Software Open Access
Thomas Guillerme; Kevin Healy
<?xml version='1.0' encoding='UTF-8'?> <record xmlns="http://www.loc.gov/MARC21/slim"> <leader>00000nmm##2200000uu#4500</leader> <controlfield tag="005">20200412132900.0</controlfield> <controlfield tag="001">806785</controlfield> <datafield tag="700" ind1=" " ind2=" "> <subfield code="a">Kevin Healy</subfield> </datafield> <datafield tag="856" ind1="4" ind2=" "> <subfield code="s">6837192</subfield> <subfield code="z">md5:6d66f5d85c92a0adac4f3b9a970aca01</subfield> <subfield code="u">https://zenodo.org/record/806785/files/TGuillerme/mulTree-v1.2.7.zip</subfield> </datafield> <datafield tag="542" ind1=" " ind2=" "> <subfield code="l">open</subfield> </datafield> <datafield tag="260" ind1=" " ind2=" "> <subfield code="c">2017-06-12</subfield> </datafield> <datafield tag="909" ind1="C" ind2="O"> <subfield code="p">software</subfield> <subfield code="o">oai:zenodo.org:806785</subfield> </datafield> <datafield tag="100" ind1=" " ind2=" "> <subfield code="u">Imperial College London</subfield> <subfield code="a">Thomas Guillerme</subfield> </datafield> <datafield tag="245" ind1=" " ind2=" "> <subfield code="a">TGuillerme/mulTree: v1.2.7</subfield> </datafield> <datafield tag="540" ind1=" " ind2=" "> <subfield code="a">Other (Open)</subfield> </datafield> <datafield tag="650" ind1="1" ind2="7"> <subfield code="a">cc-by</subfield> <subfield code="2">opendefinition.org</subfield> </datafield> <datafield tag="520" ind1=" " ind2=" "> <subfield code="a"><ul> <li>2017/06/12 - <strong>v1.2.7</strong><ul> <li>Minor fix to <code>clean.data</code> to properly deal with data frames.</li> </ul> </li> <li>2017/05/15 - v1.2.6<ul> <li>Removed <code>caper</code> dependencies.</li> <li>Minor fixes to code internal documentation.</li> <li><code>coda::gelman.diag</code> in <code>mulTree</code> now only outputs a warning rather than a stop message</li> <li>Allows R-structure's standrad multi-response model in <code>as.mulTree</code> (e.g. <code>rand.terms = ~taxa + specimen + us(trait):observation</code>).</li> </ul> </li> <li>2017/01/09 - v1.2.5<ul> <li>Added minor sanitising function to <code>mulTree</code> the formula now has to match the data set column names.</li> <li>Fixed a bug with the <code>parallel</code> option in <code>mulTree</code>: only one cluster is now generated at the start of the function rather than one at each iteration.</li> <li>Fixed a minor bug with <code>as.mulTree</code>: the random terms formula's environment is not anymore exported by the function when set up by default.</li> </ul> </li> <li>2016/08/10 - v1.2.4<ul> <li>Fixed a bug in the convergence test where the convergence was not ran on the VCV matrix.</li> <li>Models memory management is now safer and is done only out of R environment leading to minor speed improvements in <code>mulTree</code> function.</li> <li>Some errors are now more verbose in <code>mulTree</code> and <code>summary.mulTree</code>.</li> <li>Fixed bug with <code>plot.mulTree</code> that didn't allow to plot more than 5 parameters.</li> </ul> </li> <li>2016/07/06 - v1.2.3<ul> <li>External functions are now properly imported via the <code>NAMESPACE</code>.</li> <li>New phylogenetic analysis markdown vignette!</li> </ul> </li> <li>2016/02/19 - v1.2.2<ul> <li>major bug fix in <code>mulTree</code> where models saved out of <code>R</code> environment where accumulating data from former models (now fixed: each model saved out of the <code>R</code> environment contains only data for the target model).</li> </ul> </li> <li>2016/01/25 - v1.2.1<ul> <li>minor bug fix in <code>summary.mulTree</code> that can now deal with multiple hdr for each probabilities.</li> <li>minor bug fix in <code>plot.mulTree</code> with the number of terms used</li> </ul> </li> </ul></subfield> </datafield> <datafield tag="773" ind1=" " ind2=" "> <subfield code="n">url</subfield> <subfield code="i">isSupplementTo</subfield> <subfield code="a">https://github.com/TGuillerme/mulTree/tree/v1.2.7</subfield> </datafield> <datafield tag="773" ind1=" " ind2=" "> <subfield code="n">doi</subfield> <subfield code="i">isVersionOf</subfield> <subfield code="a">10.5281/zenodo.593013</subfield> </datafield> <datafield tag="024" ind1=" " ind2=" "> <subfield code="a">10.5281/zenodo.806785</subfield> <subfield code="2">doi</subfield> </datafield> <datafield tag="980" ind1=" " ind2=" "> <subfield code="a">software</subfield> </datafield> </record>
All versions | This version | |
---|---|---|
Views | 608 | 33 |
Downloads | 42 | 1 |
Data volume | 280.5 MB | 6.8 MB |
Unique views | 547 | 31 |
Unique downloads | 37 | 1 |