","MCSG",""
"1817","19226439","method","Loewenstein Y, Raimondo D, Redfern OC, Watson J, Frishman D, Linial M, Orengo C, Thornton J, Tramontano A","Protein function annotation by homology-based inference.","Genome Biology","2009","10","207","MCSG",""
"1725","19219566","method","Pieper U, Chiang R, Seffernick JJ, Brown SD, Glasner ME, Kelly L, Eswar N, Sauder JM, Bonanno JB, Swaminathan S, Burley SK, Zheng X, Chance MR, Almo SC, Gerlt JA, Raushel FM, Jacobson MP, Babbitt PC, Sali A","Target selection and annotation for the structural genomics of the amidohydrolase and enolase superfamilies.","Journal of Structural and Functional Genomics","2009","10","107-25","NYSGXRC",""
"1714","19217386","other","Schwede T, Sali A, Honig B, Levitt M, Berman HM, Jones D, Brenner SE, Burley SK, Das R, Dokholyan NV, Dunbrack RL, Fidelis K, Fiser A, Godzik A, Huang YJ, Humblet C, Jacobson MP, Joachimiak A, Krystek SR, Kortemme T, Kryshtafovych A, Montelione GT, Moult J, Murray D, Sanchez R, Sosnick TR, Standley DM, Stouch T, Vajda S, Vasquez M, Westbrook JD, Wilson IA","Outcome of a workshop on applications of protein models in biomedical research.","Structure","2009","17","151-9","JCSG+MCSG+NESG+NMHRCM+NYSGXRC",""
"1770","19210620","method","Prysak MH, Mozdzierz CJ, Cook AM, Zhu L, Zhang Y, Inouye M, Woychik NA","Bacterial toxin YafQ is an endoribonuclease that associates with the ribosome and blocks translation elongation through sequence-specific and frame-dependent mRNA cleavage.","Molecular Microbiology","2009","71","1071-87","NESG",""
"2155","19209228","method","Schlessinger A, Punta M, Yachdav G, Kajan L, Rost B","Improved disorder prediction by combination of orthogonal approaches.","PLoS ONE","2009","4","e4433","NYCOMPS",""
"1707","19194785","method","Nair R, Liu J, Soong TT, Acton TB, Everett JK, Kouranov A, Fiser A, Godzik A, Jaroszewski L, Orengo C, Montelione GT, Rost B","Structural genomics is the largest contributor of novel structural leverage.","Journal of Structural and Functional Genomics","2009","10","181-91","JCSG+MCSG+NESG+NYCOMPS+NYSGXRC",""
"1861","19141277","method","Hanson MA, Stevens RC","Discovery of new GPCR biology: one receptor structure at a time.","Structure","2009","17","8-14","ATCG3D",""
"1709","19140147","method","Wu Y, Ghosh A, Szyperski T","Clean absorption-mode NMR data acquisition.","Angewandte Chemie International Edition in English","2009","48","1479-83","NESG",""
"1818","19135455","method","Addou S, Rentzsch R, Lee D, Orengo CA","Domain-based and family-specific sequence identity thresholds increase the levels of reliable protein function transfer.","Journal of Molecular Biology","2009","387","416-30","MCSG",""
"1779","19131332","method","Park SW, Liu PP, Forouhar F, Vlot AC, Tong L, Tietjen K, Klessig DF","Use of a synthetic salicylic acid analog to investigate the roles of methyl salicylate and its esterases in plant disease resistance.","Journal of Biological Chemistry","2009","284","7307-17","NESG",""
"1732","19130299","method","Markley JL, Aceti DJ, Bingman CA, Fox BG, Frederick RO, Makino S, Nichols KW, Phillips GN, Primm JG, Sahu SC, Vojtik FC, Volkman BF, Wrobel RL, Zolnai Z","The center for eukaryotic structural genomics.","Journal of Structural and Functional Genomics","2009","10","165-79","CESG",""
"1656","19096173","other","Bech  M, Bunk  O, David  C, Ruth  R, Rifkin  J, Loewen  R, Feidenhans'l  R, Pfeiffer  F","Hard X-ray phase-contrast imaging with the Compact Light Source based on inverse Compton X-rays.","Journal of Synchrotron Radiation","2009","16","43-7","ATCG3D",""
"1667","19079241","method","Price Ii  WN, Chen  Y, Handelman  SK, Neely  H, Manor  P, Karlin  R, Nair  R, Liu  J, Baran  M, Everett  J, Tong  SN, Forouhar  F, Swaminathan  SS, Acton  T, Xiao  R, Luft  JR, Lauricella  A, Detitta  GT, Rost  B, Montelione  GT, Hunt  JF","Understanding the physical properties that control protein crystallization by analysis of large-scale experimental data.","Nature Biotechnology","2009","27","51-57","CHTSB+NESG",""
"1658","19041878","method","Davis  IW, Baker  D","RosettaLigand Docking with Full Ligand and Receptor Flexibility.","Journal of Molecular Biology","2009","385","381-92","NMHRCM",""
"1892","19037750","method","Arnold K, Kiefer F, Kopp J, Battey JN, Podvinec M, Westbrook JD, Berman HM, Bordoli L, Schwede T","The Protein Model Portal.","Journal of Structural and Functional Genomics","2009","10","1-8","PSISBKB",""
"1792","19010965","method","Berman HM, Westbrook JD, Gabanyi MJ, Tao W, Shah R, Kouranov A, Schwede T, Arnold K, Kiefer F, Bordoli L, Kopp J, Podvinec M, Adams PD, Carter LG, Minor W, Nair R, La Baer J","The protein structure initiative structural genomics knowledgebase.","Nucleic Acids Research","2009","37","D365-8","MCSG+PSISBKB",""
"1686","18996897","method","Cuff  AL, Sillitoe  I, Lewis  T, Redfern  OC, Garratt  R, Thornton  J, Orengo  CA","The CATH classification revisited--architectures reviewed and new ways to characterize structural divergence in superfamilies.","Nucleic Acids Research","2009","37","D310-4","MCSG",""
"1605","18988022","method","Abdullah  JM, Joachimiak  A, Collart  FR","\"System 48\" high-throughput cloning and protein expression analysis.","Methods in Molecular Biology","2009","498","117-27","MCSG",""
"1606","18988021","method","Eschenfeldt  WH, Lucy  S, Millard  CS, Joachimiak  A, Mark  ID","A Family of LIC Vectors for High-Throughput Cloning and Purification of Proteins.","Methods in Molecular Biology","2009","498","105-15","MCSG",""
"1752","18988020","method","Klock HE, Lesley SA","The Polymerase Incomplete Primer Extension (PIPE) method applied to high-throughput cloning and site-directed mutagenesis.","Methods in Molecular Biology","2009","498","91-103","JCSG",""
"1731","18988018","method","Blommel PG, Martin PA, Seder KD, Wrobel RL, Fox BG","Flexi vector cloning.","Methods in Molecular Biology","2009","498","55-73","CESG",""
"1611","18985440","method","Rykunov  D, Steinberger  E, Madrid-Aliste  CJ, Fiser  A","Improved scoring function for comparative modeling using the M4T method.","Journal of Structural and Functional Genomics","2009","10","95-9","NYSGXRC",""
"1609","18948282","method","Pieper  U, Eswar  N, Webb  BM, Eramian  D, Kelly  L, Barkan  DT, Carter  H, Mankoo  P, Karchin  R, Marti-Renom  MA, Davis  FP, Sali  A","MODBASE, a database of annotated comparative protein structure models and associated resources.","Nucleic Acids Research","2009","37","D347-54","NYSGXRC",""
"1633","18816799","method","Ramelot  TA, Raman  S, Kuzin  AP, Xiao  R, Ma  LC, Acton  TB, Hunt  JF, Montelione  GT, Baker  D, Kennedy  MA","Improving NMR protein structure quality by Rosetta refinement: A molecular replacement study.","Proteins","2009","75","147-67","NESG",""
"1620","18798568","method","Kernytsky A, Rost B","Using genetic algorithms to select most predictive protein features.","Proteins","2009","75","75-88","NESG",""
"1604","18712420","method","Gillner  DM, Bienvenue  DL, Nocek  BP, Joachimiak  A, Zachary  V, Bennett  B, Holz  RC","The dapE-encoded N-succinyl-L: ,L: -diaminopimelic acid desuccinylase from Haemophilus influenzae contains two active-site histidine residues.","Journal of Biological Inorganic Chemistry","2009","14","1-10","MCSG",""
"1623","18704950","method","Wrzeszczynski KO, Rost B","Cell cycle kinases predicted from conserved biophysical properties.","Proteins","2009","74","655-68","NESG",""
"1858","","method","Kunken JM","High Performance Computing in the Real World","Windows HPC Server 2008","2009","","57-62","ATCG3D",""
"492","19529834","method","Nagel RM, Luft JR, Snell EH","AutoSherlock: a program for effective crystallization data analysis.","Journal of Applied Crystallography","2008","41","1173-1176","CHTSB+NESG",""
"1860","19234616","method","Cherezov V, Liu J, Griffith M, Hanson MA, Stevens RC","LCP-FRAP Assay for Pre-Screening Membrane Proteins for in Meso Crystallization.","Crystal Growth & Design","2008","8","4307-4315","ATCG3D",""
"1663","19101474","method","Artz  JD, Dunford  JE, Arrowood  MJ, Dong  A, Chruszcz  M, Kavanagh  KL, Minor  W, Russell  RG, Ebetino  FH, Oppermann  U, Hui  R","Targeting a uniquely nonspecific prenyl synthase with bisphosphonates to combat cryptosporidiosis.","Chemistry & Biology","2008","15","1296-306","MCSG",""
"1664","19020351","method","Snell  EH, Lauricella  AM, Potter  SA, Luft  JR, Gulde  SM, Collins  RJ, Franks  G, Malkowski  MG, Cumbaa  C, Jurisica  I, DeTitta  GT","Establishing a training set through the visual analysis of crystallization trials. Part II: crystal examples.","Acta Crystallographica Section D: Biological Crystallography","2008","64","1131-7","CHTSB+NESG+SGPP",""
"1665","19020350","method","Snell  EH, Luft  JR, Potter  SA, Lauricella  AM, Gulde  SM, Malkowski  MG, Koszelak-Rosenblum  M, Said  MI, Smith  JL, Veatch  CK, Collins  RJ, Franks  G, Thayer  M, Cumbaa  C, Jurisica  I, Detitta  GT","Establishing a training set through the visual analysis of crystallization trials. Part I: approximately 150,000 images.","Acta Crystallographica Section D: Biological Crystallography","2008","64","1123-30","CHTSB",""
"1666","19018100","method","Snell  EH, Nagel  RM, Wojtaszcyk  A, O'Neill  H, Wolfley  JL, Luft  JR","The application and use of chemical space mapping to interpret crystallization screening results.","Acta Crystallographica Section D: Biological Crystallography","2008","64","1240-9","CHTSB",""
"1750","19018097","method","Soltis SM, Cohen AE, Deacon A, Eriksson T, González A, McPhillips S, Chui H, Dunten P, Hollenbeck M, Mathews I, Miller M, Moorhead P, Phizackerley RP, Smith C, Song J, van dem Bedem H, Ellis P, Kuhn P, McPhillips T, Sauter N, Sharp K, Tsyba I, Wolf G","New paradigm for macromolecular crystallography experiments at SSRL: automated crystal screening and remote data collection.","Acta Crystallographica Section D: Biological Crystallography","2008","64","1210-21","JCSG",""
"1751","19018095","method","Liu R, Freund Y, Spraggon G","Image-based crystal detection: a machine-learning approach.","Acta Crystallographica Section D: Biological Crystallography","2008","64","1187-95","JCSG",""
"1678","19004787","method","Llewellyn  R, Eisenberg  DS","Annotating proteins with generalized functional linkages.","Proceedings of the National Academy of Sciences of the United States of America","2008","105","17700-5","ISFI",""
"1613","19000818","method","Jaroszewski  L, Slabinski  L, Wooley  J, Deacon  AM, Lesley  SA, Wilson  IA, Godzik  A","Genome pool strategy for structural coverage of protein families.","Structure","2008","16","1659-67","JCSG+JCMM",""
"1607","18954462","method","Binkowski  TA, Joachimiak  A","Protein Functional Surfaces: Global Shape Matching and Local Spatial Alignments of Ligand Binding Sites.","BMC Structural Biology","2008","8","45","MCSG",""
"1677","18951645","method","Medrano-Soto  A, Pal  D, Eisenberg  D","Inferring molecular function: contributions from functional linkages.","Trends in Genetics","2008","24","587-90","ISFI",""
"1873","18941213","method","Ofran Y, Schlessinger A, Rost B","Automated identification of complementarity determining regions (CDRs) reveals peculiar characteristics of CDRs and B cell epitopes.","Journal of Immunology","2008","181","6230-5","NESG",""
"1614","18927591","other","Agüero  F, Al-Lazikani  B, Aslett  M, Berriman  M, Buckner  FS, Campbell  RK, Carmona  S, Carruthers  IM, Chan  AW, Chen  F, Crowther  GJ, Doyle  MA, Hertz-Fowler  C, Hopkins  AL, McAllister  G, Nwaka  S, Overington  JP, Pain  A, Paolini  GV, Pieper  U, Ralph  SA, Riechers  A, Roos  DS, Sali  A, Shanmugam  D, Suzuki  T, Van Voorhis  WC, Verlinde  CL","Genomic-scale prioritization of drug targets: the TDR Targets database.","Nature reviews. Drug discovery","2008","7","900-7","NYSGXRC",""
"1753","18841481","method","Hiller S, Wider G, Wüthrich K","APSY-NMR with proteins: practical aspects and backbone assignment.","Journal of Biomolecular NMR","2008","42","179-95","JCSG",""
"1610","18832340","method","Eramian  D, Eswar  N, Shen  MY, Sali  A","How well can the accuracy of comparative protein structure models be predicted?","Protein Science","2008","17","1881-93","NYSGXRC",""
"1874","18829707","method","Soong TT, Wrzeszczynski KO, Rost B","Physical protein-protein interactions predicted from microarrays.","Bioinformatics","2008","24","2608-14","NESG",""
"1754","18827972","method","Billeter M, Wagner G, Wüthrich K","Solution NMR structure determination of proteins revisited.","Journal of Biomolecular NMR","2008","42","155-8","JCSG",""
"1561","18825126","method","Kim  Y, Quartey  P, Li  H, Volkart  L, Hatzos  C, Chang  C, Nocek  B, Cuff  M, Osipiuk  J, Tan  K, Fan  Y, Bigelow  L, Maltseva  N, Wu  R, Borovilos  M, Duggan  E, Zhou  M, Binkowski  TA, Zhang  RG, Joachimiak  A","Large-scale evaluation of protein reductive methylation for improving protein crystallization.","Nature Methods","2008","5","853-4","MCSG",""
"1944","18816066","method","Ando N, Barstow B, Baase WA, Fields A, Matthews BW, Gruner SM","Structural and thermodynamic characterization of T4 lysozyme mutants and the contribution of internal cavities to pressure denaturation.","Biochemistry","2008","47","11097-109","CHTSB",""
"1618","18787110","method","Vila  JA, Aramini  JM, Rossi  P, Kuzin  A, Su  M, Seetharaman  J, Xiao  R, Tong  L, Montelione  GT, Scheraga  HA","Quantum chemical 13C(alpha) chemical shift calculations for protein NMR structure determination, refinement, and validation.","Proceedings of the National Academy of Sciences of the United States of America","2008","105","14389-94","NESG",""
"1945","18768811","method","Barstow B, Ando N, Kim CU, Gruner SM","Alteration of citrine structure by hydrostatic pressure explains the accompanying spectral shift.","Proceedings of the National Academy of Sciences of the United States of America","2008","105","13362-6","CHTSB",""
"1580","18765284","method","Goren  MA, Fox  BG","Wheat germ cell-free translation, purification, and assembly of a functional human stearoyl-CoA desaturase complex.","Protein Expression and Purification","2008","62","171-8","CESG",""
"1698","18759993","other","Veeramalai  M, Ye  Y, Godzik  A","TOPS++FATCAT: fast flexible structural alignment using constraints derived from TOPS+ Strings Model.","BMC Bioinformatics","2008","9","358","JCMM",""
"1578","18723625","method","Chang  Y, Wesenberg  GE, Bingman  CA, Fox  BG","In vivo inactivation of the mycobacterial integral membrane stearoyl coenzyme A desaturase DesA3 by a C-terminus-specific degradation process.","Journal of Bacteriology","2008","190","6686-96","CESG",""
"1592","18723523","method","Bannen  RM, Suresh  V, Phillips  GN, Wright  SJ, Mitchell  JC","Optimal design of thermally stable proteins.","Bioinformatics","2008","24","2339-43","CESG",""
"1687","18712300","method","Marsden  RL, Orengo  CA","The classification of protein domains.","Methods in Molecular Biology","2008","453","123-46","MCSG",""
"1755","18709333","method","Fiorito F, Herrmann T, Damberger FF, Wüthrich K","Automated amino acid side-chain NMR assignment of proteins using (13)C- and (15)N-resolved 3D [ (1)H, (1)H]-NOESY.","Journal of Biomolecular NMR","2008","42","23-33","JCSG",""
"1711","18687947","other","Karpowich  NK, Wang  DN","Symmetric transporters for asymmetric transport","Science","2008","321","781-2","NYCOMPS",""
"1563","18682743","method","Dequéant  ML, Ahnert  S, Edelsbrunner  H, Fink  TM, Glynn  EF, Hattem  G, Kudlicki  A, Mileyko  Y, Morton  J, Mushegian  AR, Pachter  L, Rowicka  M, Shiu  A, Sturmfels  B, Pourquié  O","Comparison of pattern detection methods in microarray time series of the segmentation clock.","PLoS ONE","2008","3","e2856","MCSG",""
"1699","18680598","other","Zhang  Q, Zmasek  CM, Dishaw  LJ, Mueller  MG, Ye  Y, Litman  GW, Godzik  A","Novel genes dramatically alter regulatory network topology in amphioxus.","Genome Biology","2008","9","R123","JCMM",""
"1746","18670595","method","Chiang RA, Sali A, Babbitt PC","Evolutionarily conserved substrate substructures for automated annotation of enzyme superfamilies.","PLoS Computational Biology","2008","4","e1000142","NYSGXRC",""
"1749","18647834","other","Forrest LR, Zhang YW, Jacobs MT, Gesmonde J, Xie L, Honig BH, Rudnick G","Mechanism for alternating access in neurotransmitter transporters.","Accounts of Chemical Research","2008","105","10338-43","NYCOMPS",""
"1577","18621726","method","Bae  E, Bannen  RM, Phillips  GN","Bioinformatic method for protein thermal stabilization by structural entropy optimization.","Proceedings of the National Academy of Sciences of the United States of America","2008","105","9594-7","CESG",""
"1690","18615018","method","He  X, Zhou  J, Bartlam  M, Zhang  R, Ma  J, Lou  Z, Li  X, Li  J, Joachimiak  A, Zeng  Z, Ge  R, Rao  Z, Liu  Y","Crystal structure of the polymerase PA(C)-PB1(N) complex from an avian influenza H5N1 virus.","Nature","2008","454","1123-6","MCSG",""
"1691","18614582","method","Ng  AK, Zhang  H, Tan  K, Li  Z, Liu  JH, Chan  PK, Li  SM, Chan  WY, Au  SW, Joachimiak  A, Walz  T, Wang  JH, Shaw  PC","Structure of the influenza virus A H5N1 nucleoprotein: implications for RNA binding, oligomerization, and vaccine design.","FASEB Journal","2008","22","3638-47","MCSG",""
"1562","18614239","method","Zheng  H, Chruszcz  M, Lasota  P, Lebioda  L, Minor  W","Data mining of metal ion environments present in protein structures.","Journal of Inorganic Biochemistry","2008","102","1765-76","MCSG",""
"1621","18592195","method","Nair  R, Rost  B","Protein subcellular localization prediction using artificial intelligence technology.","Methods in Molecular Biology","2008","484","435-63","NESG",""
"1612","18560755","method","Shi  W, Chance  MR","Metallomics and metalloproteomics.","Cellular and Molecular Life Science","2008","65","3040-8","NYSGXRC",""
"1688","18554899","method","Redfern  OC, Dessailly  B, Orengo  CA","Exploring the structure and function paradigm.","Current Opinion in Structural Biology","2008","18","394-402","MCSG",""
"1673","18545698","method","Cabantous  S, Rogers  Y, Terwilliger  TC, Waldo  GS","New molecular reporters for rapid protein folding assays.","PLoS ONE","2008","3","e2387","ISFI",""
"380","18542890","method","Sauder  MJ, Rutter  ME, Bain  K, Rooney  I, Gheyi  T, Atwell  S, Thompson  DA, Emtage  S, Burley  SK","High throughput protein production and crystallization at NYSGXRC.","Methods in Molecular Biology","2008","426","561-75","NYSGXRC",""
"1646","18542876","method","Ng  JD, Stevens  RC, Kuhn  P","Protein crystallization in restricted geometry: advancing old ideas for modern times in structural proteomics.","Methods in Molecular Biology","2008","426","363-76","ATCG3D",""
"10","18542861","method","Eswar  N, Eramian  D, Webb  B, Shen  MY, Sali  A","Protein structure modeling with MODELLER.","Methods in Molecular Biology","2008","426","145-59","NYSGXRC",""
"1581","18542857","method","Haquin  S, Oeuillet  E, Pajon  A, Harris  M, Jones  AT, van Tilbeurgh  H, Markley  JL, Zolnai  Z, Poupon  A","Data management in structural genomics: an overview.","Methods in Molecular Biology","2008","426","49-79","CESG",""
"1689","18542854","method","Marsden  RL, Orengo  CA","Target selection for structural genomics: an overview.","Methods in Molecular Biology","2008","426","3-25","MCSG",""
"1756","18512031","method","Volk J, Herrmann T, Wüthrich K","Automated sequence-specific protein NMR assignment using the memetic algorithm MATCH.","Journal of Biomolecular NMR","2008","41","127-38","JCSG",""
"1747","18505562","method","Espadaler J, Eswar N, Querol E, Avilés FX, Sali A, Marti-Renom MA, Oliva B","Prediction of enzyme function by combining sequence similarity and protein interactions.","BMC Bioinformatics","2008","9","249","NYSGXRC",""
"1619","18487680","method","Huang  YJ, Hang  D, Lu  LJ, Tong  L, Gerstein  MB, Montelione  GT","Targeting the human cancer pathway protein interaction network by structural genomics.","Molecular & Cellular Proteomics","2008","7","2048-60","NESG",""
"1537","18479092","method","Zhang  Q, Horst  R, Geralt  M, Ma  X, Hong  WX, Finn  MG, Stevens  RC, Wüthrich  K","Microscale NMR screening of new detergents for membrane protein structural biology.","Journal of the American Chemical Society","2008","130","7357-63","JCSG",""
"1863","18458824","method","Lemak A, Steren CA, Arrowsmith CH, Llinás M","Sequence specific resonance assignment via Multicanonical Monte Carlo search using an ABACUS approach.","Journal of Biomolecular NMR","2008","41","29-41","NESG",""
"1532","18441029","method","Chruszcz  M, Wlodawer  A, Minor  W","Determination of protein structures--a series of fortunate events.","Biophysical Journal","2008","95","1-9","MCSG",""
"1720","18436958","method","Wang X, Bansal S, Jiang M, Prestegard JH","RDC-assisted modeling of symmetric protein homo-oligomers.","Protein Science","2008","17","899-907","NESG",""
"1769","18398006","method","Liu M, Zhang Y, Inouye M, Woychik NA","Bacterial addiction module toxin Doc inhibits translation elongation through its association with the 30S ribosomal subunit.","Proceedings of the National Academy of Sciences of the United States of America","2008","105","5885-90","NESG",""
"1500","18359856","method","Chruszcz M, Potrzebowski W, Zimmerman MD, Grabowski M, Zheng H, Lasota P, Minor W","Analysis of solvent content and oligomeric states in protein crystals: does symmetry matter?","Protein Science","2008","17","623-32","MCSG",""
"1627","18326625","method","Shen  Y, Lange  O, Delaglio  F, Rossi  P, Aramini  JM, Liu  G, Eletsky  A, Wu  Y, Singarapu  KK, Lemak  A, Ignatchenko  A, Arrowsmith  CH, Szyperski  T, Montelione  GT, Baker  D, Bax  A","Consistent blind protein structure generation from NMR chemical shift data.","Proceedings of the National Academy of Sciences of the United States of America","2008","105","4685-90","NESG",""
"1668","18323624","method","Kempkes  R, Stofko  E, Lam  K, Snell  EH","Glycerol concentrations required for the successful vitrification of cocktail conditions in a high-throughput crystallization screen.","Acta Crystallographica Section D: Biological Crystallography","2008","64","287-301","CHTSB",""
"1650","18286178","method","Kolatkar  A, Kennedy  K, Halabuk  D, Kunken  J, Marrinucci  D, Bethel  K, Guzman  R, Huckaby  T, Kuhn  P","C-ME: a 3D community-based, real-time collaboration tool for scientific research and training.","PLoS ONE","2008","3","e1621","ATCG3D",""
"1523","18275820","method","Topf M, Lasker K, Webb B, Wolfson H, Chiu W, Sali A","Protein structure fitting and refinement guided by cryo-EM density.","Structure","2008","16(2)","295-307","NYSGXRC",""
