May 30, 2017 Software Open Access

Satrajit Ghosh; Yaroslav Halchenko; Jean-Baptiste Poline; David Kennedy

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    <subfield code="u">Dartmouth College, @Debian, @DataLad, @PyMVPA, @fail2ban</subfield>
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    <subfield code="a">&lt;p&gt;Addressed issues with paper version 1&lt;/p&gt;
&lt;ol&gt;
&lt;li&gt;docker image to repeat the analysis: docker pull repronim/simple_workflow:latest&lt;/li&gt;
&lt;li&gt;SimplePrep.sh script updated to check for requirements, install local environment without touching user's existing environment, and run small test with 1 subject. (with the option to run longer test by activating a different environment)&lt;/li&gt;
&lt;li&gt;working directory and prov files stored in the output folder&lt;/li&gt;
&lt;li&gt;docker output is now the reference &lt;/li&gt;
&lt;li&gt;circleci integration now uses docker to test and hence passes (since we run a 2 subject test on circleci, and the run workflow script allows one to specify number of participants, the check_output script allows ignoring missing participants)&lt;/li&gt;
&lt;li&gt;thanks to @yarikoptic, the docker generator can allow to adjust basic things like debian and fsl versions.&lt;/li&gt;
&lt;li&gt;cleaner environment.yml file that works on OSX and linux platforms&lt;/li&gt;
&lt;li&gt;README updated&lt;/li&gt;
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