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TGuillerme/mulTree: v1.2.7

Thomas Guillerme; Kevin Healy


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  <dc:creator>Thomas Guillerme</dc:creator>
  <dc:creator>Kevin Healy</dc:creator>
  <dc:date>2017-06-12</dc:date>
  <dc:description>
2017/06/12 - v1.2.7
Minor fix to clean.data to properly deal with data frames.


2017/05/15 - v1.2.6
Removed caper dependencies.
Minor fixes to code internal documentation.
coda::gelman.diag in mulTree now only outputs a warning rather than a stop message
Allows R-structure's standrad multi-response model in as.mulTree (e.g. rand.terms  = ~taxa + specimen + us(trait):observation).


2017/01/09 - v1.2.5
Added minor sanitising function to mulTree the formula now has to match the data set column names.
Fixed a bug with the parallel option in mulTree: only one cluster is now generated at the start of the function rather than one at each iteration.
Fixed a minor bug with as.mulTree: the random terms formula's environment is not anymore exported by the function when set up by default.


2016/08/10 - v1.2.4
Fixed a bug in the convergence test where the convergence was not ran on the VCV matrix.
Models memory management is now safer and is done only out of R environment leading to minor speed improvements in mulTree function.
Some errors are now more verbose in mulTree and summary.mulTree.
Fixed bug with plot.mulTree that didn't allow to plot more than 5 parameters.


2016/07/06 - v1.2.3
External functions are now properly imported via the NAMESPACE.
New phylogenetic analysis markdown vignette!


2016/02/19 - v1.2.2
major bug fix in mulTree where models saved out of R environment where accumulating data from former models (now fixed: each model saved out of the R environment contains only data for the target model).


2016/01/25 - v1.2.1
minor bug fix in summary.mulTree that can now deal with multiple hdr for each probabilities.
minor bug fix in plot.mulTree with the number of terms used


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  <dc:identifier>https://zenodo.org/record/806785</dc:identifier>
  <dc:identifier>10.5281/zenodo.806785</dc:identifier>
  <dc:identifier>oai:zenodo.org:806785</dc:identifier>
  <dc:relation>url:https://github.com/TGuillerme/mulTree/tree/v1.2.7</dc:relation>
  <dc:relation>doi:10.5281/zenodo.593013</dc:relation>
  <dc:rights>info:eu-repo/semantics/openAccess</dc:rights>
  <dc:title>TGuillerme/mulTree: v1.2.7</dc:title>
  <dc:type>info:eu-repo/semantics/other</dc:type>
  <dc:type>software</dc:type>
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