"1702","18273680","method","Zhang  Q, Atreya  HS, Kamen  DE, Girvin  ME, Szyperski  T","GFT projection NMR based resonance assignment of membrane proteins: application to subunit C of E. coli F(1)F (0) ATP synthase in LPPG micelles.","Journal of Biomolecular NMR","2008","40","157-63","NYCOMPS",""
"1499","18235434","method","Structural Genomics Consortium; Architecture et Fonction des Macromolécules Biologiques; Berkeley Structural Genomics Center; China Structural Genomics Consortium; Integrated Center for Structure and Function Innovation; Israel Structural Proteomics Center; Joint Center for Structural Genomics; Midwest Center for Structural Genomics; New York Structural GenomiX Research Center for Structural Genomics; Northeast Structural Genomics Consortium; Oxford Protein Production Facility; Protein Sample Production Facility, Max Delbrück Center for Molecular Medicine; RIKEN Structural Genomics/Proteomics Initiative; SPINE2-Complexes","Protein production and purification.","Nature Methods","2008","5","135-46","ISFI+JCSG+MCSG+NESG+NYSGXRC",""
"1616","18235432","other","Fox  BG, Goulding  C, Malkowski  MG, Stewart  L, Deacon  A","Structural genomics: from genes to structures with valuable materials and many questions in between.","Nature Methods","2008","5","129-32","ATCG3D+CESG+CHTSB+ISFI+JCSG",""
"1595","18226920","method","Sobrado  P, Goren  MA, James  D, Amundson  CK, Fox  BG","A Protein Structure Initiative approach to expression, purification, and in situ delivery of human cytochrome b5 to membrane vesicles.","Protein Expression and Purification","2008","58","229-41","CESG",""
"1647","18219119","method","Ng  JD, Clark  PJ, Stevens  RC, Kuhn  P","In situ X-ray analysis of protein crystals in low-birefringent and X-ray transmissive plastic microchannels.","Acta Crystallographica Section D: Biological Crystallography","2008","64","189-97","ATCG3D",""
"1527","18210369","method","Manjasetty BA, Turnbull AP, Panjikar S, Büssow K, Chance MR","Automated technologies and novel techniques to accelerate protein crystallography for structural genomics.","Proteomics","2008","8(4)","612-25","NYSGXRC",""
"1498","18184575","method","Burley SK, Joachimiak A, Montelione GT, Wilson IA","Contributions to the NIH-NIGMS Protein Structure Initiative from the PSI Production Centers","Structure","2008","16(1)","5-11","JCSG+MCSG+NESG+NYSGXRC",""
"1506","18094477","method","Schwarzenbacher R, Godzik A, Jaroszewski L","The JCSG MR pipeline: optimized alignments, multiple models and parallel searches.","Acta Crystallographica Section D: Biological Crystallography","2008","64(Pt 1)","133-40","JCSG",""
"1535","18034855","method","Wlodawer  A, Minor  W, Dauter  Z, Jaskolski  M","Protein crystallography for non-crystallographers, or how to get the best (but not more) from published macromolecular structures.","FEBS Journal","2008","275","1-21","MCSG",""
"1503","18004753","method","Klock HE, Koesema EJ, Knuth MW, Lesley SA","Combining the polymerase incomplete primer extension method for cloning and mutagenesis with microscreening to accelerate structural genomics efforts.","Proteins","2008","71(2)","982-94","JCSG",""
"2045","17964805","method","Bailey LJ, Elsen NL, Pierce BS, Fox BG","Soluble expression and purification of the oxidoreductase component of toluene 4-monooxygenase.","Protein Expression and Purification","2008","57","9-16","CESG",""
"512","17640066","method","Bhattacharya A, Wunderlich Z, Monleon D, Tejero R, Montelione GT","Assessing model accuracy using the homology modeling automatically software.","Proteins","2008","70(1)","105-18","NESG",""
"1679","","method","Larson SB, Day JS, Nguyen C, Cudney R, McPherson A","Progress in the development of an alternative approach to macromolecular crystallization","Crystal Growth & Design","2008","8","3038-3052","CHTSB",""
"1797","","method","Kim CU, Chen Y-F, Tate MW, Gruner SM","Pressure Induced High-Density Amorphous Ice in Protein Crystals","Journal of Applied Crystallography","2008","41","1-7","CHTSB",""
"1551","","method","Abola E, Carlton DD, Kuhn P, Stevens RC","Five years of Increasing Structural Biology Throughput – A Retrospective Analysis.","Books and Proceedings","2007","","1-26","JCSG",""
"1374","","method","Rajashankar KR, Chance MR, Burley SK, Jiang J, Almo SC, Bresnick A, Huang R, He G, Chen H, Sullivan M, Toomey J, Radhakannan T, Franklin W, Sali A, Pieper U, McMahan L","Structural Genomics at the National Synchrotron Light Source","Books and Proceedings","2007","28","105-28","NYSGXRC",""
"383","","method","Berger JM","Soft-polymer microfluidic applications to protein crystallization","Books and Proceedings","2007","","","TB",""
"1757","19005562","method","Miller MD, Deacon AM","An X-ray microsource based system for crystal screening and beamline development during synchrotron shutdown periods.","Nuclear Instruments and Methods in Physics Research, Sec. A","2007","582","233-235","JCSG",""
"1524","18429317","method","Eswar N, Webb B, Marti-Renom MA, Madhusudhan MS, Eramian D, Shen MY, Pieper U, Sali A","Comparative protein structure modeling using MODELLER.","Current Protocols in Protein Science","2007","Chapter 2(11)","Unit 2.9","NYSGXRC",""
"1599","18302007","method","Bannen  RM, Bingman  CA, Phillips  GN","Effect of low-complexity regions on protein structure determination.","Journal of Structural and Functional Genomics","2007","8","217-26","CESG",""
"1591","18236171","method","Pan  X, Wesenberg  GE, Markley  JL, Fox  BG, Phillips  GN, Bingman  CA","A graphical approach to tracking and reporting target status in structural genomics.","Journal of Structural and Functional Genomics","2007","8","209-16","CESG",""
"1712","18073103","other","Hendrickson  WA","Impact of structures from the protein structure initiative.","Structure","2007","15","1528-9","NYCOMPS",""
"1685","18070938","method","Alexander-Brett  JM, Fremont  DH","Dual GPCR and GAG mimicry by the M3 chemokine decoy receptor.","Journal of Experimental Medicine","2007","204","3157-72","MCSG",""
"1669","18038192","method","McPherson  A, Nguyen  C, Larson  SB, Day  JS, Cudney  B","Development of an alternative approach to protein crystallization.","Journal of Structural and Functional Genomics","2007","8","193-8","CHTSB",""
"1550","18037900","method","Lee  D, Redfern  O, Orengo  C","Predicting protein function from sequence and structure.","Nature Reviews. Molecular Cell Biology","2007","8","995-1005","MCSG",""
"1529","17997955","method","Sali A, Lima CD, Kostic M","Structural genomics.","Structure","2007","15(11)","1341","NYSGXRC",""
"597","17988403","method","Maslennikov I, Johnson C, Riek R, Choe S, Kwiatkowski W","Use of NMR spectroscopy and analytical untracentrifugation to characterize protein detergent complexes during membrane protein purification","BMC Structural Biology","2007","7","74","CSMP",""
"1572","17985212","method","Frederick  RO, Bergeman  L, Blommel  PG, Bailey  LJ, McCoy  JG, Song  J, Meske  L, Bingman  CA, Riters  M, Dillon  NA, Kunert  J, Yoon  JW, Lim  A, Cassidy  M, Bunge  J, Aceti  DJ, Primm  JG, Markley  JL, Phillips  GN, Fox  BG","Small-scale, semi-automated purification of eukaryotic proteins for structure determination.","Journal of Structural and Functional Genomics","2007","8","153-66","CESG",""
"1495","17982461","method","Dong A, Xu X, Edwards AM, Chang C, Chruszcz M, Cuff M, Cymborowski M, Di Leo R, Egorova O, Evdokimova E, Filippova E, Gu J, Guthrie J, Ignatchenko A, Joachimiak A, Klostermann N, Kim Y, Korniyenko Y, Minor W, Que Q, Savchenko A, Skarina T, Tan K, Yakunin A, Yee A, Yim V, Zhang R, Zheng H,  Akutsu M, Arrowsmith C, Avvakumov GV, Bochkarev A, Dahlgren LG, Dhe-Paganon S, Dimov S, Dombrovski L, Finerty P, Flodin S, Flores A, Gräslund S, Hammerström M, Herman MD, Hong BS, Hui R, Johansson I, Liu Y, Nilsson M, Nedyalkova L, Nordlund P, Nyman T, Min J, Ouyang H, Park HW, Qi C, Rabeh W, Shen L, Shen Y, Sukumard D, Tempel W, Tong Y, Tresagues L, Vedadi M, Walker JR, Weigelt J, Welin M, Wu H, Xiao T","In situ proteolysis for protein crystallization and structure determination.","Nature Methods","2007","4(12)","1019-21","MCSG",""
"1657","17978193","method","André  I, Bradley  P, Wang  C, Baker  D","Prediction of the structure of symmetrical protein assemblies.","Proceedings of the National Academy of Sciences of the United States of America","2007","104","17656-61","NMHRCM",""
"357","17965947","other","Rupp B","Automated robotic harvesting of protein crystals-addressing a critical bottleneck or instrumentation overkill?","European BioPharmaceutical Review","2007","8","145-52","TB",""
"1528","17965183","method","Davis FP, Barkan DT, Eswar N, McKerrow JH, Sali A","Host pathogen protein interactions predicted by comparative modeling.","Protein Science","2007","16(12)","2585-96","NYSGXRC",""
"1651","17962519","other","Rosenbaum  DM, Cherezov  V, Hanson  MA, Rasmussen  SG, Thian  FS, Kobilka  TS, Choi  HJ, Yao  XJ, Weis  WI, Stevens  RC, Kobilka  BK","GPCR engineering yields high-resolution structural insights into beta2-adrenergic receptor function.","Science","2007","318","1266-73","ATCG3D",""
"1507","17962404","method","Slabinski L, Jaroszewski L, Rodrigues AP, Rychlewski L, Wilson IA, Lesley SA, Godzik A","The challenge of protein structure determination--lessons from structural genomics.","Protein Science","2007","16(11)","2472-82","JCSG",""
"1700","17958905","other","Zmasek  CM, Zhang  Q, Ye  Y, Godzik  A","Surprising complexity of the ancestral apoptosis network.","Genome Biology","2007","8","R226","JCMM",""
"1701","17951070","method","Vink M, Derr K, Love J, Stokes DL, Ubarretxena-Belandia I","A high-throughput strategy to screen 2D crystallization trials of membrane proteins.","Journal of Structural Biology","2007","160","295-304","NYCOMPS",""
"1655","17934447","method","Qian  B, Raman  S, Das  R, Bradley  P, McCoy  AJ, Read  RJ, Baker  D","High-resolution structure prediction and the crystallographic phase problem.","Nature","2007","450","259-64","NMHRCM",""
"1573","17933855","method","DiMaio  F, Kondrashov  DA, Bitto  E, Soni  A, Bingman  CA, Phillips  GN, Shavlik  JW","Creating protein models from electron-density maps using particle-filtering methods.","Bioinformatics","2007","23","2851-8","CESG",""
"1505","17924686","method","Lipfert J, Columbus L, Chu VB, Lesley SA, Doniach S","Size and shape of detergent micelles determined by small-angle X-ray scattering.","Journal of Physical Chemistry B","2007","111(43)","12427-38","JCSG",""
"1508","17921170","method","Slabinski L, Jaroszewski L, Rychlewski L, Wilson IA, Lesley SA, Godzik A","XtalPred: a web server for prediction of protein crystallizability.","Bioinformatics","2007","23(24)","3403-5","JCSG",""
"1661","17905872","method","Barth  P, Schonbrun  J, Baker  D","Toward high-resolution prediction and design of transmembrane helical protein structures.","Proceedings of the National Academy of Sciences of the United States of America","2007","104","15682-7","NMHRCM",""
"1525","17905832","method","Melo F, Sali A","Fold assessment for comparative protein structure modeling.","Protein Science","2007","16(11)","2412-26","NYSGXRC",""
"1574","17899393","method","Wang  L, Eghbalnia  HR, Markley  JL","Nearest-neighbor effects on backbone alpha and beta carbon chemical shifts in proteins.","Journal of Biomolecular NMR","2007","39","247-57","CESG",""
"654","17882334","method","Mancia F, Hendrickson WA","Expression of recombinant G-protein coupled receptors for structural biology.","Molecular bioSystems","2007","3","723-34","NYCOMPS",""
"1539","17850753","method","Zhang  Y, Stec  B, Godzik  A","Between order and disorder in protein structures: analysis of \"dual personality\" fragments in proteins.","Structure","2007","15","1141-7","JCSG",""
"742","17850747","method","Kim  SM, Bowers  PM, Pal  D, Strong  M, Terwilliger  TC, Kaufmann  M, Eisenberg  D","Functional linkages can reveal protein complexes for structure determination.","Structure","2007","15","1079-89","ISFI",""
"1575","17850744","method","Levin  EJ, Kondrashov  DA, Wesenberg  GE, Phillips  GN","Ensemble refinement of protein crystal structures: validation and application.","Structure","2007","15","1040-52","CESG",""
"1472","17850739","other","Taraska JW, Zagotta WN"," Cyclic Nucleotide-Regulated Ion Channels: Spotlight on Symmetry","Structure","2007","15","1023-1024","CSMP",""
"1526","17766392","method","Feyfant E, Sali A, Fiser A","Modeling mutations in protein structures.","Protein Science","2007","16(9)","2030-41","NYSGXRC",""
"505","17709338","method","Schlessinger  A, Punta  M, Rost  B","Natively unstructured regions in proteins identified from contact predictions.","Bioinformatics","2007","23","2376-84","NESG+NYCOMPS",""
"541","17703213","method","Guan L,  Kaback HR","Site-directed alkylation of cysteine to test solvent accessibility of membrane proteins","Nature Protocols","2007","2","2012-17","CSMP",""
"506","17687356","method","Liu J, Montelione GT, Rost B","Novel leverage of structural genomics.","Nature Biotechnology","2007","25(8)","849-51","NESG",""
"1622","17658943","method","Schlessinger  A, Liu  J, Rost  B","Natively unstructured loops differ from other loops.","PLoS Computational Biology","2007","3","e140","NESG",""
"292","17656758","method","Chou HT, Evans JE, Stahlberg H","Electron crystallography of membrane proteins.","Methods in Molecular Biology","2007","369(1)","331-43","CSMP",""
"1675","17656576","method","Goldschmidt  L, Cooper  DR, Derewenda  ZS, Eisenberg  D","Toward rational protein crystallization: A Web server for the design of crystallizable protein variants.","Protein Science","2007","16","1569-76","ISFI",""
"603","17641648","method","Suzuki M, Mao L, Inouye M","Single protein production (SPP) system in Escherichia coli.","Nature Protocols","2007","2(7)","1802-10","NYCOMPS",""
"393","17623851","method","Andrec  M, Snyder  DA, Zhou  Z, Young  J, Montelione  GT, Levy  RM","A large data set comparison of protein structures determined by crystallography and NMR: statistical test for structural differences and the effect of crystal packing.","Proteins","2007","69","449-65","NESG",""
"539","17623436","method","Li SS, Giometti CS","A combinatorial approach to studying protein complex composition by employing size-exclusion chromatography and proteome analysis.","Journal of Separation Science","2007","30(10)","1549-55","MCSG",""
"585","17611711","method","Godzik A, Jambon M, Friedberg I","Computational protein function prediction: are we making progress?","Cellular and Molecular Life Science","2007","64(19-20)","2505-11","JCSG",""
"1587","17610130","method","Cornilescu  G, Bahrami  A, Tonelli  M, Markley  JL, Eghbalnia  HR","HIFI-C: a robust and fast method for determining NMR couplings from adaptive 3D to 2D projections.","Journal of Biomolecular NMR","2007","38","341-51","CESG",""
"538","17587562","method","Grabowski M, Joachimiak A, Otwinowski Z, Minor W","Structural genomics: keeping up with expanding knowledge of the protein universe.","Current Opinion in Structural Biology","2007","17(3)","347-53","MCSG",""
"529","17586769","method","Miller DJ, Shuvalova L, Evdokimova E, Savchenko A, Yakunin AF, Anderson WF","Structural and biochemical characterization of a novel Mn2+-dependent phosphodiesterase encoded by the yfcE gene.","Protein Science","2007","16(7)","1338-48","MCSG",""
"1692","17584613","other","Zhou  HB, Nettles  KW, Bruning  JB, Kim  Y, Joachimiak  A, Sharma  S, Carlson  KE, Stossi  F, Katzenellenbogen  BS, Greene  GL, Katzenellenbogen  JA","Elemental isomerism: a boron-nitrogen surrogate for a carbon-carbon double bond increases the chemical diversity of estrogen receptor ligands.","Chemistry & Biology","2007","14","659-69","MCSG",""
"391","17583513","method","Lu  LJ, Sboner  A, Huang  YJ, Lu  HX, Gianoulis  TA, Yip  KY, Kim  PM, Montelione  GT, Gerstein  MB","Comparing classical pathways and modern networks: towards the development of an edge ontology.","Trends in Biochemical Sciences","2007","32","320-31","NESG",""
"503","17574435","method","Assur Z, Schieren I, Hendrickson WA, Mancia F","Two-color selection for amplified co-production of proteins in mammalian cells.","Protein Expression and Purification","2007","55(2)","319-24","NYCOMPS",""
"523","17570147","method","Marti-Renom MA, Rossi A, Al-Shahrour F, Davis FP, Pieper U, Dopazo J, Sali A","The AnnoLite and AnnoLyze programs for comparative annotation of protein structures.","BMC Bioinformatics","2007","8 Suppl 4(2)","S4","NYSGXRC",""
"1538","17570143","method","Rodrigues  AP, Grant  BJ, Godzik  A, Friedberg  I","The 2006 automated function prediction meeting.","BMC Bioinformatics","2007","8 Suppl 4","S1-4","JCSG",""
"600","17569508","method","Chloupková M, Pickert A, Lee JY, Souza S, Trinh YT, Connelly SM, Dumont ME, Dean M, Urbatsch IL","Expression of 25 human ABC transporters in the yeast Pichia pastoris and characterization of the purified ABCC3 ATPase activity.","Biochemistry","2007","46(27)","7992-8003","CHTSB",""
"561","17543538","method","Blommel PG, Fox BG","A combined approach to improving large-scale production of tobacco etch virus protease.","Protein Expression and Purification","2007","55(1)","53-68","CESG",""
"588","17521566","method","Minor DL","The neurobiologist's guide to structural biology: a primer on why macromolecular structure matters and how to evaluate structural data","Neuron","2007","54(4)","511-33","CSMP",""
"598","17506520","method","Blommel PG, Becker KJ, Duvnjak P, Fox BG","Enhanced bacterial protein expression during auto-induction obtained by alteration of lac repressor dosage and medium composition.","Biotechnology Progress","2007","23(3)","585-98","CESG",""
"513","17496898","method","Aramini JM, Rossi P, Anklin C, Xiao R, Montelione GT","Microgram-scale protein structure determination by NMR.","Nature Methods","2007","4(6)","491-3","NESG",""
"389","17493288","other","Smith AK, Cheung KH, Yip KY, Schultz M, Gerstein MK","LinkHub: a Semantic Web system that facilitates cross-database queries and information retrieval in proteomics.","BMC Bioinformatics","2007","8 Suppl 3(3)","S5","NESG",""
"522","17478513","method","Marti-Renom MA, Pieper U, Madhusudhan MS, Rossi A, Eswar N, Davis FP, Al-Shahrour F, Dopazo J, Sali A","DBAli tools: mining the protein structure space.","Nucleic Acids Research","2007","35(Web Server issue)","W393-7","NYSGXRC",""
"1588","17470797","method","Davis  CA, Bingman  CA, Landick  R, Record  MT, Saecker  RM","Real-time footprinting of DNA in the first kinetically significant intermediate in open complex formation by Escherichia coli RNA polymerase.","Proceedings of the National Academy of Sciences of the United States of America","2007","104","7833-8","CESG",""
"1693","17468738","other","Nettles  KW, Bruning  JB, Gil  G, O'Neill  EE, Nowak  J, Guo  Y, Hughs  A, Kim  Y, DeSombre  ER, Dilis  R, Hanson  RN, Joachimiak  A, Greene  GL","Structural plasticity in the oestrogen receptor ligand-binding domain.","EMBO Reports","2007","8","563-8","MCSG",""
"293","17456747","method","Savage DF, Anderson CL, Robles-Colmenares Y, Newby ZE, Stroud RM","Cell-free complements in vivo expression of the E. coli membrane proteome.","Protein Science","2007","16(5)","966-76","CSMP",""
"592","17452791","method","Kim CU, Hao Q, Gruner SM","High-pressure cryocooling for capillary sample cryoprotection and diffraction phasing at long wavelengths.","Acta Crystallographica Section D: Biological Crystallography","2007","63(Pt 5)","653-9","CHTSB",""
"1674","17452789","method","Cooper  DR, Boczek  T, Grelewska  K, Pinkowska  M, Sikorska  M, Zawadzki  M, Derewenda  Z","Protein crystallization by surface entropy reduction: optimization of the SER strategy.","Acta Crystallographica Section D: Biological Crystallography","2007","63","636-45","ISFI",""
"590","17426150","method","Malkowski MG, Quartley E, Friedman AE, Babulski J, Kon Y, Wolfley J, Said M, Luft JR, Phizicky EM, DeTitta GT, Grayhack EJ","Blocking S-adenosylmethionine synthesis in yeast allows selenomethionine incorporation and multiwavelength anomalous dispersion phasing.","Proceedings of the National Academy of Sciences of the United States of America","2007","104(16)","6678-83","CHTSB",""
"516","17369271","method","Przybylski D, Rost B","Consensus sequences improve PSI-BLAST through mimicking profile-profile alignments.","Nucleic Acids Research","2007","35(7)","2238-46","NESG",""
"499","17367718","method","Punta M, Forrest LR, Bigelow H, Kernytsky A, Liu J, Rost B","Membrane protein prediction methods.","Methods","2007","41","460-74","NYCOMPS",""
"534","17363272","method","Stols L, Zhou M, Eschenfeldt WH, Millard CS, Abdullah J, Collart FR, Kim Y, Donnelly MI","New vectors for co-expression of proteins: structure of Bacillus subtilis ScoAB obtained by high-throughput protocols","Protein Expression and Purification","2007","53(2)","396-403","MCSG",""
"594","17355171","method","Yooseph S, Sutton G, Rusch DB, Halpern AL, Williamson SJ, Remington K, Eisen JA, Heidelberg KB, Manning G, Li W, Jaroszewski L, Cieplak P, Miller CS, Li H, Mashiyama ST, Joachimiak MP, van Belle C, Chandonia JM, Soergel DA, Zhai Y, Natarajan K, Lee S, Raphael BJ, Bafna V, Friedman R, Brenner SE, Godzik A, Eisenberg D, Dixon JE, Taylor SS, Strausberg RL, Frazier M, Venter JC","The Sorcerer II Global Ocean Sampling expedition: expanding the universe of protein families.","PLoS Biology","2007","5(3)","e16","JCSG",""
"1494","17349043","method","Marsden RL, Lewis TA, Orengo CA","Towards a comprehensive structural coverage of completed genomes: a structural genomics viewpoint.","BMC Bioinformatics","2007","8(2)","86","MCSG",""
"596","17327668","method","Larson SB, Day JS, Cudney R, McPherson A","A novel strategy for the crystallization of proteins: X-ray diffraction validation.","Acta Crystallographica Section D: Biological Crystallography","2007","63(Pt 3)","310-8","CHTSB",""
"599","17327388","method","Luft JR, Wolfley JR, Said MI, Nagel RM, Lauricella AM, Smith JL, Thayer MH, Veatch CK, Snell EH, Malkowski MG, Detitta GT","Efficient optimization of crystallization conditions by manipulation of drop volume ratio and temperature.","Protein Science","2007","16(4)","715-22","CHTSB",""
"593","17317920","method","Song J, Mathew D, Jacob SA, Corbett L, Moorhead P, Soltis SM","Diffraction-based automated crystal centering.","Journal of Synchrotron Radiation","2007","14(Pt 2)","191-5","CHTSB",""
"535","17316683","method","Watson JD, Sanderson S, Ezersky A, Savchenko A, Edwards A, Orengo C, Joachimiak A, Laskowski RA, Thornton JM","Towards fully automated structure-based function prediction in structural genomics: a case study","Journal of Molecular Biology","2007","367(5)","1511-22","MCSG",""
