June 12, 2017 Software Open Access

Thomas Guillerme; Kevin Healy

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    <subfield code="a">&lt;ul&gt;
&lt;li&gt;2017/06/12 - &lt;strong&gt;v1.2.7&lt;/strong&gt;&lt;ul&gt;
&lt;li&gt;Minor fix to &lt;code&gt;clean.data&lt;/code&gt; to properly deal with data frames.&lt;/li&gt;
&lt;/ul&gt;
&lt;/li&gt;
&lt;li&gt;2017/05/15 - v1.2.6&lt;ul&gt;
&lt;li&gt;Removed &lt;code&gt;caper&lt;/code&gt; dependencies.&lt;/li&gt;
&lt;li&gt;Minor fixes to code internal documentation.&lt;/li&gt;
&lt;li&gt;&lt;code&gt;coda::gelman.diag&lt;/code&gt; in &lt;code&gt;mulTree&lt;/code&gt; now only outputs a warning rather than a stop message&lt;/li&gt;
&lt;li&gt;Allows R-structure's standrad multi-response model in &lt;code&gt;as.mulTree&lt;/code&gt; (e.g. &lt;code&gt;rand.terms  = ~taxa + specimen + us(trait):observation&lt;/code&gt;).&lt;/li&gt;
&lt;/ul&gt;
&lt;/li&gt;
&lt;li&gt;2017/01/09 - v1.2.5&lt;ul&gt;
&lt;li&gt;Added minor sanitising function to &lt;code&gt;mulTree&lt;/code&gt; the formula now has to match the data set column names.&lt;/li&gt;
&lt;li&gt;Fixed a bug with the &lt;code&gt;parallel&lt;/code&gt; option in &lt;code&gt;mulTree&lt;/code&gt;: only one cluster is now generated at the start of the function rather than one at each iteration.&lt;/li&gt;
&lt;li&gt;Fixed a minor bug with &lt;code&gt;as.mulTree&lt;/code&gt;: the random terms formula's environment is not anymore exported by the function when set up by default.&lt;/li&gt;
&lt;/ul&gt;
&lt;/li&gt;
&lt;li&gt;2016/08/10 - v1.2.4&lt;ul&gt;
&lt;li&gt;Fixed a bug in the convergence test where the convergence was not ran on the VCV matrix.&lt;/li&gt;
&lt;li&gt;Models memory management is now safer and is done only out of R environment leading to minor speed improvements in &lt;code&gt;mulTree&lt;/code&gt; function.&lt;/li&gt;
&lt;li&gt;Some errors are now more verbose in &lt;code&gt;mulTree&lt;/code&gt; and &lt;code&gt;summary.mulTree&lt;/code&gt;.&lt;/li&gt;
&lt;li&gt;Fixed bug with &lt;code&gt;plot.mulTree&lt;/code&gt; that didn't allow to plot more than 5 parameters.&lt;/li&gt;
&lt;/ul&gt;
&lt;/li&gt;
&lt;li&gt;2016/07/06 - v1.2.3&lt;ul&gt;
&lt;li&gt;External functions are now properly imported via the &lt;code&gt;NAMESPACE&lt;/code&gt;.&lt;/li&gt;
&lt;li&gt;New phylogenetic analysis markdown vignette!&lt;/li&gt;
&lt;/ul&gt;
&lt;/li&gt;
&lt;li&gt;2016/02/19 - v1.2.2&lt;ul&gt;
&lt;li&gt;major bug fix in &lt;code&gt;mulTree&lt;/code&gt; where models saved out of &lt;code&gt;R&lt;/code&gt; environment where accumulating data from former models (now fixed: each model saved out of the &lt;code&gt;R&lt;/code&gt; environment contains only data for the target model).&lt;/li&gt;
&lt;/ul&gt;
&lt;/li&gt;
&lt;li&gt;2016/01/25 - v1.2.1&lt;ul&gt;
&lt;li&gt;minor bug fix in &lt;code&gt;summary.mulTree&lt;/code&gt; that can now deal with multiple hdr for each probabilities.&lt;/li&gt;
&lt;li&gt;minor bug fix in &lt;code&gt;plot.mulTree&lt;/code&gt; with the number of terms used&lt;/li&gt;
&lt;/ul&gt;
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