Software Open Access
Thomas Guillerme; Kevin Healy
<?xml version='1.0' encoding='utf-8'?> <resource xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns="http://datacite.org/schema/kernel-4" xsi:schemaLocation="http://datacite.org/schema/kernel-4 http://schema.datacite.org/meta/kernel-4.1/metadata.xsd"> <identifier identifierType="DOI">10.5281/zenodo.806785</identifier> <creators> <creator> <creatorName>Thomas Guillerme</creatorName> <affiliation>Imperial College London</affiliation> </creator> <creator> <creatorName>Kevin Healy</creatorName> <affiliation></affiliation> </creator> </creators> <titles> <title>TGuillerme/mulTree: v1.2.7</title> </titles> <publisher>Zenodo</publisher> <publicationYear>2017</publicationYear> <dates> <date dateType="Issued">2017-06-12</date> </dates> <resourceType resourceTypeGeneral="Software"/> <alternateIdentifiers> <alternateIdentifier alternateIdentifierType="url">https://zenodo.org/record/806785</alternateIdentifier> </alternateIdentifiers> <relatedIdentifiers> <relatedIdentifier relatedIdentifierType="URL" relationType="IsSupplementTo">https://github.com/TGuillerme/mulTree/tree/v1.2.7</relatedIdentifier> <relatedIdentifier relatedIdentifierType="DOI" relationType="IsVersionOf">10.5281/zenodo.593013</relatedIdentifier> </relatedIdentifiers> <version>v1.2.7</version> <rightsList> <rights rightsURI="info:eu-repo/semantics/openAccess">Open Access</rights> </rightsList> <descriptions> <description descriptionType="Abstract"><ul> <li>2017/06/12 - <strong>v1.2.7</strong><ul> <li>Minor fix to <code>clean.data</code> to properly deal with data frames.</li> </ul> </li> <li>2017/05/15 - v1.2.6<ul> <li>Removed <code>caper</code> dependencies.</li> <li>Minor fixes to code internal documentation.</li> <li><code>coda::gelman.diag</code> in <code>mulTree</code> now only outputs a warning rather than a stop message</li> <li>Allows R-structure's standrad multi-response model in <code>as.mulTree</code> (e.g. <code>rand.terms = ~taxa + specimen + us(trait):observation</code>).</li> </ul> </li> <li>2017/01/09 - v1.2.5<ul> <li>Added minor sanitising function to <code>mulTree</code> the formula now has to match the data set column names.</li> <li>Fixed a bug with the <code>parallel</code> option in <code>mulTree</code>: only one cluster is now generated at the start of the function rather than one at each iteration.</li> <li>Fixed a minor bug with <code>as.mulTree</code>: the random terms formula's environment is not anymore exported by the function when set up by default.</li> </ul> </li> <li>2016/08/10 - v1.2.4<ul> <li>Fixed a bug in the convergence test where the convergence was not ran on the VCV matrix.</li> <li>Models memory management is now safer and is done only out of R environment leading to minor speed improvements in <code>mulTree</code> function.</li> <li>Some errors are now more verbose in <code>mulTree</code> and <code>summary.mulTree</code>.</li> <li>Fixed bug with <code>plot.mulTree</code> that didn't allow to plot more than 5 parameters.</li> </ul> </li> <li>2016/07/06 - v1.2.3<ul> <li>External functions are now properly imported via the <code>NAMESPACE</code>.</li> <li>New phylogenetic analysis markdown vignette!</li> </ul> </li> <li>2016/02/19 - v1.2.2<ul> <li>major bug fix in <code>mulTree</code> where models saved out of <code>R</code> environment where accumulating data from former models (now fixed: each model saved out of the <code>R</code> environment contains only data for the target model).</li> </ul> </li> <li>2016/01/25 - v1.2.1<ul> <li>minor bug fix in <code>summary.mulTree</code> that can now deal with multiple hdr for each probabilities.</li> <li>minor bug fix in <code>plot.mulTree</code> with the number of terms used</li> </ul> </li> </ul></description> </descriptions> </resource>
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