"546","17307896","method","Sabina RL, Paul AL, Ferl RJ, Laber B, Lindell SD","Adenine nucleotide pool perturbation is a metabolic trigger for AMP deaminase inhibitor-based herbicide toxicity.","Plant Physiology","2007","143(4)","1752-60","CESG",""
"591","17292912","method","Collins MD, Quillin ML, Hummer G, Matthews BW, Gruner SM","Structural rigidity of a large cavity-containing protein revealed by high-pressure crystallography.","Journal of Molecular Biology","2007","367(3)","752-63","CHTSB",""
"498","17284035","method","Poget SF, Cahill SM, Girvin ME","Isotropic bicelles stabilize the functional form of a small multidrug-resistance pump for NMR structural studies.","Journal of the American Chemical Society","2007","129","2432-3","NYCOMPS",""
"602","17279722","method","Chen DL, Li L, Reyes S, Adamson DN, Ismagilov RF","Using three-phase flow of immiscible liquids to prevent coalescence of droplets in microfluidic channels: criteria to identify the third liquid and validation with protein crystallization.","Langmuir","2007","23(4)","2255-60","ATCG3D",""
"474","17275330","method","Brooun  A, Foster  SA, Chrencik  JE, Chien  EY, Kolatkar  AR, Streiff  M, Ramage  P, Widmer  H, Weckbecker  G, Kuhn  P","Remedial strategies in structural proteomics: expression, purification, and crystallization of the Vav1/Rac1 complex.","Protein Expression and Purification","2007","53","51-62","ATCG3D",""
"502","17253688","method","Kamen DE, Cahill SM, Girvin ME","Multiple alignment of membrane proteins for measuring residual dipolar couplings using lanthanide ions bound to a small metal chelator.","Journal of the American Chemical Society","2007","129(7)","1846-7","NYCOMPS",""
"587","17251354","method","Stroud RM","Transmembrane transporters: an open and closed case.","Proceedings of the National Academy of Sciences of the United States of America","2007","104(5)","1445-6","CSMP",""
"595","17237095","method","Friedberg I, Harder T, Kolodny R, Sitbon E, Li Z, Godzik A","Using an alignment of fragment strings for comparing protein structures.","Bioinformatics","2007","23(2)","e219-24","JCSG",""
"1694","17228884","other","Zhou  HB, Sheng  S, Compton  DR, Kim  Y, Joachimiak  A, Sharma  S, Carlson  KE, Katzenellenbogen  BS, Nettles  KW, Greene  GL, Katzenellenbogen  JA","Structure-guided optimization of estrogen receptor binding affinity and antagonist potency of pyrazolopyrimidines with basic side chains.","Journal of Medicinal Chemistry","2007","50","399-403","MCSG",""
"500","17227032","method","Atreya HS, Garcia E, Shen Y, Szyperski T","J-GFT NMR for precise measurement of mutually correlated nuclear spin-spin couplings.","Journal of the American Chemical Society","2007","129(3)","680-92","NESG+NYCOMPS",""
"586","17211072","method","Holton JM","XANES measurements of the rate of radiation damage to selenomethionine side chains.","Journal of Synchrotron Radiation","2007","14(Pt 1)","51-72","CSMP",""
"511","17186527","method","Bhattacharya A, Tejero R, Montelione GT","Evaluating protein structures determined by structural genomics consortia.","Proteins","2007","66(4)","778-95","NESG",""
"392","17154423","other","Mirkovic N, Li Z, Parnassa A, Murray D","Strategies for high-throughput comparative modeling: applications to leverage analysis in structural genomics and protein family organization.","Proteins","2007","66(4)","766-77","NESG",""
"520","17153936","method","Manjasetty BA, Shi W, Zhan C, Fiser A, Chance MR","A high-throughput approach to protein structure analysis.","Genetic Engineering","2007","28","105-28","NYSGXRC",""
"589","17078969","method","White MA, Clark KM, Grayhack EJ, Dumont ME","Characteristics affecting expression and solubilization of yeast membrane proteins.","Journal of Molecular Biology","2007","365(3)","621-36","CHTSB",""
"571","17055742","method","Gipson B, Zeng X, Zhang ZY, Stahlberg H","2dx--user-friendly image processing for 2D crystals.","Journal of Structural Biology","2007","157(1)","64-72","CSMP",""
"655","","method","Eswar N, Marti-Renom MA","Comparative Protein Structure Modeling Using MODELLER","Books and Proceedings","2007","chapter 2","Unit 2.9","NYSGXRC",""
"601","","method","Rupp B","A guide to automation and data handling in protein crystallization","Books and Proceedings","2007","","","TB",""
"524","","method","Renault L, Stahlberg H","Three-dimensional transmission electron microscopy of Macromolecular Assemblies","Scanning","2007","29(1)","37","CSMP",""
"544","","method","Stewart L","Gene Synthesis for Protein Production","Books and Proceedings","2007","","","ATCG3D",""
"1552","","method","Canaves JM","Tools for Computational Protein Annotation and Functional Assignment","Books and Proceedings","2006","","","JCSG",""
"716","22530499","method","Chamberlain PP, Klock HE, McMullan D, DiDonato M, Kreusch A, Lesley SA, Spraggon G","Advances in high-throughput methodologies for crystallizing proteins","Biotechnology & Genetic Engineering Reviews","2006","23","1-19","JCSG",""
"669","17117882","method","Mercier KA, Baran M, Ramanathan V, Revesz P, Xiao R, Montelione GT, Powers R","FAST-NMR: functional annotation screening technology using NMR spectroscopy.","Journal of the American Chemical Society","2006","128(47)","15292-9","NESG",""
"704","17103018","method","Renault L, Chou HT, Chiu PL, Hill RM, Zeng X, Gipson B, Zhang ZY, Cheng A, Unger V, Stahlberg H","Milestones in electron crystallography.","Journal of Computer-aided Molecular Design","2006","20(7-8)","519-27","CSMP",""
"660","17101277","method","McPherson A, Cudney B","Searching for silver bullets: an alternative strategy for crystallizing macromolecules.","Journal of Structural Biology","2006","156(3)","387-406","CHTSB",""
"677","17096593","method","Korkin D, Davis FP, Alber F, Luong T, Shen MY, Lucic V, Kennedy MB, Sali A","Structural modeling of protein interactions by analogy: application to PSD-95.","PLoS Computational Biology","2006","2(11)","e153","NYSGXRC",""
"678","17075131","method","Shen MY, Sali A","Statistical potential for assessment and prediction of protein structures.","Protein Science","2006","15(11)","2507-24","NYSGXRC",""
"645","17052359","method","Zhi D, Krishna SS, Cao H, Pevzner P, Godzik A","Representing and comparing protein structures as paths in three-dimensional space.","BMC Bioinformatics","2006","7(2)","460","JCSG",""
"1695","17051221","other","Shen  Y, Joachimiak  A, Rosner  MR, Tang  WJ","Structures of human insulin-degrading enzyme reveal a new substrate recognition mechanism.","Nature","2006","443","870-4","MCSG",""
"762","17020876","method","Suzuki M, Roy R, Zheng H, Woychik N, Inouye M","Bacterial bioreactors for high yield production of recombinant protein.","Journal of Biological Chemistry","2006","281(49)","37559-65","NESG+NYCOMPS",""
"748","17012394","method","Joyce AR, Reed JL, White A, Edwards R, Osterman A, Baba T, Mori H, Lesely SA, Palsson BØ, Agarwalla S","Experimental and computational assessment of conditionally essential genes in Escherichia coli.","Journal of Bacteriology","2006","188(23)","8259-71","JCSG",""
"676","16982067","method","Colubri A, Jha AK, Shen MY, Sali A, Berry RS, Sosnick TR, Freed KF","Minimalist representations and the importance of nearest neighbor effects in protein folding simulations.","Journal of Molecular Biology","2006","363(4)","835-57","NYSGXRC",""
"698","16963645","method","Rossi A, Marti-Renom MA, Sali A","Localization of binding sites in protein structures by optimization of a composite scoring function.","Protein Science","2006","15(10)","2366-80","NYSGXRC",""
"1671","16962548","method","Ericsson  UB, Hallberg  BM, Detitta  GT, Dekker  N, Nordlund  P","Thermofluor-based high-throughput stability optimization of proteins for structural studies.","Analytical Biochemistry","2006","357","289-98","CHTSB",""
"746","16955948","other","Berman  HM, Burley  SK, Chiu  W, Sali  A, Adzhubei  A, Bourne  PE, Bryant  SH, Dunbrack  RL, Fidelis  K, Frank  J, Godzik  A, Henrick  K, Joachimiak  A, Heymann  B, Jones  D, Markley  JL, Moult  J, Montelione  GT, Orengo  C, Rossmann  MG, Rost  B, Saibil  H, Schwede  T, Standley  DM, Westbrook  JD","Outcome of a workshop on archiving structural models of biological macromolecules.","Structure","2006","14","1211-7","NESGC+NYSGXRC",""
"398","16942869","other","Yee A, Gutmanas A, Arrowsmith CH","Solution NMR in structural genomics.","Current Opinion in Structural Biology","2006","16(5)","611-7","NESG",""
"754","16930128","method","Vinarov DA, Loushin Newman CL, Markley JL","Wheat germ cell-free platform for eukaryotic protein production.","FEBS Journal","2006","273(18)","4160-9","CESG",""
"721","16929397","method","Adamson DN, Mustafi D, Zhang JX, Zheng B, Ismagilov RF","Production of arrays of chemically distinct nanolitre plugs via repeated splitting in microfluidic devices.","Lab on a Chip","2006","6(9)","1178-86","ATCG3D",""
"670","16929105","method","Georgiev A, Vorobiev S, Edstrom W, Song T, Laine A, Hunt J, Allen P","Automated streak-seeding with micromachined silicon tools.","Acta Crystallographica Section D: Biological Crystallography","2006","62(Pt 9)","1039-45","NESG",""
"679","16928737","method","Rai BK, Madrid-Aliste CJ, Fajardo JE, Fiser A","MMM: a sequence-to-structure alignment protocol.","Bioinformatics","2006","22(21)","2691-2","NYSGXRC",""
"656","16911958","method","Phizicky EM, Grayhack EJ","Proteome-scale analysis of biochemical activity.","Critical Reviews in Biochemistry and Molecular Biology","2006","41(5)","315-27","CHTSB",""
"690","16893193","method","Wang Z, Stalcup LD, Harvey BJ, Weber J, Chloupkova M, Dumont ME, Dean M, Urbatsch IL","Purification and ATP hydrolysis of the putative cholesterol transporters ABCG5 and ABCG8.","Biochemistry","2006","45(32)","9929-39","CHTSB",""
"741","16873525","method","DiMaio F, Shavlik J, Phillips GN","A probabilistic approach to protein backbone tracing in electron density maps.","Bioinformatics","2006","22(14)","e81-9","CESG",""
"724","16855301","method","Minor W, Cymborowski M, Otwinowski Z, Chruszcz M","HKL-3000: the integration of data reduction and structure solution--from diffraction images to an initial model in minutes","Acta Crystallographica Section D: Biological Crystallography","2006","62(Pt 8)","859-66","MCSG",""
"680","16844985","method","Fernandez-Fuentes N, Zhai J, Fiser A","ArchPRED: a template based loop structure prediction server.","Nucleic Acids Research","2006","34(Web Server issue)","W173-6","NYSGXRC",""
"1697","16840324","other","Arnold  PL, Fremont  DH","Structural determinants of chemokine binding by an Ectromelia virus-encoded decoy receptor.","Journal of Virology","2006","80","7439-49","MCSG",""
"663","16837525","method","Kolodny R, Honig B","VISTAL--a new 2D visualization tool of protein 3D structural alignments.","Bioinformatics","2006","22(17)","2166-7","NESG",""
"396","16828276","other","Falzon L, Suzuki M, Inouye M","Finding one of a kind: advances in single-protein production.","Current Opinion in Biotechnology","2006","17(4)","347-52","NESG",""
"488","16826541","other","Szyperski T, Atreya HS","Principles and applications of GFT projection NMR spectroscopy.","Magnetic resonance in chemistry : MRC","2006","44 Spec No","S51-60","NESG",""
"397","16826541","other","Szyperski T, Atreya HS","Principles and applications of GFT projection NMR spectroscopy.","Magnetic Resonance in Chemistry","2006","44 Spec No(4)","S51-60","NESG",""
"681","16820050","method","Fernandez-Fuentes N, Fiser A","Saturating representation of loop conformational fragments in structure databanks.","BMC Structural Biology","2006","6(7)","15","NYSGXRC",""
"752","16799859","method","Wang L, Eghbalnia HR, Markley JL","Probabilistic approach to determining unbiased random-coil carbon-13 chemical shift values from the protein chemical shift database.","Journal of Biomolecular NMR","2006","35(3)","155-65","CESG",""
"657","16790924","method","Kim CU, Hao Q, Gruner SM","Solution of protein crystallographic structures by high-pressure cryocooling and noble-gas phasing.","Acta Crystallographica Section D: Biological Crystallography","2006","62(Pt 7)","687-94","CHTSB",""
"642","16758442","method","Hegeman AD, Rodriguez M, Han BW, Uno Y, Phillips GN, Hrabak EM, Cushman JC, Harper JF, Harmon AC, Sussman MR","A phyloproteomic characterization of in vitro autophosphorylation in calcium-dependent protein kinases.","Proteomics","2006","6(12)","3649-64","CESG",""
"682","16751606","method","Eramian D, Shen MY, Devos D, Melo F, Sali A, Marti-Renom MA","A composite score for predicting errors in protein structure models.","Protein Science","2006","15(7)","1653-66","NYSGXRC",""
"683","16738133","method","Davis FP, Braberg H, Shen MY, Pieper U, Sali A, Madhusudhan MS","Protein complex compositions predicted by structural similarity.","Nucleic Acids Research","2006","34(10)","2943-52","NYSGXRC",""
"749","16731984","method","Friedberg I, Jambon M, Godzik A","New avenues in protein function prediction.","Protein Science","2006","15(6)","1527-9","JCSG",""
"703","16704729","method","Roosild TP, Vega M, Castronovo S, Choe S","Characterization of the family of Mistic homologues.","BMC Structural Biology","2006","6(2)","10","CSMP",""
"702","16689628","method","Guan L, Kaback HR","Lessons from lactose permease.","Annual Review of Biophysics and Biomolecular Structure","2006","35(10)","67-91","CSMP",""
"664","16683024","method","Liu J, Gough J, Rost B","Distinguishing protein-coding from non-coding RNAs through support vector machines.","PLoS Genetics","2006","2(4)","e29","NESG",""
"395","16678402","other","Kolodny R, Petrey D, Honig B","Protein structure comparison: implications for the nature of 'fold space', and structure and function prediction","Current Opinion in Structural Biology","2006","16(3)","393-8","NESG",""
"1652","16677848","method","Chen  DL, Ismagilov  RF","Microfluidic cartridges preloaded with nanoliter plugs of reagents: an alternative to 96-well plates for screening.","Current Opinion in Chemical Biology","2006","10","226-31","ATCG3D",""
"665","16645816","method","Kornhaber GJ, Snyder D, Moseley HN, Montelione GT","Identification of zinc-ligated cysteine residues based on 13Calpha and 13Cbeta chemical shift data.","Journal of Biomolecular NMR","2006","34(4)","259-69","NESG",""
"739","16644793","method","Kirillova O, Minor W","Map2mod--a server for evaluation of crystallographic models and their agreement with electron density maps.","Bioinformatics","2006","22(13)","1660-1","MCSG",""
"643","16644028","method","Mehlin C, Boni E, Buckner FS, Engel L, Feist T, Gelb MH, Haji L, Kim D, Liu C, Mueller N, Myler PJ, Reddy JT, Sampson JN, Subramanian E, Van Voorhis WC, Worthey E, Zucker F, Hol WG","Heterologous expression of proteins from Plasmodium falciparum: results from 1000 genes.","Molecular and Biochemical Parasitology","2006","148(2)","144-60","SGPP",""
"684","16617149","method","Fernandez-Fuentes N, Oliva B, Fiser A","A supersecondary structure library and search algorithm for modeling loops in protein structures.","Nucleic Acids Research","2006","34(7)","2085-97","NYSGXRC",""
"1696","16598263","other","Lunin  VV, Dobrovetsky  E, Khutoreskaya  G, Zhang  R, Joachimiak  A, Doyle  DA, Bochkarev  A, Maguire  ME, Edwards  AM, Koth  CM","Crystal structure of the CorA Mg2+ transporter.","Nature","2006","440","833-7","MCSG",""
"751","16597824","method","Columbus L, Lipfert J, Klock H, Millett I, Doniach S, Lesley SA","Expression, purification, and characterization of Thermotoga maritima membrane proteins for structure determination.","Protein Science","2006","15(5)","961-75","JCSG",""
"722","16566839","method","Chandonia JM, Kim SH","Structural proteomics of minimal organisms: conservation of protein fold usage and evolutionary implications.","BMC Structural Biology","2006","6(32)","7","BSGC",""
"723","16524831","method","Marsden RL, Ranea JA, Sillero A, Redfern O, Yeats C, Maibaum M, Lee D, Addou S, Reeves GA, Dallman TJ, Orengo CA","Exploiting protein structure data to explore the evolution of protein function and biological complexity.","Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences","2006","361(1467)","425-40","MCSG",""
"750","16505959","method","Etezady-Esfarjani T, Herrmann T, Horst R, Wüthrich K","Automated protein NMR structure determination in crude cell-extract.","Journal of Biomolecular NMR","2006","34(1)","3-11","JCSG",""
"738","16497515","method","Donnelly MI, Zhou M, Millard CS, Clancy S, Stols L, Eschenfeldt WH, Collart FR, Joachimiak A","An expression vector tailored for large-scale, high-throughput purification of recombinant proteins.","Protein Expression and Purification","2006","47(2)","446-54","MCSG",""
"737","16481312","method","Marsden RL, Lee D, Maibaum M, Yeats C, Orengo CA","Comprehensive genome analysis of 203 genomes provides structural genomics with new insights into protein family space.","Nucleic Acids Research","2006","34(3)","1066-80","MCSG",""
"695","16459078","method","Chiu W, Baker ML, Almo SC","Structural biology of cellular machines.","Trends in Cell Biology","2006","16(3)","144-50","NYSGXRC",""
"653","16456704","method","Poget SF, Krueger-Koplin ST, Krueger-Koplin RD, Cahill SM, Chandra Shekar S, Girvin ME","NMR assignment of the dimeric S. aureus small multidrug-resistance pump in LPPG micelles.","Journal of Biomolecular NMR","2006","36 Suppl 1(13)","10","NYCOMPS",""
"394","16455753","other","Yu H, Paccanaro A, Trifonov V, Gerstein M","Predicting interactions in protein networks by completing defective cliques.","Bioinformatics","2006","22(7)","823-9","NESG",""
"717","16446422","method","Guan L, Smirnova IN, Verner G, Nagamori S, Nagamoni S, Kaback HR","Manipulating phospholipids for crystallization of a membrane transport protein.","Proceedings of the National Academy of Sciences of the United States of America","2006","103(6)","1723-6","CSMP",""
"675","16437570","method","Rai BK, Fiser A","Multiple mapping method: a novel approach to the sequence-to-structure alignment problem in comparative protein structure modeling.","Proteins","2006","63(3)","644-61","NYSGXRC",""
"638","16424331","method","Chandonia JM, Brenner SE","The impact of structural genomics: expectations and outcomes.","Science","2006","311(5759)","347-51","BSGC",""
"696","16423846","method","Madhusudhan MS, Marti-Renom MA, Sanchez R, Sali A","Variable gap penalty for protein sequence-structure alignment.","Protein Engineering, Design and Selection","2006","19(3)","129-33","NYSGXRC",""
"647","16413576","method","Fellouse FA, Barthelemy PA, Kelley RF, Sidhu SS","Tyrosine plays a dominant functional role in the paratope of a synthetic antibody derived from a four amino acid code.","Journal of Molecular Biology","2006","357(1)","100-14","ISFI",""
"636","16397008","method","Smith A, Chandonia JM, Brenner SE","ANDY: a general, fault-tolerant tool for database searching on computer clusters.","Bioinformatics","2006","22(5)","618-20","BSGC",""
"668","16395675","method","Baran MC, Moseley HN, Aramini JM, Bayro MJ, Monleon D, Locke JY, Montelione GT","SPINS: a laboratory information management system for organizing and archiving intermediate and final results from NMR protein structure determinations.","Proteins","2006","62(4)","843-51","NESG",""
"753","16381914","method","Johnson DH, Tsao J, Luo M, Carson M","SGCEdb: a flexible database and web interface integrating experimental results and analysis for structural genomics focusing on Caenorhabditis elegans.","Nucleic Acids Research","2006","34(Database issue)","D471-4","SECSG",""
"697","16381869","method","Pieper U, Eswar N, Davis FP, Braberg H, Madhusudhan MS, Rossi A, Marti-Renom M, Karchin R, Webb BM, Eramian D, Shen MY, Kelly L, Melo F, Sali A","MODBASE: a database of annotated comparative protein structure models and associated resources.","Nucleic Acids Research","2006","34(Database issue)","D291-5","NYSGXRC",""
"736","16381865","method","Yeats C, Maibaum M, Marsden R, Dibley M, Lee D, Addou S, Orengo CA","Gene3D: modelling protein structure, function and evolution.","Nucleic Acids Research","2006","34(Database issue)","D281-4","MCSG",""
"639","16377204","method","Blommel PG, Martin PA, Wrobel RL, Steffen E, Fox BG","High efficiency single step production of expression plasmids from cDNA clones using the Flexi Vector cloning system.","Protein Expression and Purification","2006","47(2)","562-70","CESG",""
"667","16374783","method","Huang YJ, Tejero R, Powers R, Montelione GT","A topology-constrained distance network algorithm for protein structure determination from NOESY data.","Proteins","2006","62(3)","587-603","NESG",""
"648","16369541","method","Pédelacq JD, Cabantous S, Tran T, Terwilliger TC, Waldo GS","Engineering and characterization of a superfolder green fluorescent protein.","Nature Biotechnology","2006","24(1)","79-88","ISFI",""
"649","16369101","method","Derewenda ZS, Vekilov PG","Entropy and surface engineering in protein crystallization.","Acta Crystallographica Section D: Biological Crystallography","2006","62(Pt 1)","116-24","ISFI",""
"646","16325424","method","Huang J, Koide A, Nettle KW, Greene GL, Koide S","Conformation-specific affinity purification of proteins using engineered binding proteins: application to the estrogen receptor.","Protein Expression and Purification","2006","47(2)","348-54","ISFI",""
"637","16276528","method","Chandonia JM, Kim SH, Brenner SE","Target selection and deselection at the Berkeley Structural Genomics Center.","Proteins","2006","62(2)","356-70","BSGC",""
"755","16188276","method","Wang Y, Li W, Zhang T, Ding C, Lu Z, Long N, Rose JP, Wang BC, Lin D","Reconstruction of ancient genome and gene order from complete microbial genome sequences.","Journal of Theoretical Biology","2006","239(4)","494-8","SECSG",""
"659","","method","Eswar N, Sali A","Comparative Modeling of Drug Target Proteins","Books and Proceedings","2006","","","NYSGXRC",""
"715","","method","Shi W, Chance MR","Structural Genomics: high-throughput methods in structure determination of protein domains","Books and Proceedings","2006","","","NYSGXRC",""
"699","","method","Vinarov DA, Newman CL, Tyler EM, Markley JL, Shahan MN","Wheat germ cell-free expression system for protein production","Books and Proceedings","2006","chapter 5","99-128","CESG",""
"652","","method","Zhang Z, Sauter NK, van den Bedem H, Snell G, Deacon AM","Automated diffraction image analysis and spot searching for high-throughput crystal screening","Journal of Applied Crystallography","2006","39","112-9","JCSG",""
"651","","method","Ruble JR, Wang BC, Rose JP","A simple method for motorized alignment of Osmic confocal optics","Journal of Applied Crystallography","2006","39","892-94","SECSG",""
"700","","method","Wrobel RL, Bingman CA, Jeon WB, Song J, Vinarov DA, Frederick RO, Aceti DJ, Sreenath HK, Zolnai Z, Vojtik FC, Bitto E, Fox BG, Phillips GN, Jr, Markley JL","Structural Proteomics","Books and Proceedings","2006","","99-128","CESG",""
"949","17468785","method","Yadav MK, Gerdts CJ, Sanishvili R, Smith WW, Roach LS, Ismagilov RF, Kuhn P, Stevens RC","In situ data collection and structure refinement from microcapillary protein crystallization.","Journal of Applied Crystallography","2005","38(6)","900-905","ATCG3D",""
"951","16600054","method","Hendrickson WA","Transduction of biochemical signals across cell membranes.","Quarterly Reviews of Biophysics","2005","38(4)","321-30","NYCOMPS",""
"812","16511228","method","Collins B, Stevens RC, Page R","Crystallization Optimum Solubility Screening: using crystallization results to identify the optimal buffer for protein crystal formation.","Acta Crystallographica Section F: Structural Biology and Crystallization Communications","2005","61(Pt 12)","1035-8","JCSG",""
"399","16364908","other","Petrey D, Honig B","Protein structure prediction: inroads to biology.","Molecular Cell","2005","20(6)","811-9","NESG",""
"846","16335938","method","Kataeva I, Chang J, Xu H, Luan CH, Zhou J, Uversky VN, Lin D, Horanyi P, Liu ZJ, Ljungdahl LG, Rose J, Luo M, Wang BC","Improving solubility of Shewanella oneidensis MR-1 and Clostridium thermocellum JW-20 proteins expressed into Esherichia coli.","Journal of Proteome Research","2005","4(6)","1942-51","SECSG",""
"900","16322579","method","Binkowski TA, Joachimiak A, Liang J","Protein surface analysis for function annotation in high-throughput structural genomics pipeline.","Protein Science","2005","14(12)","2972-81","MCSG",""
"806","16305238","method","Yee AA, Savchenko A, Ignachenko A, Lukin J, Xu X, Skarina T, Evdokimova E, Liu CS, Semesi A, Guido V, Edwards AM, Arrowsmith CH","NMR and X-ray crystallography, complementary tools in structural proteomics of small proteins.","Journal of the American Chemical Society","2005","127(47)","16512-7","MCSG+NESG",""
"910","16305237","method","Snyder DA, Chen Y, Denissova NG, Acton T, Aramini JM, Ciano M, Karlin R, Liu J, Manor P, Rajan PA, Rossi P, Swapna GV, Xiao R, Rost B, Hunt J, Montelione GT","Comparisons of NMR spectral quality and success in crystallization demonstrate that NMR and X-ray crystallography are complementary methods for small protein structure determination.","Journal of the American Chemical Society","2005","127(47)","16505-11","NESG",""
"811","16283429","method","Peti W, Page R, Moy K, O'Neil-Johnson M, Wilson IA, Stevens RC, Wüthrich K","Towards miniaturization of a structural genomics pipeline using micro-expression and microcoil NMR.","Journal of Structural and Functional Genomics","2005","6(4)","259-67","JCSG",""
"855","16267556","method","LaCount DJ, Vignali M, Chettier R, Phansalkar A, Bell R, Hesselberth JR, Schoenfeld LW, Ota I, Sahasrabudhe S, Kurschner C, Fields S, Hughes RE","A protein interaction network of the malaria parasite Plasmodium falciparum.","Nature","2005","438(7064)","103-7","SGPP",""
"400","16267540","method","Huang  YJ, Montelione  GT","Structural biology: proteins flex to function.","Nature","2005","438","36-7","NESG",""
"946","16231903","method","Eletsky A, Atreya HS, Liu G, Szyperski T","Probing structure and functional dynamics of (large) proteins with aromatic rings: L-GFT-TROSY (4,3)D HCCH NMR spectroscopy.","Journal of the American Chemical Society","2005","127(42)","14578-9","NESG",""
"935","16216579","method","Shi W, Zhan C, Ignatov A, Manjasetty BA, Marinkovic N, Sullivan M, Huang R, Chance MR","Metalloproteomics: high-throughput structural and functional annotation of proteins in structural genomics.","Structure","2005","13(10)","1473-86","NYSGXRC",""
"841","16211524","method","Wang BC, Adams MW, Dailey H, DeLucas L, Luo M, Rose J, Bunzel R, Dailey T, Habel J, Horanyi P, Jenney FE, Kataeva I, Lee HS, Li S, Li T, Lin D, Liu ZJ, Luan CH, Mayer M, Nagy L, Newton MG, Ng J, Poole FL, Shah A, Shah C, Sugar FJ, Xu H","Protein production and crystallization at SECSG -- an overview.","Journal of Structural and Functional Genomics","2005","6(2-3)","233-43","SECSG",""
"936","16211523","method","Bonanno JB, Almo SC, Bresnick A, Chance MR, Fiser A, Swaminathan S, Jiang J, Studier FW, Shapiro L, Lima CD, Gaasterland TM, Sali A, Bain K, Feil I, Gao X, Lorimer D, Ramos A, Sauder JM, Wasserman SR, Emtage S, D'Amico KL, Burley SK","New York-Structural GenomiX Research Consortium (NYSGXRC): a large scale center for the protein structure initiative.","Journal of Structural and Functional Genomics","2005","6(2-3)","225-32","NYSGXRC",""
"810","16211521","method","Page R, Deacon AM, Lesley SA, Stevens RC","Shotgun crystallization strategy for structural genomics II: crystallization conditions that produce high resolution structures for T. maritima proteins.","Journal of Structural and Functional Genomics","2005","6(2-3)","209-17","JCSG",""
"940","16211519","method","Cumbaa C, Jurisica I","Automatic classification and pattern discovery in high-throughput protein crystallization trials.","Journal of Structural and Functional Genomics","2005","6(2-3)","195-202","NESG",""
"859","16211516","method","Oganesyan N, Kim SH, Kim R","On-column protein refolding for crystallization.","Journal of Structural and Functional Genomics","2005","6(2-3)","177-82","BSGC",""
"854","16211515","method","Shea C, Bloedorn L, Sullivan MA","Rapid isolation of single-chain antibodies for structural genomics.","Journal of Structural and Functional Genomics","2005","6(2-3)","171-5","SGPP",""
"831","16211511","method","Jeon WB, Aceti DJ, Bingman CA, Vojtik FC, Olson AC, Ellefson JM, McCombs JE, Sreenath HK, Blommel PG, Seder KD, Burns BT, Geetha HV, Harms AC, Sabat G, Sussman MR, Fox BG, Phillips GN","High-throughput purification and quality assurance of Arabidopsis thaliana proteins for eukaryotic structural genomics.","Journal of Structural and Functional Genomics","2005","6(2-3)","143-7","CESG",""
"869","16211510","method","McMullan D, Canaves JM, Quijano K, Abdubek P, Nigoghossian E, Haugen J, Klock HE, Vincent J, Hale J, Paulsen J, Lesley SA","High-throughput protein production for X-ray crystallography and use of size exclusion chromatography to validate or refute computational biological unit predictions.","Journal of Structural and Functional Genomics","2005","6(2-3)","135-41","JCSG",""
"937","16211509","method","Gao X, Bain K, Bonanno JB, Buchanan M, Henderson D, Lorimer D, Marsh C, Reynes JA, Sauder JM, Schwinn K, Thai C, Burley SK","High-throughput limited proteolysis/mass spectrometry for protein domain elucidation.","Journal of Structural and Functional Genomics","2005","6(2-3)","129-34","NYSGXRC",""
"844","16211508","method","Liu ZJ, Shah AK, Habel JE, Ng JD, Kataeva I, Xu H, Horanyi P, Yang H, Chang J, Zhao M, Huang L, Chang S, Tempel W, Chen L, Zhou W, Lee D, Lin D, Zhang H, Newton MG, Rose J, Wang BC","Salvaging Pyrococcus furiosus protein targets at SECSG.","Journal of Structural and Functional Genomics","2005","6(2-3)","121-7","SECSG",""
"823","16211507","method","Cabantous S, Pédelacq JD, Mark BL, Naranjo C, Terwilliger TC, Waldo GS","Recent advances in GFP folding reporter and split-GFP solubility reporter technologies. Application to improving the folding and solubility of recalcitrant proteins from Mycobacterium tuberculosis.","Journal of Structural and Functional Genomics","2005","6(2-3)","113-9","ISFI",""
"901","16211505","method","Laible PD, Hata AN, Crawford AE, Hanson DK","Incorporation of selenomethionine into induced intracytoplasmic membrane proteins of Rhodobacter species.","Journal of Structural and Functional Genomics","2005","6(2-3)","95-102","MCSG",""
"867","16211504","method","Klock HE, White A, Koesema E, Lesley SA","Methods and results for semi-automated cloning using integrated robotics.","Journal of Structural and Functional Genomics","2005","6(2-3)","89-94","JCSG",""
"868","16211502","method","Lesley SA, Wilson IA","Protein production and crystallization at the Joint Center for Structural Genomics","Journal of Structural and Functional Genomics","2005","6(2-3)","71-9","JCSG",""
"858","16211501","method","Kim SH, Shin DH, Liu J, Oganesyan V, Chen S, Xu QS, Kim JS, Das D, Schulze-Gahmen U, Holbrook SR, Holbrook EL, Martinez BA, Oganesyan N, DeGiovanni A, Lou Y, Henriquez M, Huang C, Jancarik J, Pufan R, Choi IG, Chandonia JM, Hou J, Gold B, Yokota H, Brenner SE, Adams PD, Kim R","Structural genomics of minimal organisms and protein fold space.","Journal of Structural and Functional Genomics","2005","6(2-3)","63-70","BSGC",""
"872","16211491","method","Chae YK, Lee K, Markley JL","1H, 15N and 13C resonance assignments of a protein involved in the autophagy process, At4g21980.1 from Arabidopsis thaliana.","Journal of Biomolecular NMR","2005","32(4)","337","CESG",""
"825","16187362","method","Kim DE, Chivian D, Malmström L, Baker D","Automated prediction of domain boundaries in CASP6 targets using Ginzu and RosettaDOM.","Proteins","2005","61 Suppl 7(2-3)","193-200","SGPP",""
"853","16187358","method","Chivian D, Kim DE, Malmström L, Schonbrun J, Rohl CA, Baker D","Prediction of CASP6 structures using automated Robetta protocols.","Proteins","2005","61 Suppl 7(1)","157-66","SGPP",""
"864","16184596","method","Pelton JG, Shi J, Yokota H, Kim R, Wemmer DE","NMR structure of hypothetical protein MG354 from Mycoplasma genitalium.","Proteins","2005","61(3)","666-8","BSGC","1tm9"
"402","16168087","method","Douglas  SM, Montelione  GT, Gerstein  M","PubNet: a flexible system for visualizing literature derived networks.","Genome Biology","2005","6","R80","NESG",""
"950","16154351","method","Zheng B, Gerdts CJ, Ismagilov RF","Using nanoliter plugs in microfluidics to facilitate and understand protein crystallization.","Current Opinion in Structural Biology","2005","15(5)","548-55","ATCG3D",""
"945","16154092","method","Bachhawat P, Swapna GV, Montelione GT, Stock AM","Mechanism of activation for transcription factor PhoB suggested by different modes of dimerization in the inactive and active states.","Structure","2005","13(9)","1353-63","NESG",""
"828","16144400","method","Eghbalnia HR, Bahrami A, Tonelli M, Hallenga K, Markley JL","High-resolution iterative frequency identification for NMR as a general strategy for multidimensional data collection.","Journal of the American Chemical Society","2005","127(36)","12528-36","CESG",""
"829","16132822","method","Eghbalnia HR, Bahrami A, Wang L, Assadi A, Markley JL","Probabilistic Identification of Spin Systems and their Assignments including Coil-Helix Inference as Output (PISTACHIO).","Journal of Biomolecular NMR","2005","32(3)","219-33","CESG",""
"929","16131763","method","Ramagopal UA, Dauter Z, Thirumuruhan R, Fedorov E, Almo SC","Radiation-induced site-specific damage of mercury derivatives: phasing and implications.","Acta Crystallographica Section D: Biological Crystallography","2005","61(Pt 9)","1289-98","NYSGXRC",""
"882","16108088","method","Gopal K, Romo TD, Sacchettini JC, Ioerger TR","Determining relevant features to recognize electron density patterns in x-ray protein crystallography.","Journal of Bioinformatics and Computational Biology","2005","3(3)","645-76","TB",""
"939","16080153","method","Grishaev A, Steren CA, Wu B, Pineda-Lucena A, Arrowsmith C, Llinás M","ABACUS, a direct method for protein NMR structure computation via assembly of fragments.","Proteins","2005","61(1)","36-43","NESG",""
"830","16041485","method","Eghbalnia HR, Wang L, Bahrami A, Assadi A, Markley JL","Protein energetic conformational analysis from NMR chemical shifts (PECAN) and its use in determining secondary structural elements.","Journal of Biomolecular NMR","2005","32(1)","71-81","CESG",""
"839","16041479","method","Wang L, Eghbalnia HR, Bahrami A, Markley JL","Linear analysis of carbon-13 chemical shift differences and its application to the detection and correction of errors in referencing and spin system identifications.","Journal of Biomolecular NMR","2005","32(1)","13-22","CESG",""
"827","16041478","method","Doreleijers JF, Nederveen AJ, Vranken W, Lin J, Bonvin AM, Kaptein R, Markley JL, Ulrich EL","BioMagResBank databases DOCR and FRED containing converted and filtered sets of experimental NMR restraints and coordinates from over 500 protein PDB structures.","Journal of Biomolecular NMR","2005","32(1)","1-12","CESG",""
"355","16040614","other","Brown AK, Sridharan S, Kremer L, Lindenberg S, Dover LG, Sacchettini JC, Besra GS","Probing the mechanism of the Mycobacterium tuberculosis beta-ketoacyl-acyl carrier protein synthase III mtFabH: factors influencing catalysis and substrate specificity.","Journal of Biological Chemistry","2005","280(37)","32539-47","TB",""
"909","16027363","method","Liu G, Shen Y, Atreya HS, Parish D, Shao Y, Sukumaran DK, Xiao R, Yee A, Lemak A, Bhattacharya A, Acton TA, Arrowsmith CH, Montelione GT, Szyperski T","NMR data collection and analysis protocol for high-throughput protein structure determination.","Proceedings of the National Academy of Sciences of the United States of America","2005","102(30)","10487-92","NESG","1xpv"
"884","16019027","method","Laskowski RA, Watson JD, Thornton JM","Protein function prediction using local 3D templates","Journal of Molecular Biology","2005","351(3)","614-26","MCSG",""
"840","15983419","method","Xu H, Yang C, Chen L, Kataeva IA, Tempel W, Lee D, Habel JE, Nguyen D, Pflugrath JW, Ferrara JD, Arendall WB, Richardson JS, Richardson DC, Liu ZJ, Newton MG, Rose JP, Wang BC","Away from the edge II: in-house Se-SAS phasing with chromium radiation.","Acta Crystallographica Section D: Biological Crystallography","2005","61(Pt 7)","960-6","SECSG",""
"847","15983418","method","Fu ZQ, Rose J, Wang BC","SGXPro: a parallel workflow engine enabling optimization of program performance and automation of structure determination.","Acta Crystallographica Section D: Biological Crystallography","2005","61(Pt 7)","951-9","SECSG",""
"899","15980588","method","Laskowski RA, Watson JD, Thornton JM","ProFunc: a server for predicting protein function from 3D structure.","Nucleic Acids Research","2005","33(Web Server issue)","W89-93","MCSG",""
"866","15980471","method","Jaroszewski L, Rychlewski L, Li Z, Li W, Godzik A","FFAS03: a server for profile--profile sequence alignments.","Nucleic Acids Research","2005","33(Web Server issue)","W284-8","JCSG",""
"947","15969587","method","Shen Y, Atreya HS, Liu G, Szyperski T","G-matrix Fourier transform NOESY-based protocol for high-quality protein structure determination.","Journal of the American Chemical Society","2005","127(25)","9085-99","NESG",""
"826","15966852","method","Vinarov DA, Markley JL","High-throughput automated platform for nuclear magnetic resonance-based structural proteomics.","Expert Review of Proteomics","2005","2(1)","49-55","CESG",""
"849","15965733","method","Arendall WB, Tempel W, Richardson JS, Zhou W, Wang S, Davis IW, Liu ZJ, Rose JP, Carson WM, Luo M, Richardson DC, Wang BC","A test of enhancing model accuracy in high-throughput crystallography.","Journal of Structural and Functional Genomics","2005","6(1)","1-11","SECSG",""
"885","15963890","method","Watson JD, Laskowski RA, Thornton JM","Predicting protein function from sequence and structural data.","Current Opinion in Structural Biology","2005","15(3)","275-84","MCSG",""
"843","15930619","method","Liu ZJ, Tempel W, Ng JD, Lin D, Shah AK, Chen L, Horanyi PS, Habel JE, Kataeva IA, Xu H, Yang H, Chang JC, Huang L, Chang SH, Zhou W, Lee D, Praissman JL, Zhang H, Newton MG, Rose JP, Richardson JS, Richardson DC, Wang BC","The high-throughput protein-to-structure pipeline at SECSG.","Acta Crystallographica Section D: Biological Crystallography","2005","61(Pt 6)","679-84","SECSG",""
"914","15915565","method","Studier FW","Protein production by auto-induction in high density shaking cultures.","Protein Expression and Purification","2005","41(1)","207-34","NYSGXRC",""
"892","15909233","method","Dobrovetsky E, Lu ML, Andorn-Broza R, Khutoreskaya G, Bray JE, Savchenko A, Arrowsmith CH, Edwards AM, Koth CM","High-throughput production of prokaryotic membrane proteins.","Journal of Structural and Functional Genomics","2005","6(1)","33-50","MCSG",""
"401","15882409","other","Pellegrini O, Mathy N, Gogos A, Shapiro L, Condon C","The Bacillus subtilis ydcDE operon encodes an endoribonuclease of the MazF/PemK family and its inhibitor.","Molecular Microbiology","2005","56(5)","1139-48","NYSGXRC",""
"845","15858261","method","Liu ZJ, Lin D, Tempel W, Praissman JL, Rose JP, Wang BC","Parameter-space screening: a powerful tool for high-throughput crystal structure determination.","Acta Crystallographica Section D: Biological Crystallography","2005","61(Pt 5)","520-7","SECSG",""
"904","15854658","method","Todd AE, Marsden RL, Thornton JM, Orengo CA","Progress of structural genomics initiatives: an analysis of solved target structures.","Journal of Molecular Biology","2005","348(5)","1235-60","MCSG",""
"824","15854651","method","Fellouse FA, Li B, Compaan DM, Peden AA, Hymowitz SG, Sidhu SS","Molecular recognition by a binary code.","Journal of Molecular Biology","2005","348(5)","1153-62","ISFI",""
"944","15837428","method","Suzuki M, Zhang J, Liu M, Woychik NA, Inouye M","Single protein production in living cells facilitated by an mRNA interferase.","Molecular Cell","2005","18(2)","253-61","NESG",""
"938","15827081","method","Karchin R, Diekhans M, Kelly L, Thomas DJ, Pieper U, Eswar N, Haussler D, Sali A","LS-SNP: large-scale annotation of coding non-synonymous SNPs based on multiple information sources.","Bioinformatics","2005","21(12)","2814-20","NYSGXRC",""
"908","15822105","method","Snyder  DA, Bhattacharya  A, Huang  YJ, Montelione  GT","Assessing precision and accuracy of protein structures derived from NMR data.","Proteins","2005","59","655-61","NESG",""
"907","15822099","method","Snyder DA, Montelione GT","Clustering algorithms for identifying core atom sets and for assessing the precision of protein structure ensembles.","Proteins","2005","59(4)","673-86","NESG",""
"832","15822098","method","Nederveen AJ, Doreleijers JF, Vranken W, Miller Z, Spronk CA, Nabuurs SB, Güntert P, Livny M, Markley JL, Nilges M, Ulrich EL, Kaptein R, Bonvin AM","RECOORD: a recalculated coordinate database of 500+ proteins from the PDB using restraints from the BioMagResBank.","Proteins","2005","59(4)","662-72","CESG",""
"902","15808744","method","Kuznetsova E, Proudfoot M, Sanders SA, Reinking J, Savchenko A, Arrowsmith CH, Edwards AM, Yakunin AF","Enzyme genomics: Application of general enzymatic screens to discover new enzymes.","FEMS Microbiology Reviews","2005","29(2)","263-79","MCSG",""
"912","15808222","method","Acton TB, Gunsalus KC, Xiao R, Ma LC, Aramini J, Baran MC, Chiang YW, Climent T, Cooper B, Denissova NG, Douglas SM, Everett JK, Ho CK, Macapagal D, Rajan PK, Shastry R, Shih LY, Swapna GV, Wilson M, Wu M, Gerstein M, Inouye M, Hunt JF, Montelione GT","Robotic cloning and protein production platform of the Northeast Structural Genomics Consortium.","Methods in Enzymology","2005","394(3)","210-43","NESG",""
"911","15808219","method","Huang YJ, Moseley HN, Baran MC, Arrowsmith C, Powers R, Tejero R, Szyperski T, Montelione GT","An integrated platform for automated analysis of protein NMR structures.","Methods in Enzymology","2005","394(3)","111-41","NESG",""
"917","15808218","method","Atreya HS, Szyperski T","Rapid NMR data collection.","Methods in Enzymology","2005","394(1)","78-108","NESG",""
"919","15796503","method","Atreya HS, Eletsky A, Szyperski T","Resonance assignment of proteins with high shift degeneracy based on 5D spectral information encoded in G2FT NMR experiments.","Journal of the American Chemical Society","2005","127(13)","4554-5","NESG",""
"873","15790427","method","Zhang Y, Chandonia JM, Ding C, Holbrook SR","Comparative mapping of sequence-based and structure-based protein domains.","BMC Bioinformatics","2005","6(4)","77","BSGC",""
"833","15789434","method","Oldfield CJ, Ulrich EL, Cheng Y, Dunker AK, Markley JL","Addressing the intrinsic disorder bottleneck in structural proteomics.","Proteins","2005","59(3)","444-53","CESG",""
"837","15789406","method","Tyler RC, Aceti DJ, Bingman CA, Cornilescu CC, Fox BG, Frederick RO, Jeon WB, Lee MS, Newman CS, Peterson FC, Phillips GN, Shahan MN, Singh S, Song J, Sreenath HK, Tyler EM, Ulrich EL, Vinarov DA, Vojtik FC, Volkman BF, Wrobel RL, Zhao Q, Markley JL","Comparison of cell-based and cell-free protocols for producing target proteins from the Arabidopsis thaliana genome for structural studies.","Proteins","2005","59(3)","633-43","CESG",""
"906","15768405","method","Lee D, Grant A, Marsden RL, Orengo C","Identification and distribution of protein families in 120 completed genomes using Gene3D.","Proteins","2005","59(3)","603-15","MCSG",""
"838","15766868","method","Tyler RC, Sreenath HK, Singh S, Aceti DJ, Bingman CA, Markley JL, Fox BG","Auto-induction medium for the production of [U-15N]- and [U-13C, U-15N]-labeled proteins for NMR screening and structure determination.","Protein Expression and Purification","2005","40(2)","268-78","CESG",""
"835","15766867","method","Sreenath HK, Bingman CA, Buchan BW, Seder KD, Burns BT, Geetha HV, Jeon WB, Vojtik FC, Aceti DJ, Frederick RO, Phillips GN, Fox BG","Protocols for production of selenomethionine-labeled proteins in 2-L polyethylene terephthalate bottles using auto-induction medium.","Protein Expression and Purification","2005","40(2)","256-67","CESG",""
"836","15755812","method","Stolc V, Samanta MP, Tongprasit W, Sethi H, Liang S, Nelson DC, Hegeman A, Nelson C, Rancour D, Bednarek S, Ulrich EL, Zhao Q, Wrobel RL, Newman CS, Fox BG, Phillips GN, Markley JL, Sussman MR, Stolc V","Identification of transcribed sequences in Arabidopsis thaliana by using high-resolution genome tiling arrays.","Proceedings of the National Academy of Sciences of the United States of America","2005","102(12)","4453-8","CESG",""
"352","15752203","other","Colangeli R, Helb D, Sridharan S, Sun J, Varma-Basil M, Hazbón MH, Harbacheuski R, Megjugorac NJ, Jacobs WR, Holzenburg A, Sacchettini JC, Alland D","The Mycobacterium tuberculosis iniA gene is essential for activity of an efflux pump that confers drug tolerance to both isoniazid and ethambutol.","Molecular Microbiology","2005","55(6)","1829-40","TB",""
"768","15720193","method","Mehlin C","Structure-based drug discovery for Plasmodium falciparum.","Combinatorial Chemistry & High Throughput Screening","2005","8(1)","5-14","SGPP",""
"851","15713668","method","Karaveg K, Siriwardena A, Tempel W, Liu ZJ, Glushka J, Wang BC, Moremen KW","Mechanism of class 1 (glycosylhydrolase family 47) {alpha}-mannosidases involved in N-glycan processing and endoplasmic reticulum quality control.","Journal of Biological Chemistry","2005","280(16)","16197-207","SECSG",""
"870","15701634","method","Savchenko A, Krogan N, Cort JR, Evdokimova E, Lew JM, Yee AA, Sánchez-Pulido L, Andrade MA, Bochkarev A, Watson JD, Kennedy MA, Greenblatt J, Hughes T, Arrowsmith CH, Rommens JM, Edwards AM","The Shwachman-Bodian-Diamond syndrome protein family is involved in RNA metabolism.","Journal of Biological Chemistry","2005","280(19)","19213-20","MCSG+NESG","1nyn"
"948","15701001","method","Huang YJ, Powers R, Montelione GT","Protein NMR recall, precision, and F-measure scores (RPF scores): structure quality assessment measures based on information retrieval statistics.","Journal of the American Chemical Society","2005","127(6)","1665-74","NESG",""
"852","15689515","method","Deng L, Vysotski ES, Markova SV, Liu ZJ, Lee J, Rose J, Wang BC","All three Ca2+-binding loops of photoproteins bind calcium ions: the crystal structures of calcium-loaded apo-aequorin and apo-obelin.","Protein Science","2005","14(3)","663-75","SECSG",""
"903","15689503","method","Maxwell KL, Wildes D, Zarrine-Afsar A, De Los Rios MA, Brown AG, Friel CT, Hedberg L, Horng JC, Bona D, Miller EJ, Vallée-Bélisle A, Main ER, Bemporad F, Qiu L, Teilum K, Vu ND, Edwards AM, Ruczinski I, Poulsen FM, Kragelund BB, Michnick SW, Chiti F, Bai Y, Hagen SJ, Serrano L, Oliveberg M, Raleigh DP, Wittung-Stafshede P, Radford SE, Jackson SE, Sosnick TR, Marqusee S, Davidson AR, Plaxco KW","Protein folding: defining a \"standard\" set of experimental conditions and a preliminary kinetic data set of two-state proteins","Protein Science","2005","14(3)","602-16","MCSG",""
"850","15688452","method","Tempel W, Liu ZJ, Horanyi PS, Deng L, Lee D, Newton MG, Rose JP, Ashida H, Li SC, Li YT, Wang BC","Three-dimensional structure of GlcNAcalpha1-4Gal releasing endo-beta-galactosidase from Clostridium perfringens.","Proteins","2005","59(1)","141-4","SECSG",""
"842","15681862","method","Shah AK, Liu ZJ, Stewart PD, Schubot FD, Rose JP, Newton MG, Wang BC","On increasing protein-crystallization throughput for X-ray diffraction studies.","Acta Crystallographica Section D: Biological Crystallography","2005","61(Pt 2)","123-9","SECSG",""
"809","15677718","method","Page R, Peti W, Wilson IA, Stevens RC, Wüthrich K","NMR screening and crystal quality of bacterially expressed prokaryotic and eukaryotic proteins in a structural genomics pipeline.","Proceedings of the National Academy of Sciences of the United States of America","2005","102(6)","1901-5","JCSG",""
"356","15668250","other","Dey S, Hu Z, Xu XL, Sacchettini JC, Grant GA","D-3-Phosphoglycerate dehydrogenase from Mycobacterium tuberculosis is a link between the Escherichia coli and mammalian enzymes.","Journal of Biological Chemistry","2005","280(15)","14884-91","TB",""
"941","15657099","method","Brown KR, Jurisica I","Online predicted human interaction database.","Bioinformatics","2005","21(9)","2076-82","NESG",""
"807","15652250","method","Pusey ML, Liu ZJ, Tempel W, Praissman J, Lin D, Wang BC, Gavira JA, Ng JD","Life in the fast lane for protein crystallization and X-ray crystallography.","Progress in Biophysics & Molecular Biology","2005","88(3)","359-86","SECSG",""
"848","15652246","method","Delucas LJ, Hamrick D, Cosenza L, Nagy L, McCombs D, Bray T, Chait A, Stoops B, Belgovskiy A, William Wilson W, Parham M, Chernov N","Protein crystallization: virtual screening and optimization.","Progress in Biophysics & Molecular Biology","2005","88(3)","285-309","SECSG",""
"861","15640351","method","Sims GE, Choi IG, Kim SH","Protein conformational space in higher order phi-Psi maps.","Proceedings of the National Academy of Sciences of the United States of America","2005","102(3)","618-21","BSGC",""
"942","15631464","method","Magliery TJ, Wilson CG, Pan W, Mishler D, Ghosh I, Hamilton AD, Regan L","Detecting protein-protein interactions with a green fluorescent protein fragment reassembly trap: scope and mechanism.","Journal of the American Chemical Society","2005","127(1)","146-57","NESG",""
"819","15608370","method","van den Bedem H, Lotan I, Latombe JC, Deacon AM","Real-space protein-model completion: an inverse-kinematics approach.","Acta Crystallographica Section D: Biological Crystallography","2005","61(Pt 1)","2-13","JCSG",""
"905","15608188","method","Pearl F, Todd A, Sillitoe I, Dibley M, Redfern O, Lewis T, Bennett C, Marsden R, Grant A, Lee D, Akpor A, Maibaum M, Harrison A, Dallman T, Reeves G, Diboun I, Addou S, Lise S, Johnston C, Sillero A, Thornton J, Orengo C","The CATH Domain Structure Database and related resources Gene3D and DHS provide comprehensive domain family information for genome analysis.","Nucleic Acids Research","2005","33(Database issue)","D247-51","MCSG",""
"1017","15593246","method","Stevens FJ, Kuemmel C, Babnigg G, Collart FR","Efficient recognition of protein fold at low sequence identity by conservative application of Psi-BLAST: application.","Journal of Molecular Recognition","2005","18(2)","150-7","MCSG",""
"820","15582561","method","Blommel PG, Fox BG","Fluorescence anisotropy assay for proteolysis of specifically labeled fusion proteins.","Analytical Biochemistry","2005","336(1)","75-86","CESG",""
"801","15580262","method","Cabantous S, Terwilliger TC, Waldo GS","Protein tagging and detection with engineered self-assembling fragments of green fluorescent protein.","Nature Biotechnology","2005","23(1)","102-7","TB+ISFI",""
"860","15562521","method","Pajon A, Ionides J, Diprose J, Fillon J, Fogh R, Ashton AW, Berman H, Boucher W, Cygler M, Deleury E, Esnouf R, Janin J, Kim R, Krimm I, Lawson CL, Oeuillet E, Poupon A, Raymond S, Stevens T, van Tilbeurgh H, Westbrook J, Wood P, Ulrich E, Vranken W, Xueli L, Laue E, Stuart DI, Henrick K","Design of a data model for developing laboratory information management and analysis systems for protein production.","Proteins","2005","58(2)","278-84","BSGC",""
"834","15539447","method","Kifer I, Sasson O, Linial M","Predicting fold novelty based on ProtoNet hierarchical classification.","Bioinformatics","2005","21(7)","1020-7","CESG",""
"857","15521074","method","Chandonia JM, Brenner SE","Implications of structural genomics target selection strategies: Pfam5000, whole genome, and random approaches.","Proteins","2005","58(1)","166-79","BSGC",""
"957","","method","Jurisica I, Wigle DA","Knowledge discovery in proteomics","Books and Proceedings","2005","","","NESG",""
"491","","other","Szyperski T","Protein NMR spectroscopy","Books and Proceedings","2005","","","NESG",""
"354","","other","Rupp B","High throughput protein crystallography - a platform for structure guided drug discovery","Trends in Drug Discovery","2005","1","24-26","TB",""
"378","","method","Snell EH, van der Woerd MJ, Miller MD, Deacon AM","Finding a cold needle in a warm haystack: infrared imaging applied to locating cryocooled crystals in loops","Journal of Applied Crystallography","2005","38","69-77","NYSGXRC+JCSG",""
"489","","other","Rupp B","High throughput protein crystallography","Books and Proceedings","2005","","","TB",""
"956","","method","Sauder JM, Rutter ME, Bain K, Rooney I, Gheyi T, Atwell S, Thompson DA, Emtage S, Burley SK","Comparative Protein Structure Modeling","Books and Proceedings","2005","","831-860","NYSGXRC",""
"493","","other","Rost B","How to use protein 1D structure predicted by PROFphd","Books and Proceedings","2005","","875-901","NESG",""
"808","","method","Carter DC, Rhodes P,  McRee DE,  Tari L, Dougan DR, Snell G, Abola E,  Stevens RC","Reduction in diffuso-convective disturbances in nanovolume protein crystallization experiments","Journal of Applied Crystallography","2005","38","87-90","JCSG",""
"953","","method","Jamrog DC, Phillips GN, Tapia R, Zhang Y ","A global optimization method for the molecular replacement problem in X-ray crystallography","Books and Proceedings","2005","103","399-426","CESG",""
"955","","method","Xia E, Jurisica I, Waterhouse J, Sloan V","Scheduling functional regression tests in IBM DB2","Books and Proceedings","2005","","292 - 304","NESG",""
"952","","method","Georgiev A, Allen PK, Song T, Laine A, Edstrom W, Hunt J","Microrobotic streak seeding for protein crystal growth","Books and Proceedings","2005","","","NESG",""
"1553","","method","Kreusch A, Lesley SA","High Throughput Cloning, Expression and Purification Technologies","Books and Proceedings","2004","","171-182","JCSG",""
"1087","20090869","method","Sauter NK, Grosse-Kunstlev RW, Adams PD","Robust indexing for automatic data collection","Journal of Applied Crystallography","2004","37","399-409","BSGC",""
"1083","15754057","method","Torizawa T, Shimizu M, Taoka M, Miyano H, Kainosho M","Efficient production of isotopically labeled proteins by cell-free synthesis: a practical protocol.","Journal of Biomolecular NMR","2004","30(3)","311-25","CESG",""
"1082","15750721","method","Thao S, Zhao Q, Kimball T, Steffen E, Blommel PG, Riters M, Newman CS, Fox BG, Wrobel RL","Results from high-throughput DNA cloning of Arabidopsis thaliana target genes using site-specific recombination.","Journal of Structural and Functional Genomics","2004","5(4)","267-76","CESG",""
"1031","15704012","method","Valafar H, Mayer KL, Bougault CM, LeBlond PD, Jenney FE, Brereton PS, Adams MW, Prestegard JH","Backbone solution structures of proteins using residual dipolar couplings: application to a novel structural genomics target.","Journal of Structural and Functional Genomics","2004","5(4)","241-54","SECSG",""
"307","15576036","method","Card GL, England BP, Suzuki Y, Fong D, Powell B, Lee B, Luu C, Tabrizizad M, Gillette S, Ibrahim PN, Artis DR, Bollag G, Milburn MV, Kim SH, Schlessinger J, Zhang KY","Structural basis for the activity of drugs that inhibit phosphodiesterases.","Structure","2004","12(12)","2233-47","BSGC",""
"1027","15557262","method","Spraggon G, Pantazatos D, Klock HE, Wilson IA, Woods VL, Lesley SA","On the use of DXMS to produce more crystallizable proteins: structures of the T. maritima proteins TM0160 and TM1171.","Protein Science","2004","13(12)","3187-99","JCSG","1vjl"
"1079","15544807","method","Canaves JM, Page R, Wilson IA, Stevens RC","Protein biophysical properties that correlate with crystallization success in Thermotoga maritima: maximum clustering strategy for structural genomics.","Journal of Molecular Biology","2004","344(4)","977-91","JCSG",""
"971","15544509","method","Kantardjieff K, Rupp B","Structural bioinformatic approaches to the discovery of new antimycobacterial drugs.","Current Pharmaceutical Design","2004","10(26)","3195-211","TB",""
"1019","15507736","method","Rowicka M, Kudlicki A, Zelinka J, Otwinowski Z","Coordinate transformations in modern crystallographic computing.","Acta Crystallographica Section A: Foundations of Crystallography","2004","60(Pt 6)","542-9","MCSG",""
"1131","15489337","method","Chance MR, Fiser A, Sali A, Pieper U, Eswar N, Xu G, Fajardo JE, Radhakannan T, Marinkovic N","High-throughput computational and experimental techniques in structural genomics.","Genome Research","2004","14(10B)","2145-54","NYSGXRC",""
"983","15489332","method","Luan CH, Qiu S, Finley JB, Carson M, Gray RJ, Huang W, Johnson D, Tsao J, Reboul J, Vaglio P, Hill DE, Vidal M, Delucas LJ, Luo M","High-throughput expression of C. elegans proteins.","Genome Research","2004","14(10B)","2102-10","SECSG",""
"1081","15478120","method","Kundu S, Sorensen DC, Phillips GN","Automatic domain decomposition of proteins by a Gaussian Network Model.","Proteins","2004","57(4)","725-33","CESG",""
"1077","15470889","method","Page R, Moy K, Sims EC, Velasquez J, McManus B, Grittini C, Clayton TL, Stevens RC","Scalable high-throughput micro-expression device for recombinant proteins.","Biotechniques","2004","37(3)","364, 366, 368 passim","JCSG",""
"1009","15388090","method","Moseley HN, Riaz N, Aramini JM, Szyperski T, Montelione GT","A generalized approach to automated NMR peak list editing: application to reduced dimensionality triple resonance spectra.","Journal of Magnetic Resonance","2004","170(2)","263-77","NESG",""
"1784","15378068","method","Xie J, Wang L, Wu N, Brock A, Spraggon G, Schultz PG","The site-specific incorporation of p-iodo-L-phenylalanine into proteins for structure determination.","Nature Biotechnology","2004","22","1297-301","JCSG",""
"1058","15345043","method","Chandonia JM, Earnest TN, Brenner SE","Structural genomics and structural biology: compare and contrast.","Genome Biology","2004","5(9)","343","BSGC",""
"1063","15333951","method","Jancarik J, Pufan R, Hong C, Kim SH, Kim R","Optimum solubility (OS) screening: an efficient method to optimize buffer conditions for homogeneity and crystallization of proteins.","Acta Crystallographica Section D: Biological Crystallography","2004","60(Pt 9)","1670-3","BSGC",""
"969","15325656","method","Rupp B, Wang J","Predictive models for protein crystallization.","Methods","2004","34(3)","390-407","TB",""
"1078","15325655","method","Page R, Stevens RC","Crystallization data mining in structural genomics: using positive and negative results to optimize protein crystallization screens.","Methods","2004","34(3)","373-89","JCSG",""
"408","15312777","method","Przybylski  D, Rost  B","Improving fold recognition without folds.","Journal of Molecular Biology","2004","341","255-69","NESG",""
"1143","15303826","method","Baran MC, Huang YJ, Moseley HN, Montelione GT","Automated analysis of protein NMR assignments and structures.","Chemical Reviews","2004","104(8)","3541-56","NESG",""
"1130","15296729","method","Mancia F, Patel SD, Rajala MW, Scherer PE, Nemes A, Schieren I, Hendrickson WA, Shapiro L","Optimization of protein production in mammalian cells with a coexpressed fluorescent marker.","Structure","2004","12(8)","1355-60","NYSGXRC",""
"1020","15294305","method","Scholle MD, Collart FR, Kay BK","In vivo biotinylated proteins as targets for phage-display selection experiments.","Protein Expression and Purification","2004","37(1)","243-52","MCSG",""
"1141","15284103","method","Przulj N, Corneil DG, Jurisica I","Modeling interactome: scale-free or geometric?","Bioinformatics","2004","20(18)","3508-15","NESG",""
"1035","15263855","method","Laible PD, Scott HN, Henry L, Hanson DK","Towards higher-throughput membrane protein production for structural genomics initiatives.","Journal of Structural and Functional Genomics","2004","5(1-2)","167-72","MCSG",""
"1097","15263854","method","Mayer MR, Dailey TA, Baucom CM, Supernak JL, Grady MC, Hawk HE, Dailey HA","Expression of human proteins at the Southeast Collaboratory for Structural Genomics.","Journal of Structural and Functional Genomics","2004","5(1-2)","159-65","SECSG",""
"970","15263853","method","Segelke BW, Schafer J, Coleman MA, Lekin TP, Toppani D, Skowronek KJ, Kantardjieff KA, Rupp B","Laboratory scale structural genomics.","Journal of Structural and Functional Genomics","2004","5(1-2)","147-57","TB",""
"978","15263852","method","DiDonato M, Deacon AM, Klock HE, McMullan D, Lesley SA","A scaleable and integrated crystallization pipeline applied to mining the Thermotoga maritima proteome.","Journal of Structural and Functional Genomics","2004","5(1-2)","133-46","JCSG",""
"1034","15263850","method","Kim Y, Dementieva I, Zhou M, Wu R, Lezondra L, Quartey P, Joachimiak G, Korolev O, Li H, Joachimiak A","Automation of protein purification for structural genomics.","Journal of Structural and Functional Genomics","2004","5(1-2)","111-8","MCSG",""
"1047","15263849","method","Moy S, Dieckman L, Schiffer M, Maltsev N, Yu GX, Collart FR","Genome-scale expression of proteins from Bacillus subtilis.","Journal of Structural and Functional Genomics","2004","5(1-2)","103-9","MCSG",""
"1016","15263848","method","Stols L, Millard CS, Dementieva I, Donnelly MI","Production of selenomethionine-labeled proteins in two-liter plastic bottles for structure determination.","Journal of Structural and Functional Genomics","2004","5(1-2)","95-102","MCSG",""
"1085","15263847","method","Zhao Q, Frederick R, Seder K, Thao S, Sreenath H, Peterson F, Volkman BF, Markley JL, Fox BG","Production in two-liter beverage bottles of proteins for NMR structure determination labeled with either 15N- or 13C-15N.","Journal of Structural and Functional Genomics","2004","5(1-2)","87-93","CESG",""
"1056","15263845","method","Busso D, Kim R, Kim SH","Using an Escherichia coli cell-free extract to screen for soluble expression of recombinant proteins.","Journal of Structural and Functional Genomics","2004","5(1-2)","69-74","BSGC",""
"1074","15263843","method","Mehlin C, Boni EE, Andreyka J, Terry RW","Cloning grills: high throughput cloning for structural genomics.","Journal of Structural and Functional Genomics","2004","5(1-2)","59-61","SGPP",""
"982","15263840","method","Nguyen H, Martinez B, Oganesyan N, Kim R","An automated small-scale protein expression and purification screening provides beneficial information for protein production.","Journal of Structural and Functional Genomics","2004","5(1-2)","23-7","BSGC",""
"1000","15263839","method","Everett JK, Acton TB, Montelione GT","Primer Prim'er: a web based server for automated primer design","Journal of Structural and Functional Genomics","2004","5(1-2)","13-21","NESG",""
"1065","15263837","method","Adams M, Joachimiak A, Kim R, Montelione GT, Norvell J","Meeting review: 2003 NIH Protein Structure Initiative Workshop in Protein Production and Crystallization for Structural and Functional Genomics.","Journal of Structural and Functional Genomics","2004","5(1-2)","1-2","MCSG+NESG",""
"976","15263836","method","Peti W, Etezady-Esfarjani T, Herrmann T, Klock HE, Lesley SA, Wüthrich K","NMR for structural proteomics of Thermotoga maritima: screening and structure determination.","Journal of Structural and Functional Genomics","2004","5(3)","205-15","JCSG",""
"1075","15246009","method","Ogata Y, Scampavia L, Carter TL, Fan E, Turecek F","Automated affinity chromatography measurements of compound mixtures using a lab-on-valve apparatus coupled to electrospray ionization mass spectrometry.","Analytical Biochemistry","2004","331(1)","161-8","SGPP",""
"404","15240828","method","Liu  J, Rost  B","Sequence-based prediction of protein domains.","Nucleic Acids Research","2004","32","3522-30","NESG",""
"1073","15240823","method","Alexandrov A, Vignali M, LaCount DJ, Quartley E, de Vries C, De Rosa D, Babulski J, Mitchell SF, Schoenfeld LW, Fields S, Hol WG, Dumont ME, Phizicky EM, Grayhack EJ","A facile method for high-throughput co-expression of protein pairs.","Molecular & Cellular Proteomics","2004","3(9)","934-8","SGPP",""
"1029","15215527","method","Ye Y, Godzik A","Database searching by flexible protein structure alignment.","Protein Science","2004","13(7)","1841-50","JCSG",""
"1145","15215452","method","Liu J, Rost B","CHOP: parsing proteins into structural domains.","Nucleic Acids Research","2004","32(Web Server issue)","W569-71","NESG",""
"1076","15215442","method","Kim DE, Chivian D, Baker D","Protein structure prediction and analysis using the Robetta server.","Nucleic Acids Research","2004","32(Web Server issue)","W526-31","SGPP",""
"975","15213384","method","Schwarzenbacher R, Godzik A, Grzechnik SK, Jaroszewski L","The importance of alignment accuracy for molecular replacement.","Acta Crystallographica Section D: Biological Crystallography","2004","60(Pt 7)","1229-36","JCSG",""
"979","15211755","method","Canaves JM, Morse A, West B","PCR primer selection tool optimized for high-throughput proteomics and structural genomics.","Biotechniques","2004","36(6)","1040-2","JCSG",""
"1044","15211505","method","O'Toole N, Grabowski M, Otwinowski Z, Minor W, Cygler M","The structural genomics experimental pipeline: insights from global target lists","Proteins","2004","56(2)","201-10","MCSG",""
"1146","15211504","method","Liu J, Hegyi H, Acton TB, Montelione GT, Rost B","Automatic target selection for structural genomics on eukaryotes.","Proteins","2004","56(2)","188-200","NESG",""
"1011","15211503","method","Wunderlich Z, Acton TB, Liu J, Kornhaber G, Everett J, Carter P, Lan N, Echols N, Gerstein M, Rost B, Montelione GT","The protein target list of the Northeast Structural Genomics Consortium.","Proteins","2004","56(2)","181-7","NESG",""
"1129","15211038","method","Jiang J, Sweet RM","Protein Data Bank depositions from synchrotron sources.","Journal of Synchrotron Radiation","2004","11(Pt 4)","319-27","NYSGXRC",""
"997","15210958","method","Atreya HS, Szyperski T","G-matrix Fourier transform NMR spectroscopy for complete protein resonance assignment.","Proceedings of the National Academy of Sciences of the United States of America","2004","101(26)","9642-7","NESG",""
"958","15210699","method","Yakunin AF, Proudfoot M, Kuznetsova E, Savchenko A, Brown G, Arrowsmith CH, Edwards AM","The HD domain of the Escherichia coli tRNA nucleotidyltransferase has 2',3'-cyclic phosphodiesterase, 2'-nucleotidase, and phosphatase activities.","Journal of Biological Chemistry","2004","279(35)","36819-27","MCSG",""
"1015","15201178","method","Bray JE, Marsden RL, Rison SC, Savchenko A, Edwards AM, Thornton JM, Orengo CA","A practical and robust sequence search strategy for structural genomics target selection.","Bioinformatics","2004","20(14)","2288-95","MCSG",""
"411","15195995","other","Rossi A, Deveraux Q, Turk B, Sali A","Comprehensive search for cysteine cathepsins in the human genome.","Biological Chemistry","2004","385(5)","363-72","NYSGXRC",""
"1142","15195104","method","Qing G, Ma LC, Khorchid A, Swapna GV, Mal TK, Takayama MM, Xia B, Phadtare S, Ke H, Acton T, Montelione GT, Ikura M, Inouye M","Cold-shock induced high-yield protein production in Escherichia coli.","Nature Biotechnology","2004","22(7)","877-82","NESG",""
"977","15193310","method","Friedberg I, Jaroszewski L, Ye Y, Godzik A","The interplay of fold recognition and experimental structure determination in structural genomics.","Current Opinion in Structural Biology","2004","14(3)","307-12","JCSG",""
"407","15189167","method","Xia  Y, Yu  H, Jansen  R, Seringhaus  M, Baxter  S, Greenbaum  D, Zhao  H, Gerstein  M","Analyzing cellular biochemistry in terms of molecular networks.","Annual Review of Biochemistry","2004","73","1051-87","NESG",""
"1010","15180928","method","King AD, Przulj N, Jurisica I","Protein complex prediction via cost-based clustering.","Bioinformatics","2004","20(17)","3013-20","NESG",""
"1060","15173120","method","Crooks GE, Hon G, Chandonia JM, Brenner SE","WebLogo: a sequence logo generator.","Genome Research","2004","14(6)","1188-90","BSGC",""
"410","15172985","other","Mirkovic N, Marti-Renom MA, Weber BL, Sali A, Monteiro AN","Structure-based assessment of missense mutations in human BRCA1: implications for breast and ovarian cancer predisposition.","Cancer Research","2004","64(11)","3790-7","NYSGXRC",""
"405","15170512","method","Wrzeszczynski  KO, Rost  B","Annotating proteins from endoplasmic reticulum and Golgi apparatus in eukaryotic proteomes.","Cellular and Molecular Life Science","2004","61","1341-53","NESG",""
"990","15155735","method","Deng L, Markova SV, Vysotski ES, Liu ZJ, Lee J, Rose J, Wang BC","Crystal structure of a Ca2+-discharged photoprotein: implications for mechanisms of the calcium trigger and bioluminescence.","Journal of Biological Chemistry","2004","279(32)","33647-52","SECSG",""
"987","15134924","method","Jin S, Kurtz DM, Liu ZJ, Rose J, Wang BC","Displacement of iron by zinc at the diiron site of Desulfovibrio vulgaris rubrerythrin: X-ray crystal structure and anomalous scattering analysis.","Journal of Inorganic Biochemistry","2004","98(5)","786-96","SECSG",""
"1893","15130928","method","Chen L, Oughtred R, Berman HM, Westbrook J","TargetDB: a target registration database for structural genomics projects.","Bioinformatics","2004","20","2860-2","PSISBKB",""
"1806","15128449","method","Bowers PM, Pellegrini M, Thompson MJ, Fierro J, Yeates TO, Eisenberg D","Prolinks: a database of protein functional linkages derived from coevolution.","Genome Biology","2004","5","R35","ISFI",""
"1018","15128436","method","Grant A, Lee D, Orengo C","Progress towards mapping the universe of protein folds.","Genome Biology","2004","5(5)","107","MCSG",""
"406","15103630","method","Liu  J, Rost  B","CHOP proteins into structural domain-like fragments.","Proteins","2004","55","678-88","NESG",""
"2074","15103611","method","Nabuurs SB, Nederveen AJ, Vranken W, Doreleijers JF, Bonvin AM, Vuister GW, Vriend G, Spronk CA","DRESS: a database of REfined solution NMR structures.","Proteins","2004","55","483-6","CESG",""
"1080","15103164","method","Jamrog DC, Zhang Y, Phillips GN","On the equivalence between a commonly used correlation coefficient and a least-squares function.","Acta Crystallographica Section A: Foundations of Crystallography","2004","60(Pt 3)","214-9","CESG",""
"986","15102839","method","Tempel W, Karaveg K, Liu ZJ, Rose J, Wang BC, Moremen KW","Structure of mouse Golgi alpha-mannosidase IA reveals the molecular basis for substrate specificity among class 1 (family 47 glycosylhydrolase) alpha1,2-mannosidases.","Journal of Biological Chemistry","2004","279(28)","29774-86","SECSG","1nxc"
"403","15102456","method","Goh  CS, Milburn  D, Gerstein  M","Conformational changes associated with protein-protein interactions.","Current Opinion in Structural Biology","2004","14","104-9","NESG",""
"980","15062077","method","Snell G, Cork C, Nordmeyer R, Cornell E, Meigs G, Yegian D, Jaklevic J, Jin J, Stevens RC, Earnest T","Automated sample mounting and alignment system for biological crystallography at a synchrotron source.","Structure","2004","12(4)","537-45","JCSG",""
"999","15048835","method","Das R, Gerstein M","A method using active-site sequence conservation to find functional shifts in protein families: application to the enzymes of central metabolism, leading to the identification of an anomalous isocitrate dehydrogenase in pathogens.","Proteins","2004","55(2)","455-63","NESG",""
"973","15048098","method","Stevens RC","Long live structural biology.","Nature Structural & Molecular Biology","2004","11(4)","293-5","JCSG",""
"1030","15040978","method","Valafar H, Prestegard JH","REDCAT: a residual dipolar coupling analysis tool.","Journal of Magnetic Resonance","2004","167(2)","228-41","SECSG",""
"1064","15036155","method","Yakunin AF, Yee AA, Savchenko A, Edwards AM, Arrowsmith CH","Structural proteomics: a tool for genome annotation.","Current Opinion in Chemical Biology","2004","8(1)","42-8","MCSG+NESG",""
"409","15036151","method","Gerstein  M, Echols  N","Exploring the range of protein flexibility, from a structural proteomics perspective.","Current Opinion in Chemical Biology","2004","8","14-9","NESG",""
"988","15023070","method","Jin S, Kurtz DM, Liu ZJ, Rose J, Wang BC","X-ray crystal structure of Desulfovibrio vulgaris rubrerythrin with zinc substituted into the [Fe(SCys)4] site and alternative diiron site structures.","Biochemistry","2004","43(11)","3204-13","SECSG",""
"991","14993685","method","Deng L, Liu ZJ, Ashida H, Li SC, Li YT, Horanyi P, Tempel W, Rose J, Wang BC","Crystallization and preliminary X-ray analysis of GlcNAc alpha 1,4Gal-releasing endo-beta-galactosidase from Clostridium perfringens.","Acta Crystallographica Section D: Biological Crystallography","2004","60(Pt 3)","537-8","SECSG",""
"989","14993677","method","Deng L, Markova SV, Vysotski ES, Liu ZJ, Lee J, Rose J, Wang BC","Preparation and X-ray crystallographic analysis of the Ca2+-discharged photoprotein obelin.","Acta Crystallographica Section D: Biological Crystallography","2004","60(Pt 3)","512-4","SECSG",""
"984","14993675","method","Fu ZQ, Rose JP, Wang BC","Monitoring the anomalous scattering signal and noise levels in X-ray diffraction of crystals.","Acta Crystallographica Section D: Biological Crystallography","2004","60(Pt 3)","499-506","SECSG",""
"1028","14993202","method","Ye Y, Godzik A","Comparative analysis of protein domain organization.","Genome Research","2004","14(3)","343-53","JCSG",""
"972","14992518","method","Bourne PE, Allerston CK, Krebs W, Li W, Shindyalov IN, Godzik A, Friedberg I, Liu T, Wild D, Hwang S, Ghahramani Z, Chen L, Westbrook J","The status of structural genomics defined through the analysis of current targets and structures.","Books and Proceedings","2004","","375-86","JCSG",""
"998","14967035","method","Chien CY, Xu Y, Xiao R, Aramini JM, Sahasrabudhe PV, Krug RM, Montelione GT","Biophysical characterization of the complex between double-stranded RNA and the N-terminal domain of the NS1 protein from influenza A virus: evidence for a novel RNA-binding mode.","Biochemistry","2004","43(7)","1950-62","NESG",""
"1147","14960460","method","Przulj N, Wigle DA, Jurisica I","Functional topology in a network of protein interactions.","Bioinformatics","2004","20(3)","340-8","NESG",""
"1148","14872126","method","Moseley HN, Sahota G, Montelione GT","Assignment validation software suite for the evaluation and presentation of protein resonance assignment data.","Journal of Biomolecular NMR","2004","28(4)","341-55","NESG",""
"960","14871873","method","Kantardjieff KA, Rupp B","Protein isoelectric point as a predictor for increased crystallization screening efficiency.","Bioinformatics","2004","20(14)","2162-8","TB",""
"985","14766299","method","Finley JB, Qiu SH, Luan CH, Luo M","Structural genomics for Caenorhabditis elegans: high throughput protein expression analysis.","Protein Expression and Purification","2004","34(1)","49-55","SECSG",""
"1012","14755156","method","Kim S, Szyperski T","GFT NMR experiments for polypeptide backbone and 13Cbeta chemical shift assignment.","Journal of Biomolecular NMR","2004","28(2)","117-30","NESG",""
"981","14752257","method","Shi J, Pelton JG, Cho HS, Wemmer DE","Protein signal assignments using specific labeling and cell-free synthesis.","Journal of Biomolecular NMR","2004","28(3)","235-47","BSGC",""
"968","14752198","method","Holton J, Alber T","Automated protein crystal structure determination using ELVES.","Proceedings of the National Academy of Sciences of the United States of America","2004","101(6)","1537-42","TB",""
"992","14741208","method","Goh CS, Lan N, Douglas SM, Wu B, Echols N, Smith A, Milburn D, Montelione GT, Zhao H, Gerstein M","Mining the structural genomics pipeline: identification of protein properties that affect high-throughput experimental analysis.","Journal of Molecular Biology","2004","336(1)","115-30","NESG",""
"1144","14718654","method","Zheng D, Aramini JM, Montelione GT","Validation of helical tilt angles in the solution NMR structure of the Z domain of Staphylococcal protein A by combined analysis of residual dipolar coupling and NOE data.","Protein Science","2004","13(2)","549-54","NESG",""
"974","14715906","method","Pantazatos D, Kim JS, Klock HE, Stevens RC, Wilson IA, Lesley SA, Woods VL","Rapid refinement of crystallographic protein construct definition employing enhanced hydrogen/deuterium exchange MS.","Proceedings of the National Academy of Sciences of the United States of America","2004","101(3)","751-6","JCSG",""
"996","14715091","method","Alexandrov V, Gerstein M","Using 3D Hidden Markov Models that explicitly represent spatial coordinates to model and compare protein structures.","BMC Bioinformatics","2004","5(3)","2","NESG",""
"1061","14691322","method","Grosse-Kunstleve RW, Sauter NK, Adams PD","Numerically stable algorithms for the computation of reduced unit cells.","Acta Crystallographica Section A: Foundations of Crystallography","2004","60(Pt 1)","1-6","BSGC",""
"1072","14684931","method","Deng J, Davies DR, Wisedchaisri G, Wu M, Hol WG, Mehlin C","An improved protocol for rapid freezing of protein samples for long-term storage.","Acta Crystallographica Section D: Biological Crystallography","2004","60(Pt 1)","203-4","SGPP",""
"1096","14681398","method","Pieper U, Eswar N, Braberg H, Madhusudhan MS, Davis FP, Stuart AC, Mirkovic N, Rossi A, Marti-Renom MA, Fiser A, Webb B, Greenblatt D, Huang CC, Ferrin TE, Sali A","MODBASE, a database of annotated comparative protein structure models, and associated resources.","Nucleic Acids Research","2004","32(Database issue)","D217-22","NYSGXRC",""
"1059","14681391","method","Chandonia JM, Hon G, Walker NS, Lo Conte L, Koehl P, Levitt M, Brenner SE","The ASTRAL Compendium in 2004.","Nucleic Acids Research","2004","32(Database issue)","D189-92","BSGC",""
"358","14670345","other","Smith CV, Sharma V, Sacchettini JC","TB drug discovery: addressing issues of persistence and resistance.","Tuberculosis","2004","84(1-2)","45-55","TB",""
"1093","","method","Arshadi N, Jurisica I","Maintaining case-based reasoning systems: A machine learning approach","Books and Proceedings","2004","3155","17-31","NESG",""
"486","","other","Jurisica I, Mylopoulos J, Yu E","Ontologies for knowledge management: An information systems perspective","International Journal of Intelligent Systems","2004","6(4)","380-401","NESG",""
"1092","","method","Bern M, Goldberg D, Stevens RC, Kuhn P","Automatic classification of protein crystallization images using a curve tracking algorithm","Journal of Applied Crystallography","2004","37","279-287","JCSG",""
"497","","other","Wrzeszczynski KO, Rost B ","Cataloging proteins in cell cycle control","Books and Proceedings","2004","241","219-233","NESG",""
"1014","","method","Li J, Zhang Z, Fan E","Solid-phase synthesis of 1,5-substituted 2-(N-alkylamino)-imidazolidin-4-ones","Tetrahedron Letters","2004","45(6)","1267-9","SGPP",""
"287","","other","Jurisica I, Mylopoulos J, Yu E","Application of case-based reasoning in molecular biology","Artificial Intelligence Magazine","2004","25(1)","85-95","NESG",""
"1089","","method","Angelini ED, Wang Y, Laine AF ","Classification of micro array genomic images with brushlet analysis and neural networks","Books and Proceedings","2004","","","NESG",""
"961","","method","Kantardjieff KA,  Jamshidian M, Rupp B","Distributions of pI versus pH provide prior information for the design of crystallization screening experiments: response to comment on 'Protein isoelectric point as a predictor for increased crystallization screening efficiency'","Bioinformatics","2004","20(14)","2171-2174","TB",""
"1094","","method","Wang Y, Angelini E, Mehra M, Kim D, Laine A","A microarray genomic image recognition system with Laplacian pyramid representations","Books and Proceedings","2004","","","NESG",""
"1086","","method","Painter J, Merritt EA","mmLib Python toolkit for manipulating annotated structural models of biological macromolecules","Journal of Applied Crystallography","2004","37","174-8","SGPP",""
"1088","","method","Georgiev A, Allen PK, Edstrom W","Visually-guided protein crystal manipulation using micromachined silicon tools","Books and Proceedings","2004","","","NESG",""
"311","","method","Stevens RC","The cost and value of three-dimensional protein structure","Drug Discovery World","2003","4","35-48","JCSG",""
"1246","14696385","method","Fiser A, Sali A","Modeller: generation and refinement of homology-based protein structure models.","Methods in Enzymology","2003","374(Pt 7)","461-91","NYSGXRC",""
"1163","14696380","method","Podjarny A, Schneider TR, Cachau RE, Joachimiak A","Structural information content at high resolution: MAD versus native.","Methods in Enzymology","2003","374(4)","321-41","MCSG",""
"412","14685688","method","Rost  B, Liu  J, Nair  R, Wrzeszczynski  KO, Ofran  Y","Automatic prediction of protein function.","Cellular and Molecular Life Science","2003","60","2637-50","NESG",""
"359","14675542","other","Smith CV, Sacchettini JC","Mycobacterium tuberculosis: a model system for structural genomics.","Current Opinion in Structural Biology","2003","13(6)","658-64","TB",""
"1191","14674269","method","Koth CM, Orlicky SM, Larson SM, Edwards AM","Use of limited proteolysis to identify protein domains suitable for structural analysis.","Methods in Enzymology","2003","368(13)","77-84","MCSG",""
"1209","14674268","method","Weselak M, Patch MG, Selby TL, Knebel G, Stevens RC","Robotics for automated crystal formation and analysis.","Methods in Enzymology","2003","368(Pt 6)","45-76","JCSG",""
"1231","14649297","method","Kim SH, Shin DH, Choi IG, Schulze-Gahmen U, Chen S, Kim R","Structure-based functional inference in structural genomics.","Journal of Structural and Functional Genomics","2003","4(2-3)","129-35","BSGC","1n0f"
"1273","14646078","method","Reddy V, Swanson SM, Segelke B, Kantardjieff KA, Sacchettini JC, Rupp B","Effective electron-density map improvement and structure validation on a Linux multi-CPU web cluster: The TB Structural Genomics Consortium Bias Removal Web Service.","Acta Crystallographica Section D: Biological Crystallography","2003","59(Pt 12)","2200-10","TB",""
"1236","14592432","method","Liu ZJ, Vysotski ES, Deng L, Lee J, Rose J, Wang BC","Atomic resolution structure of obelin: soaking with calcium enhances electron density of the second oxygen atom substituted at the C2-position of coelenterazine.","Biochemical and Biophysical Research Communications","2003","311(2)","433-9","SECSG",""
"1194","14573959","method","Borek D, Minor W, Otwinowski Z","Measurement errors and their consequences in protein crystallography.","Acta Crystallographica Section D: Biological Crystallography","2003","59(Pt 11)","2031-8","MCSG",""
"419","14564010","method","Jansen  R, Yu  H, Greenbaum  D, Kluger  Y, Krogan  NJ, Chung  S, Emili  A, Snyder  M, Greenblatt  JF, Gerstein  M","A Bayesian networks approach for predicting protein-protein interactions from genomic data.","Science","2003","302","449-53","NESG",""
"362","14557547","other","Hsu T, Hingley-Wilson SM, Chen B, Chen M, Dai AZ, Morin PM, Marks CB, Padiyar J, Goulding C, Gingery M, Eisenberg D, Russell RG, Derrick SC, Collins FM, Morris SL, King CH, Jacobs WR","The primary mechanism of attenuation of bacillus Calmette-Guerin is a loss of secreted lytic function required for invasion of lung interstitial tissue.","Proceedings of the National Academy of Sciences of the United States of America","2003","100(21)","12420-5","TB",""
"1152","14534198","method","Ye Y, Godzik A","Flexible structure alignment by chaining aligned fragment pairs allowing twists.","Bioinformatics","2003","19 Suppl 2(20)","ii246-55","JCSG",""
"1193","14529621","method","VanLoock MS, Yu X, Yang S, Galkin VE, Huang H, Rajan SS, Anderson WF, Stohl EA, Seifert HS, Egelman EH","Complexes of RecA with LexA and RecX differentiate between active and inactive RecA nucleoprotein filaments.","Journal of Molecular Biology","2003","333(2)","345-54","MCSG",""
"1248","14517980","method","Li W, Zhang Y, Kihara D, Huang YJ, Zheng D, Montelione GT, Kolinski A, Skolnick J","TOUCHSTONEX: protein structure prediction with sparse NMR data.","Proteins","2003","53(2)","290-306","NESG",""
"1167","14512345","method","Harrison A, Pearl F, Sillitoe I, Slidel T, Mott R, Thornton J, Orengo C","Recognizing the fold of a protein structure.","Bioinformatics","2003","19(14)","1748-59","MCSG",""
"1230","14500824","method","Sims GE, Kim SH","Global mapping of nucleic acid conformational space: dinucleoside monophosphate conformations and transition pathways among conformational classes.","Nucleic Acids Research","2003","31(19)","5607-16","BSGC",""
"1171","14499904","method","Goulding CW, Perry LJ, Anderson D, Sawaya MR, Cascio D, Apostol MI, Chan S, Parseghian A, Wang SS, Wu Y, Cassano V, Gill HS, Eisenberg D","Structural genomics of Mycobacterium tuberculosis: a preliminary report of progress at UCLA.","Biophysical Chemistry","2003","105(2-3)","361-70","TB",""
"1249","12975580","method","Xia Y, Yee A, Arrowsmith CH, Gao X","1H(C) and 1H(N) total NOE correlations in a single 3D NMR experiment. 15N and 13C time-sharing in t1 and t2 dimensions for simultaneous data acquisition.","Journal of Biomolecular NMR","2003","27(3)","193-203","NESG",""
"1190","12967960","method","Barker JA, Thornton JM","An algorithm for constraint-based structural template matching: application to 3D templates with statistical analysis.","Bioinformatics","2003","19(13)","1644-9","MCSG",""
"1195","12964375","method","Koth CM, Edwards AM","From clone to crystal: maximizing the amount of protein samples for structure determination.","Advances in Protein Chemistry","2003","65(Pt 11)","343-52","MCSG",""
"1241","12943363","method","Zolnai Z, Lee PT, Li J, Chapman MR, Newman CS, Phillips GN, Rayment I, Ulrich EL, Volkman BF, Markley JL","Project management system for structural and functional proteomics: Sesame.","Journal of Structural and Functional Genomics","2003","4(1)","11-23","CESG",""
"1225","12931005","method","Maxwell KL, Bona D, Liu C, Arrowsmith CH, Edwards AM","Refolding out of guanidine hydrochloride is an effective approach for high-throughput structural studies of small proteins.","Protein Science","2003","12(9)","2073-80","NESG",""
"1151","12930987","method","Liu T, Rojas A, Ye Y, Godzik A","Homology modeling provides insights into the binding mode of the PAAD/DAPIN/pyrin domain, a fourth member of the CARD/DD/DED domain family.","Protein Science","2003","12(9)","1872-81","JCSG",""
"1272","12930986","method","Kantardjieff KA, Rupp B","Matthews coefficient probabilities: Improved estimates for unit cell contents of proteins, DNA, and protein-nucleic acid complex crystals.","Protein Science","2003","12(9)","1865-71","TB",""
"421","12930981","method","Goldsmith-Fischman  S, Honig  B","Structural genomics: computational methods for structure analysis.","Protein Science","2003","12","1813-21","NESG",""
"1262","12925793","method","Cumbaa CA, Lauricella A, Fehrman N, Veatch C, Collins R, Luft J, DeTitta G, Jurisica I","Automatic classification of sub-microlitre protein-crystallization trials in 1536-well plates.","Acta Crystallographica Section D: Biological Crystallography","2003","59(Pt 9)","1619-27","NESG",""
"1240","12912836","method","Valafar H, Prestegard JH","Rapid classification of a protein fold family using a statistical analysis of dipolar couplings.","Bioinformatics","2003","19(12)","1549-55","SECSG",""
"361","12906835","other","Terwilliger TC, Park MS, Waldo GS, Berendzen J, Hung LW, Kim CY, Smith CV, Sacchettini JC, Bellinzoni M, Bossi R, De Rossi E, Mattevi A, Milano A, Riccardi G, Rizzi M, Roberts MM, Coker AR, Fossati G, Mascagni P, Coates AR, Wood SP, Goulding CW, Apostol MI, Anderson DH, Gill HS, Eisenberg DS, Taneja B, Mande S, Pohl E, Lamzin V, Tucker P, Wilmanns M, Colovos C, Meyer-Klaucke W, Munro AW, McLean KJ, Marshall KR, Leys D, Yang JK, Yoon HJ, Lee BI, Lee MG, Kwak JE, Han BW, Lee JY, Baek SH, Suh SW, Komen MM, Arcus VL, Baker EN, Lott JS, Jacobs W, Alber T, Rupp B","The TB structural genomics consortium: a resource for Mycobacterium tuberculosis biology.","Tuberculosis","2003","83(4)","223-49","TB",""
"1165","12880206","method","Watson JD, Todd AE, Bray J, Laskowski RA, Edwards A, Joachimiak A, Orengo CA, Thornton JM","Target selection and determination of function in structural genomics.","International Union of Biochemistry and Molecular Biology Life","2003","55(4-5)","249-55","MCSG",""
"1245","12878200","method","Huang RY, Boulton SJ, Vidal M, Almo SC, Bresnick AR, Chance MR","High-throughput expression, purification, and characterization of recombinant Caenorhabditis elegans proteins.","Biochemical and Biophysical Research Communications","2003","307(4)","928-34","NYSGXRC",""
"1228","12853614","method","John B, Sali A","Comparative protein structure modeling by iterative alignment, model building and model assessment.","Nucleic Acids Research","2003","31(14)","3982-92","NYSGXRC",""
"1235","12832772","method","Karaveg K, Liu ZJ, Tempel W, Doyle RJ, Rose JP, Wang BC","Crystallization and preliminary X-ray diffraction analysis of lectin-1 from Pseudomonas aeruginosa.","Acta Crystallographica Section D: Biological Crystallography","2003","59(Pt 7)","1241-2","SECSG",""
"1189","12832756","method","Brunzelle JS, Shafaee P, Yang X, Weigand S, Ren Z, Anderson WF","Automated crystallographic system for high-throughput protein structure determination.","Acta Crystallographica Section D: Biological Crystallography","2003","59(Pt 7)","1138-44","MCSG",""
"1192","12831888","method","Lee D, Grant A, Buchan D, Orengo C","A structural perspective on genome evolution.","Current Opinion in Structural Biology","2003","13(3)","359-69","MCSG",""
"417","12824431","method","Liu  J, Rost  B","NORSp: Predictions of long regions without regular secondary structure.","Nucleic Acids Research","2003","31","3833-5","NESG",""
"1218","12824331","method","Eswar N, John B, Mirkovic N, Fiser A, Ilyin VA, Pieper U, Stuart AC, Marti-Renom MA, Madhusudhan MS, Yerkovich B, Sali A","Tools for comparative protein structure modeling and analysis.","Nucleic Acids Research","2003","31(13)","3375-80","NYSGXRC",""
"1203","12824315","method","Koh IY, Eyrich VA, Marti-Renom MA, Przybylski D, Madhusudhan MS, Eswar N, Graña O, Pazos F, Valencia A, Sali A, Rost B","EVA: Evaluation of protein structure prediction servers.","Nucleic Acids Research","2003","31(13)","3311-5","NESGC+NYSGXRC",""
"423","12824314","method","Eyrich  VA, Rost  B","META-PP: single interface to crucial prediction servers.","Nucleic Acids Research","2003","31","3308-10","NESG",""
"425","12824310","method","Carter  P, Andersen  CA, Rost  B","DSSPcont: Continuous secondary structure assignments for proteins.","Nucleic Acids Research","2003","31","3293-5","NESG",""
"427","12809609","other","Gao H, Sengupta J, Valle M, Korostelev A, Eswar N, Stagg SM, Van Roey P, Agrawal RK, Harvey SC, Sali A, Chapman MS, Frank J","Study of the structural dynamics of the E coli 70S ribosome using real-space refinement.","Cell","2003","113(6)","789-801","NYSGXRC",""
"1250","12784215","method","Kimber MS, Vallee F, Houston S, Necakov A, Skarina T, Evdokimova E, Beasley S, Christendat D, Savchenko A, Arrowsmith CH, Vedadi M, Gerstein M, Edwards AM","Data mining crystallization databases: knowledge-based approaches to optimize protein crystal screens.","Proteins","2003","51(4)","562-8","NESG",""
"415","12782323","method","Ofran  Y, Rost  B","Predicted protein-protein interaction sites from local sequence information.","FEBS Letters","2003","544","236-9","NESG",""
"1208","12777766","method","Page R, Grzechnik SK, Canaves JM, Spraggon G, Kreusch A, Kuhn P, Stevens RC, Lesley SA","Shotgun crystallization strategy for structural genomics: an optimized two-tiered crystallization screen against the Thermotoga maritima proteome.","Acta Crystallographica Section D: Biological Crystallography","2003","59(Pt 6)","1028-37","JCSG",""
"1261","12771210","method","Goh CS, Lan N, Echols N, Douglas SM, Milburn D, Bertone P, Xiao R, Ma LC, Zheng D, Wunderlich Z, Acton T, Montelione GT, Gerstein M","SPINE 2: a system for collaborative structural proteomics within a federated database framework.","Nucleic Acids Research","2003","31(11)","2833-8","NESG",""
"1164","12771208","method","Jones S, Barker JA, Nobeli I, Thornton JM","Using structural motif templates to identify proteins with DNA binding function.","Nucleic Acids Research","2003","31(11)","2811-23","MCSG",""
"1244","12766409","method","Doreleijers JF, Mading S, Maziuk D, Sojourner K, Yin L, Zhu J, Markley JL, Ulrich EL","BioMagResBank database with sets of experimental NMR constraints corresponding to the structures of over 1400 biomolecules deposited in the Protein Data Bank.","Journal of Biomolecular NMR","2003","26(2)","139-46","CESG",""
"1263","12761394","method","Zheng D, Huang YJ, Moseley HN, Xiao R, Aramini J, Swapna GV, Montelione GT","Automated protein fold determination using a minimal NMR constraint strategy.","Protein Science","2003","12(6)","1232-46","NESG",""
"1237","12755603","method","Vysotski ES, Liu ZJ, Markova SV, Blinks JR, Deng L, Frank LA, Herko M, Malikova NP, Rose JP, Wang BC, Lee J","Violet bioluminescence and fast kinetics from W92F obelin: structure-based proposals for the bioluminescence triggering and the identification of the emitting species.","Biochemistry","2003","42(20)","6013-24","SECSG",""
"1207","12718932","method","Hosfield D, Palan J, Hilgers M, Scheibe D, McRee DE, Stevens RC","A fully integrated protein crystallization platform for small-molecule drug discovery.","Journal of Structural Biology","2003","142(1)","207-17","JCSG",""
"1239","12718931","method","DeLucas LJ, Bray TL, Nagy L, McCombs D, Chernov N, Hamrick D, Cosenza L, Belgovskiy A, Stoops B, Chait A","Efficient protein crystallization.","Journal of Structural Biology","2003","142(1)","188-206","SECSG",""
"1202","12718929","method","Luft JR, Collins RJ, Fehrman NA, Lauricella AM, Veatch CK, DeTitta GT","A deliberate approach to screening for initial crystallization conditions of biological macromolecules.","Journal of Structural Biology","2003","142(1)","170-9","SGPP+NESG",""
"1169","12718928","method","Rupp B","Maximum-likelihood crystallization.","Journal of Structural Biology","2003","142(1)","162-9","TB",""
"371","12718927","method","Hui R, Edwards A","High-throughput protein crystallization.","Journal of Structural Biology","2003","142(1)","154-61","MCSG",""
"1270","12718925","method","Goulding CW, Perry LJ","Protein production in Escherichia coli for structural studies by X-ray crystallography.","Journal of Structural Biology","2003","142(1)","133-43","TB",""
"1216","12714773","method","Otwinowski Z, Borek D, Majewski W, Minor W","Multiparametric scaling of diffraction intensities.","Acta Crystallographica Section A: Foundations of Crystallography","2003","59(Pt 3)","228-34","MCSG",""
"1233","12706907","method","Busso D, Kim R, Kim SH","Expression of soluble recombinant proteins in a cell-free system using a 96-well format.","Journal of Biochemical and Biophysical Methods","2003","55(3)","233-40","BSGC",""
"1217","12679813","method","Reboul J, Vaglio P, Rual JF, Lamesch P, Martinez M, Armstrong CM, Li S, Jacotot L, Bertin N, Janky R, Moore T, Hudson JR, Hartley JL, Brasch MA, Vandenhaute J, Boulton S, Endress GA, Jenna S, Chevet E, Papasotiropoulos V, Tolias PP, Ptacek J, Snyder M, Huang R, Chance MR, Lee H, Doucette-Stamm L, Hill DE, Vidal M","C. elegans ORFeome version 1.1: experimental verification of the genome annotation and resource for proteome-scale protein expression.","Nature Genetics","2003","34(1)","35-41","NYSGXRC",""
"1226","12647406","method","Burley SK, Bonanno JB","Structural genomics.","Methods of Biochemical Analysis","2003","44(2-3)","591-612","NYSGXRC",""
"413","12647405","method","Rost  B","Prediction in 1D: secondary structure, membrane helices, and accessibility.","Methods of Biochemical Analysis","2003","44","559-87","NESG",""
"376","12647394","method","Andersen  CA, Rost  B","Secondary structure assignment.","Methods of Biochemical Analysis","2003","44","341-63","NESG",""
"1242","12647383","method","Markley JL, Ulrich EL, Westler WM, Volkman BF","Macromolecular structure determination by NMR spectroscopy.","Methods of Biochemical Analysis","2003","44(Pt 2)","89-113","CESG",""
"1238","12641476","method","Adams MW, Dailey HA, DeLucas LJ, Luo M, Prestegard JH, Rose JP, Wang BC","The Southeast Collaboratory for Structural Genomics: a high-throughput gene to structure factory.","Accounts of Chemical Research","2003","36(3)","191-8","SECSG",""
"1210","12641475","method","Yee A, Pardee K, Christendat D, Savchenko A, Edwards AM, Arrowsmith CH","Structural proteomics: toward high-throughput structural biology as a tool in functional genomics.","Accounts of Chemical Research","2003","36(3)","183-9","MCSG+NESG",""
"1274","12641474","method","Rupp B","High-throughput crystallography at an affordable cost: the TB Structural Genomics Consortium Crystallization Facility.","Accounts of Chemical Research","2003","36(3)","173-81","TB",""
"422","12637721","method","Gerstein  M, Edwards  A, Arrowsmith  CH, Montelione  GT","Structural genomics: current progress.","Science","2003","299","1663","NESG",""
"1188","12634795","method","Sali A, Glaeser R, Earnest T, Baumeister W","From words to literature in structural proteomics.","Nature","2003","422(6928)","216-25","NYSGXRC",""
"1232","12606708","method","Hou J, Sims GE, Zhang C, Kim SH","A global representation of the protein fold space.","Proceedings of the National Academy of Sciences of the United States of America","2003","100(5)","2386-90","BSGC",""
"1234","12585918","method","Li J, Zhang G, Zhang Z, Fan E","TFA-sensitive arylsulfonylthiourea-assisted synthesis of N,N'-substituted guanidines","Journal of Organic Chemistry","2003","68(4)","1611-4","SGPP",""
"1153","12557182","method","Savchenko A, Yee A, Khachatryan A, Skarina T, Evdokimova E, Pavlova M, Semesi A, Northey J, Beasley S, Lan N, Das R, Gerstein M, Arrowmith CH, Edwards AM","Strategies for structural proteomics of prokaryotes: Quantifying the advantages of studying orthologous proteins and of using both NMR and X-ray crystallography approaches.","Proteins","2003","50(3)","392-9","MCSG+NESG",""
"1243","12554941","method","Jamrog DC, Zhang Y, Phillips GN","SOMoRe: a multi-dimensional search and optimization approach to molecular replacement.","Acta Crystallographica Section D: Biological Crystallography","2003","59(Pt 2)","304-14","CESG",""
"1259","12553842","method","Kim S, Szyperski T","GFT NMR, a new approach to rapidly obtain precise high-dimensional NMR spectral information.","Journal of the American Chemical Society","2003","125(5)","1385-93","NESG",""
"420","12547426","method","Lan  N, Montelione  GT, Gerstein  M","Ontologies for proteomics: towards a systematic definition of structure and function that scales to the genome level.","Current Opinion in Chemical Biology","2003","7","44-54","NESG",""
"1229","12547423","method","Zhang C, Kim SH","Overview of structural genomics: from structure to function.","Current Opinion in Chemical Biology","2003","7(1)","28-32","BSGC",""
"418","12547420","method","Liu  J, Rost  B","Domains, motifs and clusters in the protein universe.","Current Opinion in Chemical Biology","2003","7","5-11","NESG",""
"372","12520054","method","Buchan DW, Rison SC, Bray JE, Lee D, Pearl F, Thornton JM, Orengo CA","Gene3D: structural assignments for the biologist and bioinformaticist alike.","Nucleic Acids Research","2003","31(1)","469-73","MCSG",""
"1166","12520050","method","Pearl FM, Bennett CF, Bray JE, Harrison AP, Martin N, Shepherd A, Sillitoe I, Thornton J, Orengo CA","The CATH database: an extended protein family resource for structural and functional genomics.","Nucleic Acids Research","2003","31(1)","452-5","MCSG",""
"424","12520036","method","Carter  P, Liu  J, Rost  B","PEP: Predictions for Entire Proteomes.","Nucleic Acids Research","2003","31","410-3","NESG",""
"416","12520032","method","Nair  R, Carter  P, Rost  B","NLSdb: database of nuclear localization signals.","Nucleic Acids Research","2003","31","397-9","NESG",""
"1187","12499313","method","Ilyin VA, Pieper U, Stuart AC, Marti-Renom MA, McMahan L, Sali A","ModView, visualization of multiple protein sequences and structures.","Bioinformatics","2003","19(1)","165-6","NYSGXRC",""
"414","12488102","method","Ofran  Y, Rost  B","Analysing six types of protein-protein interfaces.","Journal of Molecular Biology","2003","325","377-87","NESG",""
"428","12424232","other","Pilloff D, Dabovic K, Romanowski MJ, Bonanno JB, Doherty M, Burley SK, Leyh TS","The kinetic mechanism of phosphomevalonate kinase.","Journal of Biological Chemistry","2003","278(7)","4510-5","NYSGXRC",""
"494","","other","Xia E, Jurisica I","Optimizing job scheduling in the grid environment","Books and Proceedings","2003","","447-451","NESG",""
"1213","","method","Georgiev A, Allen PK, Mezouar Y","Microrobotic crystal mounting using Computer Vision","Books and Proceedings","2003","","27-31","NESG",""
"1150","","method","Aceti DJ, Blommel PG, Endo Y, Fox BG, Frederick RO, Hegeman AD, Jeon WB, Kimball TL, Lee JM, Newman CS, Peterson FC, Sawasaki T, Seder KD, Sussman MR, Ulrich EL, Wrobel RL, Thao S, Vinarov DA, Volkman BF, Zhao Q ","Role of nucleic acid and protein manipulation technologies in high-throughput structural biology efforts","Biopolymers","2003","8","469-96","CESG",""
"1214","","method","Grosse-Kunstleve RW, Adams PD","State of the Toolbox: an overview of the Crystallography Toolbox (CCTBX)","Books and Proceedings","2003","","28-38","BSGC",""
"1227","","method","Godzik A, Canaves J, Grzechnik S, Jaroszewski L, Morse A, Ouyang J, Wang X, West B, Wooley J. ","Challenges of structural genomics: bioinformatics","Biosilico","2003","1","36-41","JCSG",""
"495","","other","Rost B, Liu J, Przybylski D, Nair R, Bigelow H, Wrzeszczynski KO, Ofran Y","Predicting protein structure through evolution","Books and Proceedings","2003","","1789-1811","NESG",""
"496","","other","Rost B","Neural networks predict protein structure: hype or hit?","Books and Proceedings","2003","","34-50","NESG",""
"1211","","method","Marti-Renom MA, Fiser A, Madhusudhan MS, John B, Stuart A, Eswar N, Pieper P, Shen MY, Sali A","Modeling protein structure from its sequence","Books and Proceedings","2003","","1-32","NYSGXRC",""
"490","","other","Edwards AM, Arrowsmith CH, Hui R, Marino F, Savchenko A, Yee A ","Determination, analysis, and applications for drug discovery","Books and Proceedings","2003","","9-25","NESG",""
"1215","","method","Grosse-Kunstleve RW, Wong B, Adams PD","cctbx news: Fast triplet generator for direct methods, Gallery of direct-space asymmetric units, et. al","Books and Proceedings","2003","","10-16","BSGC",""
"1555","","method","Chiu HJ, McPhillips T, McPhillips S, Sharp K, Eriksson T, Sauter N, Soltis M, Kuhn P","Collaboratory for Macromolecular Crystallography at SSRL","Books and Proceedings","2002","","","JCSG",""
"1554","","method","Selby TL, Stevens RC","Bioinformatics and High-throughput Protein Production for Structural Genomics","Books and Proceedings","2002","","281-304","JCSG",""
"1328","24899734","method","Cohen AE, Ellis PJ, Miller MD, Deacon AM, Phizackerley RP","An automated system to mount cryo-cooled protein crystals on a synchrotron beam line, using compact sample cassettes and a small-scale robot.","Journal of Applied Crystallography","2002","35","720-726","JCSG",""
"433","15130854","method","Chen  CP, Rost  B","State-of-the-art in membrane protein prediction.","Applied Bioinformatics","2002","1","21-35","NESG",""
"1344","12836706","method","Kennedy  MA, Montelione  GT, Arrowsmith  CH, Markley  JL","Role for NMR in structural genomics.","Journal of Structural and Functional Genomics","2002","2","155-69","CESG",""
"1294","12836702","method","Huang L, Hung L, Odell M, Yokota H, Kim R, Kim SH","Structure-based experimental confirmation of biochemical function to a methyltransferase, MJ0882, from hyperthermophile Methanococcus jannaschii.","Journal of Structural and Functional Genomics","2002","2(3)","121-7","BSGC",""
"1338","12836666","method","Monleón D, Colson K, Moseley HN, Anklin C, Oswald R, Szyperski T, Montelione GT","Rapid analysis of protein backbone resonance assignments using cryogenic probes, a distributed Linux-based computing architecture, and an integrated set of spectral analysis tools.","Journal of Structural and Functional Genomics","2002","2(2)","93-101","NESG",""
"437","12836664","method","Jansen  R, Lan  N, Qian  J, Gerstein  M","Integration of genomic datasets to predict protein complexes in yeast.","Journal of Structural and Functional Genomics","2002","2","71-81","NESG",""
"434","12836663","method","Mueller  L, Montelione  GT","Structural genomics in pharmaceutical design.","Journal of Structural and Functional Genomics","2002","2","67-70","NESG",""
"1299","12594078","method","Valafar H, Prestegard JH, Valafar F","Datamining protein structure databanks for crystallization patterns of proteins.","Annals of the New York Academy of Sciences","2002","980(Pt 6)","13-22","SECSG",""
"1307","12503320","method","Yoon JR, Laible PD, Gu M, Scott HN, Collart FR","Express primer tool for high-throughput gene cloning and expression.","Biotechniques","2002","33(6)","1328-33","MCSG",""
"1362","12495027","method","Baran MC, Moseley HN, Sahota G, Montelione GT","SPINS: standardized protein NMR storage. A data dictionary and object-oriented relational database for archiving protein NMR spectra.","Journal of Biomolecular NMR","2002","24(2)","113-21","NESG",""
"1306","12486223","method","Hansen CL, Skordalakes E, Berger JM, Quake SR","A robust and scalable microfluidic metering method that allows protein crystal growth by free interface diffusion.","Proceedings of the National Academy of Sciences of the United States of America","2002","99(26)","16531-6","TB",""
"364","12462144","other","Goulding CW, Apostol M, Anderson DH, Gill HS, Smith CV, Kuo MR, Yang JK, Waldo GS, Suh SW, Chauhan R, Kale A, Bachhawat N, Mande SC, Johnston JM, Lott JS, Baker EN, Arcus VL, Leys D, McLean KJ, Munro AW, Berendzen J, Sharma V, Park MS, Eisenberg D, Sacchettini J, Alber T, Rupp B, Jacobs W, Terwilliger TC","The TB structural genomics consortium: providing a structural foundation for drug discovery.","Current Drug Targets - Infectious Disorders","2002","2(2)","121-41","TB",""
"1332","12449417","method","Xia Y, Arrowsmith CH, Szyperski T","Novel projected 4D triple resonance experiments for polypeptide backbone chemical shift assignment.","Journal of Biomolecular NMR","2002","24(1)","41-50","NESG",""
"464","12441382","method","Nair  R, Rost  B","Sequence conserved for subcellular localization.","Protein Science","2002","11","2836-47","NESG",""
"465","12441377","method","Chen  CP, Kernytsky  A, Rost  B","Transmembrane helix predictions revisited.","Protein Science","2002","11","2774-91","NESG",""
"431","12441376","method","Chen  CP, Rost  B","Long membrane helices and short loops predicted less accurately.","Protein Science","2002","11","2766-73","NESG",""
"1363","12432951","method","Chen J, Acton TB, Basu SK, Montelione GT, Inouye M","Enhancement of the solubility of proteins overexpressed in Escherichia coli by heat shock.","Journal of Molecular Microbiology and Biotechnology","2002","4(6)","519-24","NESG",""
"432","12429057","method","Jurisica  I, Wigle  DA","Understanding biology through intelligent systems.","Genome Biology","2002","3","reports4036","NESG",""
"1320","12417203","method","Harrison A, Pearl F, Mott R, Thornton J, Orengo C","Quantifying the similarities within fold space.","Journal of Molecular Biology","2002","323(5)","909-26","MCSG",""
"439","12417195","method","Zhang  ZL, Harrison  PM, Gerstein  M","Digging deep for ancient relics: a survey of protein motifs in the intergenic sequences of four eukaryotic genomes.","Journal of Molecular Biology","2002","323","811-22","NESG",""
"1280","12413557","method","Kuhn P, Wilson K, Patch MG, Stevens RC","The genesis of high-throughput structure-based drug discovery using protein crystallography.","Current Opinion in Chemical Biology","2002","6(5)","704-10","JCSG",""
"1298","12409628","method","McPhillips TM, McPhillips SE, Chiu HJ, Cohen AE, Deacon AM, Ellis PJ, Garman E, Gonzalez A, Sauter NK, Phizackerley RP, Soltis SM, Kuhn P","Blu-Ice and the Distributed Control System: software for data acquisition and instrument control at macromolecular crystallography beamlines.","Journal of Synchrotron Radiation","2002","9(Pt 6)","401-6","JCSG",""
"1286","12393922","method","Spraggon G, Lesley SA, Kreusch A, Priestle JP","Computational analysis of crystallization trials.","Acta Crystallographica Section D: Biological Crystallography","2002","58(Pt 11)","1915-23","JCSG",""
"1327","12377129","method","Todd AE, Orengo CA, Thornton JM","Sequence and structural differences between enzyme and nonenzyme homologs.","Structure","2002","10(10)","1435-51","MCSG",""
"1303","12351853","method","Krupka HI, Rupp B, Segelke BW, Lekin TP, Wright D, Wu HC, Todd P, Azarani A","The high-speed Hydra-Plus-One system for automated high-throughput protein crystallography.","Acta Crystallographica Section D: Biological Crystallography","2002","58(Pt 10 Pt 1)","1523-6","TB",""
"1304","12351851","method","Rupp B, Segelke BW, Krupka HI, Lekin T, Schäfer J, Zemla A, Toppani D, Snell G, Earnest T","The TB structural genomics consortium crystallization facility: towards automation from protein to electron density.","Acta Crystallographica Section D: Biological Crystallography","2002","58(Pt 10 Pt 1)","1514-8","TB",""
"440","12350343","method","Edwards  AM, Kus  B, Jansen  R, Greenbaum  D, Greenblatt  J, Gerstein  M","Bridging structural biology and genomics: assessing protein interaction data with known complexes.","Trends in Genetics","2002","18","529-36","NESG",""
"430","12215414","method","Liu  J, Tan  H, Rost  B","Loopy proteins appear conserved in evolution.","Journal of Molecular Biology","2002","322","53-64","NESG",""
"1305","12205510","method","Pédelacq JD, Piltch E, Liong EC, Berendzen J, Kim CY, Rho BS, Park MS, Terwilliger TC, Waldo GS","Engineering soluble proteins for structural genomics.","Nature Biotechnology","2002","20(9)","927-32","TB",""
"1368","12194989","method","Burley SK, Bonanno JB","Structuring the universe of proteins.","Annual Review of Genomics and Human Genetics","2002","3(12)","243-62","NYSGXRC",""
"1279","12193646","method","Lesley SA, Kuhn P, Godzik A, Deacon AM, Mathews I, Kreusch A, Spraggon G, Klock HE, McMullan D, Shin T, Vincent J, Robb A, Brinen LS, Miller MD, McPhillips TM, Miller MA, Scheibe D, Canaves JM, Guda C, Jaroszewski L, Selby TL, Elsliger MA, Wooley J, Taylor SS, Hodgson KO, Wilson IA, Schultz PG, Stevens RC","Structural genomics of the Thermotoga maritima proteome implemented in a high-throughput structure determination pipeline.","Proceedings of the National Academy of Sciences of the United States of America","2002","99(18)","11664-9","JCSG",""
"1339","12169534","method","Nair R, Rost B","Inferring sub-cellular localization through automated lexical analysis.","Bioinformatics","2002","18 Suppl 1(31)","S78-86","NESG",""
"1326","12151227","method","Todd AE, Orengo CA, Thornton JM","Plasticity of enzyme active sites.","Trends in Biochemical Sciences","2002","27(8)","419-26","MCSG",""
"435","12127462","method","Rost  B","Did evolution leap to create the protein universe?","Current Opinion in Structural Biology","2002","12","409-16","NESG",""
"1367","12127459","method","Burley SK, Bonanno JB","Structural genomics of proteins from conserved biochemical pathways and processes.","Current Opinion in Structural Biology","2002","12(3)","383-91","NYSGXRC",""
"1281","12124259","method","Kundu S, Melton JS, Sorensen DC, Phillips GN","Dynamics of proteins in crystals: comparison of experiment with simple models.","Biophysical Journal","2002","83(2)","723-32","CESG",""
"466","12117789","method","Liu  J, Rost  B","Target space for structural genomics revisited.","Bioinformatics","2002","18","922-33","NESG",""
"1312","12071693","method","Stols L, Gu M, Dieckman L, Raffen R, Collart FR, Donnelly MI","A new vector for high-throughput, ligation-independent cloning encoding a tobacco etch virus protease cleavage site.","Protein Expression and Purification","2002","25(1)","8-15","MCSG",""
"1325","12071692","method","Dieckman L, Gu M, Stols L, Donnelly MI, Collart FR","High throughput methods for gene cloning and expression.","Protein Expression and Purification","2002","25(1)","1-7","MCSG",""
"1370","12069626","method","Fiser A, Feig M, Brooks CL, Sali A","Evolution and physics in comparative protein structure modeling.","Accounts of Chemical Research","2002","35(6)","413-21","NYSGXRC",""
"1331","12060747","method","Szyperski T, Yeh DC, Sukumaran DK, Moseley HN, Montelione GT","Reduced-dimensionality NMR spectroscopy for high-throughput protein resonance assignment.","Proceedings of the National Academy of Sciences of the United States of America","2002","99(12)","8009-14","NESG",""
"1314","12060703","method","Smith HR, Heusel JW, Mehta IK, Kim S, Dorner BG, Naidenko OV, Iizuka K, Furukawa H, Beckman DL, Pingel JT, Scalzo AA, Fremont DH, Yokoyama WM","Recognition of a virus-encoded ligand by a natural killer cell activation receptor.","Proceedings of the National Academy of Sciences of the United States of America","2002","99(13)","8826-31","MCSG",""
"436","12051862","method","Rost  B","Enzyme function less conserved than anticipated.","Journal of Molecular Biology","2002","318","595-608","NESG",""
"1293","12032555","method","Fogh R, Ionides J, Ulrich E, Boucher W, Vranken W, Linge JP, Habeck M, Rieping W, Bhat TN, Westbrook J, Henrick K, Gilliland G, Berman H, Thornton J, Nilges M, Markley J, Laue E","The CCPN project: an interim report on a data model for the NMR community.","Nature Structural & Molecular Biology","2002","9(6)","416-8","CESG",""
"441","12011452","other","Soccio RE, Adams RM, Romanowski MJ, Sehayek E, Burley SK, Breslow JL","The cholesterol-regulated StarD4 gene encodes a StAR-related lipid transfer protein with two closely related homologues, StarD5 and StarD6.","Proceedings of the National Academy of Sciences of the United States of America","2002","99(10)","6943-8","NYSGXRC",""
"1290","12005441","method","Marti-Renom MA, Madhusudhan MS, Fiser A, Rost B, Sali A","Reliability of assessment of protein structure prediction methods.","Structure","2002","10(3)","435-40","NESGC+NYSGXRC",""
"442","11956218","other","Yang Y, Li L, Wong GW, Krilis SA, Madhusudhan MS, Sali A, Stevens RL","RasGRP4, a new mast cell-restricted Ras guanine nucleotide-releasing protein with calcium- and diacylglycerol-binding motifs. Identification of defective variants of this signaling protein in asthma, mastocytosis, and mast cell leukemia patients and demonstration of the importance of RasGRP4 in mast cell development and function.","Journal of Biological Chemistry","2002","277(28)","25756-74","NYSGXRC",""
"377","11933060","method","Hegyi  H, Lin  J, Greenbaum  D, Gerstein  M","Structural genomics analysis: characteristics of atypical, common, and horizontally transferred folds.","Proteins","2002","47","126-41","NESG",""
"1297","11917152","method","Lesley SA, Graziano J, Cho CY, Knuth MW, Klock HE","Gene expression response to misfolded protein as a screen for soluble recombinant protein.","Protein Engineering, Design and Selection","2002","15(2)","153-60","JCSG",""
"1287","11904420","method","Zhang C, Hou J, Kim SH","Fold prediction of helical proteins using torsion angle dynamics and predicted restraints.","Proceedings of the National Academy of Sciences of the United States of America","2002","99(6)","3581-5","BSGC",""
"1310","11891275","method","Facchetti F, Cella M, Festa S, Fremont DH, Colonna M","An unusual Fc receptor-related protein expressed in human centroblasts.","Proceedings of the National Academy of Sciences of the United States of America","2002","99(6)","3776-81","MCSG",""
"1308","11875040","method","Buchan DW, Shepherd AJ, Lee D, Pearl FM, Rison SC, Thornton JM, Orengo CA","Gene3D: structural assignment for whole genes and genomes using the CATH domain structure database.","Genome Research","2002","12(3)","503-14","MCSG",""
"438","11864367","method","Liu  Y, Luscombe  NM, Alexandrov  V, Bertone  P, Harrison  P, Zhang  Z, Gerstein  M","Structural genomics: a new era for pharmaceutical research.","Genome Biology","2002","3","REPORTS4004","NESG",""
"1333","11854485","method","Yee A, Chang X, Pineda-Lucena A, Wu B, Semesi A, Le B, Ramelot T, Lee GM, Bhattacharyya S, Gutierrez P, Denisov A, Lee CH, Cort JR, Kozlov G, Liao J, Finak G, Chen L, Wishart D, Lee W, McIntosh LP, Gehring K, Kennedy MA, Edwards AM, Arrowsmith CH","An NMR approach to structural proteomics.","Proceedings of the National Academy of Sciences of the United States of America","2002","99(4)","1825-30","NESG","1ilo"
"463","11839303","method","Andersen  CA, Palmer  AG, Brunak  S, Rost  B","Continuum secondary structure captures protein flexibility.","Structure","2002","10","175-84","NESG",""
"1282","11839300","method","Rayment I","Small-scale batch crystallization of proteins revisited: an underutilized way to grow large protein crystals.","Structure","2002","10(2)","147-51","CESG",""
"1353","11836232","method","Stuart AC, Ilyin VA, Sali A","LigBase: a database of families of aligned ligand binding sites in known protein sequences and structures.","Bioinformatics","2002","18(1)","200-1","NYSGXRC",""
"1313","11807252","method","Pavelcik F, Zelinka J, Otwinowski Z","Methodology and applications of automatic electron-density map interpretation by six-dimensional rotational and translational search for molecular fragments.","Acta Crystallographica Section D: Biological Crystallography","2002","58(Pt 2)","275-83","MCSG",""
"444","11790853","method","Melo F, Sánchez R, Sali A","Statistical potentials for fold assessment.","Protein Science","2002","11(2)","430-48","NYSGXRC",""
"1311","11790833","method","Pearl FM, Lee D, Bray JE, Buchan DW, Shepherd AJ, Orengo CA","The CATH extended protein-family database: providing structural annotations for genome sequences.","Protein Science","2002","11(2)","233-44","MCSG",""
"1309","11788987","method","Orengo CA, Bray JE, Buchan DW, Harrison A, Lee D, Pearl FM, Sillitoe I, Todd AE, Thornton JM","The CATH protein family database: a resource for structural and functional annotation of genomes.","Proteomics","2002","2(1)","11-21","MCSG",""
"443","11786630","method","Gerstein  M, Lan  N, Jansen  R","Proteomics. Integrating interactomes.","Science","2002","295","284-7","NESG",""
"1288","11752765","method","Grosse-Kunstleve RW, Adams PD","Algorithms for deriving crystallographic space-group information. II. Treatment of special positions.","Acta Crystallographica Section A: Foundations of Crystallography","2002","58(Pt 1)","60-5","BSGC",""
"1295","11752310","method","Chandonia JM, Walker NS, Conte LL, Koehl P, Levitt M, Brenner SE","ASTRAL compendium enhancements.","Nucleic Acids Research","2002","30(1)","260-3","BSGC",""
"1352","11752309","method","Pieper U, Eswar N, Stuart AC, Ilyin VA, Sali A","MODBASE, a database of annotated comparative protein structure models.","Nucleic Acids Research","2002","30(1)","255-9","NYSGXRC",""
"1330","","method","Sali A, Marti-Renom MA, Madhusudhan MS, Fiser A, Rost B","Reply to Moult et al","Structure","2002","10","292-293","NYSGXRC",""
"1372","","method","Arangarasan R, Phillips GN","Modular approach of multimodal integration in a virtual environment","Books and Proceedings","2002","","","CESG",""
"1329","","method","Busso D, Kim R, Kim SH","Screening for soluble expression of recombinant proteins using the RTS 100 HY in a 96-well format","Biochemica","2002","4","33-5","BSGC",""
"462","","other","Szyperski T","Strukturelle Genomik","Nachrichten aus der Chemie","2002","50","1128-31","NESG",""
"1278","","method","Santarsiero BD, Yegian DT, Lee CC, Spraggon G, Gu J, Scheibe D, Uber DC, Cornell EW, Nordmeyer RA, Kolbe WF, Jin J, Jones AL, Jaklevik JM, Schultz PG, Stevens RC","An approach to rapid protein crystallization using nanodroplets","Journal of Applied Crystallography","2002","35","278-281","JCSG",""
"1375","","method","Sauder JM, Rutter ME, Bain K, Rooney I, Gheyi T, Atwell S, Thompson DA, Emtage S and Burley SK","Comparative protein structure prediction","Books and Proceedings","2002","","1-22","NYSGXRC",""
"1376","","method","Grosse-Kunstleve RW, Sauter NK, Moriarty NW","The Computational Crystallography Toolbox: crystallographic algorithms in a reusable software framework","Journal of Applied Crystallography","2002","35","126-36","BSGC",""
"363","","other","Kantardjieff K, Rupp B","Crystallography quo vadis","Zeitschrift fur Kristallographie","2002","217(8)","328-329","TB",""
"487","","other","Lan N, Jansen R, Gerstein M","Toward a systematic definition of protein function that scales to the genome level: Defining function in terms of interactions","Proceedings of the IEEE","2002","90","1848-58","NESG",""
"373","","method","Otwinowski Z, Minor W","Denzo and Scalepack","International Tables for Crystallography","2001","F","226-235","MCSG",""
"1415","11791222","method","Gunther CS, Gaasterland T","Characterizing the relationship between protein-fusion and gene co-expression.","Genome Informatics. International Conference on Genome Informatics","2001","12(Pt 2)","34-43","NYSGXRC",""
"365","11738594","other","Corbett KD, Alber T","The many faces of Ras: recognition of small GTP-binding proteins.","Trends in Biochemical Sciences","2001","26(12)","710-6","TB",""
"1403","11717517","method","Vysotski ES, Liu ZJ, Rose J, Wang BC, Lee J","Preparation and X-ray crystallographic analysis of recombinant obelin crystals diffracting to beyond 1.1 A.","Acta Crystallographica Section D: Biological Crystallography","2001","57(Pt 12)","1919-21","SECSG",""
"468","11717420","method","Montelione  GT","Structural genomics: an approach to the protein folding problem.","Proceedings of the National Academy of Sciences of the United States of America","2001","98","13488-9","NESG",""
"1405","11716736","method","Tian F, Valafar H, Prestegard JH","A dipolar coupling based strategy for simultaneous resonance assignment and structure determination of protein backbones.","Journal of the American Chemical Society","2001","123(47)","11791-6","SECSG",""
"446","11701127","other","Spahn CM, Beckmann R, Eswar N, Penczek PA, Sali A, Blobel G, Frank J","Structure of the 80S ribosome from Saccharomyces cerevisiae--tRNA-ribosome and subunit-subunit interactions.","Cell","2001","107(3)","373-86","NYSGXRC",""
"450","11701126","other","Beckmann R, Spahn CM, Eswar N, Helmers J, Penczek PA, Sali A, Frank J, Blobel G","Architecture of the protein-conducting channel associated with the translating 80S ribosome.","Cell","2001","107(3)","361-72","NYSGXRC",""
"1423","11604875","method","Kulikowski CA, Muchnik I, Yun HJ, Dayanik AA, Zhang D, Song Y, Montelione GT","Protein structural domain parsing by consensus reasoning over multiple knowledge sources and methods.","MEDINFO 2001: Proceedings of the 10th World Congress on Medical Informatics","2001","84","965-9","NESG",""
"1402","11601976","method","Schubot FD, Kataeva IA, Blum DL, Shah AK, Ljungdahl LG, Rose JP, Wang BC","Structural basis for the substrate specificity of the feruloyl esterase domain of the cellulosomal xylanase Z from Clostridium thermocellum.","Biochemistry","2001","40(42)","12524-32","SECSG","1jjf"
"448","11591640","method","Hegyi  H, Gerstein  M","Annotation transfer for genomics: measuring functional divergence in multi-domain proteins.","Genome Research","2001","11","1632-40","NESG",""
"1408","11588249","method","Stevens RC, Yokoyama S, Wilson IA","Global efforts in structural genomics.","Science","2001","294(5540)","89-92","JCSG",""
"1420","11574054","method","Serres MH, Gopal S, Nahum LA, Liang P, Gaasterland T, Riley M","A functional update of the Escherichia coli K-12 genome.","Genome Biology","2001","2(9)","RESEARCH0035","NYSGXRC",""
"467","11567088","method","Liu  J, Rost  B","Comparing function and structure between entire proteomes.","Protein Science","2001","10","1970-9","NESG",""
"1364","11524379","method","Marti-Renom MA, Ilyin VA, Sali A","DBAli: a database of protein structure alignments.","Bioinformatics","2001","17(8)","746-7","NYSGXRC",""
"1406","11522917","method","Grigoriev IV, Zhang C, Kim SH","Sequence-based detection of distantly related proteins with the same fold.","Protein Engineering, Design and Selection","2001","14(7)","455-8","BSGC",""
"1390","11483004","method","Donnelly MI, Stevens PW, Stols L, Su SX, Tollaksen S, Giometti C, Joachimiak A","Expression of a highly toxic protein, Bax, in Escherichia coli by attachment of a leader peptide derived from the GroES cochaperone.","Protein Expression and Purification","2001","22(3)","422-9","MCSG",""
"1407","11463918","method","Stevens RC, Wilson IA","Tech.Sight. Industrializing structural biology.","Science","2001","293(5529)","519-20","JCSG",""
"1382","11462827","method","Moseley HN, Monleon D, Montelione GT","Automatic determination of protein backbone resonance assignments from triple resonance nuclear magnetic resonance data.","Methods in Enzymology","2001","339(13)","91-108","NESG",""
"1404","11437590","method","Lesley SA","High-throughput proteomics: protein expression and purification in the postgenomic world.","Protein Expression and Purification","2001","22(2)","159-64","JCSG",""
"1381","11433035","method","Bertone P, Kluger Y, Lan N, Zheng D, Christendat D, Yee A, Edwards AM, Arrowsmith CH, Montelione GT, Gerstein M","SPINE: an integrated tracking database and data mining approach for identifying feasible targets in high-throughput structural proteomics.","Nucleic Acids Research","2001","29(13)","2884-98","NESG",""
"1388","11418770","method","Korolev S, Dementieva I, Sanishvili R, Minor W, Otwinowski Z, Joachimiak A","Using surface-bound rubidium ions for protein phasing.","Acta Crystallographica Section D: Biological Crystallography","2001","57(Pt 7)","1008-12","MCSG",""
"455","11406390","method","Gaasterland T, Oprea M","Whole-genome analysis: annotations and updates.","Current Opinion in Structural Biology","2001","11(3)","377-81","NYSGXRC",""
"1426","11373610","method","Sali A","Target practice.","Nature Structural & Molecular Biology","2001","8(6)","482-4","NYSGXRC",""
"1409","11292848","method","Qian J, Stenger B, Wilson CA, Lin J, Jansen R, Teichmann SA, Park J, Krebs WG, Yu H, Alexandrov V, Echols N, Gerstein M","PartsList: a web-based system for dynamically ranking protein folds based on disparate attributes, including whole-genome expression and interaction information.","Nucleic Acids Research","2001","29(8)","1750-64","NESG",""
"1410","11242120","method","Gopal S, Schroeder M, Pieper U, Sczyrba A, Aytekin-Kurban G, Bekiranov S, Fajardo JE, Eswar N, Sanchez R, Sali A, Gaasterland T","Homology-based annotation yields 1,042 new candidate genes in the Drosophila melanogaster genome.","Nature Genetics","2001","27(3)","337-40","NYSGXRC",""
"1411","11175726","method","Wigley WC, Stidham RD, Smith NM, Hunt JF, Thomas PJ","Protein solubility and folding monitored in vivo by structural complementation of a genetic marker protein.","Nature Biotechnology","2001","19(2)","131-6","NESG",""
"1391","11125098","method","Pearl FM, Martin N, Bray JE, Buchan DW, Harrison AP, Lee D, Reeves GA, Shepherd AJ, Sillitoe I, Todd AE, Thornton JM, Orengo CA","A rapid classification protocol for the CATH Domain Database to support structural genomics.","Nucleic Acids Research","2001","29(1)","223-7","MCSG",""
"1389","11125097","method","Laskowski RA","PDBsum: summaries and analyses of PDB structures.","Nucleic Acids Research","2001","29(1)","221-2","MCSG",""
"1401","","method","Luft J, Wolfley J, Jurisica I, Glasgow J, Fortier S, DeTitta GT","Macromolecular Crystallization in a High Throughput Laboratory - The Search Phase","Journal of Crystal Growth","2001","232","591-595","SGPP+NESG",""
"449","","method","Jurisica I, Rogers P, Glasgow J, Fortier S, Luft J, Wolfley J, Bianca M, Weeks D, DeTitta GT","Intelligent decision support for protein crystal growth","IBM Systems Journal","2001","40","394-409","NESG",""
"1416","","method","Jurisica I, Rogers P, Glasgow J, Collins R, Wolfley J, Luft J, DeTitta GT","Improving objectivity and scalability in protein 
crystallization","IEEE Intelligent Systems","2001","16(6)","26-34","NESG",""
"1413","","method","Jurisica I, Rogers P, Glasgow J, Fortier S, Collins R, Wolfley J, Luft J, DeTitta GT","High throughput macromolecular crystallization: An application of case-based reasoning and data mining","Books and Proceedings","2001","325","9-14","NESG",""
"1392","","method","Segelke BW","Efficiency analysis of sampling protocols used in protein crystallization screening","Journal of Crystal Growth","2001","232","553-562","TB",""
"1424","","method","Goodwill KE, Tennant MG, Stevens RC","High-throughput X-ray crystallography for structure-based drug design","Drug Discovery Today","2001","6","S113-8","JCSG",""
"1412","","method","Jurisica I, Rogers P, Glasgow J, Fortier S, Luft J, Bianca D, DeTitta GT","Image-feature extraction for protein crystallization: Integrating image analysis and case-based reasoning","Books and Proceedings","2001","","73-80","NESG",""
"288","11116192","method","Hendrickson  WA","Synchrotron crystallography.","Trends in Biochemical Sciences","2000","25","637-43","NESG",""
"1452","11114510","method","Erlandsen H, Abola EE, Stevens RC","Combining structural genomics and enzymology: completing the picture in metabolic pathways and enzyme active sites.","Current Opinion in Structural Biology","2000","10(6)","719-30","JCSG",""
"1454","11104007","method","Sánchez R, Pieper U, Melo F, Eswar N, Martí-Renom MA, Madhusudhan MS, Mirković N, Sali A","Protein structure modeling for structural genomics.","Nature Structural & Molecular Biology","2000","7 Suppl(41)","986-90","NYSGXRC",""
"470","11104006","method","Montelione  GT, Zheng  D, Huang  YJ, Gunsalus  KC, Szyperski  T","Protein NMR spectroscopy in structural genomics.","Nature Structural & Molecular Biology","2000","7 Suppl","982-5","NESG",""
"1444","11104004","method","Abola E, Kuhn P, Earnest T, Stevens RC","Automation of X-ray crystallography.","Nature Structural & Molecular Biology","2000","7 Suppl(20)","973-7","JCSG",""
"453","11104003","method","Edwards  AM, Arrowsmith  CH, Christendat  D, Dharamsi  A, Friesen  JD, Greenblatt  JF, Vedadi  M","Protein production: feeding the crystallographers and NMR spectroscopists.","Nature Structural & Molecular Biology","2000","7 Suppl","970-2","NESG",""
"1433","11103991","method","Burley SK","An overview of structural genomics.","Nature Structural & Molecular Biology","2000","7 Suppl(5)","932-4","NYSGXRC",""
"469","11075910","method","Das  R, Hegyi  H, Gerstein  M","Genome analyses of spirochetes: a study of the protein structures, functions and metabolic pathways in Treponema pallidum and Borrelia burgdorferi.","Journal of Molecular Microbiology and Biotechnology","2000","2","387-92","NESG",""
"456","11063779","method","Christendat  D, Yee  A, Dharamsi  A, Kluger  Y, Gerstein  M, Arrowsmith  CH, Edwards  AM","Structural proteomics: prospects for high throughput sample preparation.","Progress in Biophysics & Molecular Biology","2000","73","339-45","NESG",""
"451","11042457","method","Gerstein  M, Jansen  R","The current excitement in bioinformatics-analysis of whole-genome expression data: how does it relate to protein structure and function?","Current Opinion in Structural Biology","2000","10","574-84","NESG",""
"1456","11042454","method","Stevens RC","High-throughput protein crystallization.","Current Opinion in Structural Biology","2000","10(5)","558-63","JCSG",""
"459","11029067","method","Naylor  GJ, Gerstein  M","Measuring shifts in function and evolutionary opportunity using variability profiles: a case study of the globins.","Journal of Molecular Evolution","2000","51","223-33","NESG",""
"1432","11017201","method","Christendat D, Yee A, Dharamsi A, Kluger Y, Savchenko A, Cort JR, Booth V, Mackereth CD, Saridakis V, Ekiel I, Kozlov G, Maxwell KL, Wu N, McIntosh LP, Gehring K, Kennedy MA, Davidson AR, Pai EF, Gerstein M, Edwards AM, Arrowsmith CH","Structural proteomics of an archaeon.","Nature Structural & Molecular Biology","2000","7(10)","903-9","NESG","1dw7"
"1440","10986469","method","Stevens RC","Design of high-throughput methods of protein production for structural biology.","Structure","2000","8(9)","R177-85","JCSG",""
"452","10966805","method","Drawid  A, Gerstein  M","A Bayesian system integrating expression data with sequence patterns for localizing proteins: comprehensive application to the yeast genome.","Journal of Molecular Biology","2000","301","1059-75","NESG",""
"454","10931922","method","Balasubramanian  S, Schneider  T, Gerstein  M, Regan  L","Proteomics of Mycoplasma genitalium: identification and characterization of unannotated and atypical proteins in a small model genome.","Nucleic Acids Research","2000","28","3075-82","NESG",""
"1453","10888612","method","van Berkel V, Barrett J, Tiffany HL, Fremont DH, Murphy PM, McFadden G, Speck SH, Virgin HW IV","Identification of a gammaherpesvirus selective chemokine binding protein that inhibits chemokine action.","Journal of Virology","2000","74(15)","6741-7","MCSG",""
"461","10860994","other","Jin S, Martinek S, Joo WS, Wortman JR, Mirkovic N, Sali A, Yandell MD, Pavletich NP, Young MW, Levine AJ","Identification and characterization of a p53 homologue in Drosophila melanogaster.","Proceedings of the National Academy of Sciences of the United States of America","2000","97(13)","7301-6","NYSGXRC",""
"460","10854412","method","Lin  J, Gerstein  M","Whole-genome trees based on the occurrence of folds and orthologs: implications for comparing genomes on different levels.","Genome Research","2000","10","808-18","NESG",""
"1457","10851198","method","Kim SH","Structural genomics of microbes: an objective.","Current Opinion in Structural Biology","2000","10(3)","380-3","BSGC",""
"1428","10843859","method","Zhang C, Kim SH","The anatomy of protein beta-sheet topology.","Journal of Molecular Biology","2000","299(4)","1075-89","BSGC",""
"1449","10801499","method","Minor W, Tomchick D, Otwinowski Z","Strategies for macromolecular synchrotron crystallography.","Structure","2000","8(5)","R105-10","MCSG",""
"1459","10722686","method","Du X, Frei H, Kim SH","The mechanism of GTP hydrolysis by Ras probed by Fourier transform infrared spectroscopy.","Journal of Biological Chemistry","2000","275(12)","8492-500","BSGC",""
"289","10684945","method","Jansen  R, Gerstein  M","Analysis of the yeast transcriptome with structural and functional categories: characterizing highly expressed proteins.","Nucleic Acids Research","2000","28","1481-8","NESG",""
"1462","10588703","method","Grigoriev IV, Kim SH","Detection of protein fold similarity based on correlation of amino acid properties.","Proceedings of the National Academy of Sciences of the United States of America","1999","96(25)","14318-23","BSGC",""