Software Open Access

ReproNim/simple_workflow: Release 1.1.0

Satrajit Ghosh; Yaroslav Halchenko; Jean-Baptiste Poline; David Kennedy


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  <identifier identifierType="DOI">10.5281/zenodo.800758</identifier>
  <creators>
    <creator>
      <creatorName>Satrajit Ghosh</creatorName>
      <affiliation>MIT</affiliation>
    </creator>
    <creator>
      <creatorName>Yaroslav Halchenko</creatorName>
      <affiliation>Dartmouth College, @Debian, @DataLad, @PyMVPA, @fail2ban</affiliation>
    </creator>
    <creator>
      <creatorName>Jean-Baptiste Poline</creatorName>
      <affiliation></affiliation>
    </creator>
    <creator>
      <creatorName>David Kennedy</creatorName>
      <affiliation></affiliation>
    </creator>
  </creators>
  <titles>
    <title>ReproNim/simple_workflow: Release 1.1.0</title>
  </titles>
  <publisher>Zenodo</publisher>
  <publicationYear>2017</publicationYear>
  <dates>
    <date dateType="Issued">2017-05-30</date>
  </dates>
  <resourceType resourceTypeGeneral="Software"/>
  <alternateIdentifiers>
    <alternateIdentifier alternateIdentifierType="url">https://zenodo.org/record/800758</alternateIdentifier>
  </alternateIdentifiers>
  <relatedIdentifiers>
    <relatedIdentifier relatedIdentifierType="URL" relationType="IsSupplementTo">https://github.com/ReproNim/simple_workflow/tree/1.1.0</relatedIdentifier>
    <relatedIdentifier relatedIdentifierType="DOI" relationType="IsVersionOf">10.5281/zenodo.800757</relatedIdentifier>
  </relatedIdentifiers>
  <version>1.1.0</version>
  <rightsList>
    <rights rightsURI="info:eu-repo/semantics/openAccess">Open Access</rights>
  </rightsList>
  <descriptions>
    <description descriptionType="Abstract">&lt;p&gt;Addressed issues with paper version 1&lt;/p&gt;
&lt;ol&gt;
&lt;li&gt;docker image to repeat the analysis: docker pull repronim/simple_workflow:latest&lt;/li&gt;
&lt;li&gt;SimplePrep.sh script updated to check for requirements, install local environment without touching user's existing environment, and run small test with 1 subject. (with the option to run longer test by activating a different environment)&lt;/li&gt;
&lt;li&gt;working directory and prov files stored in the output folder&lt;/li&gt;
&lt;li&gt;docker output is now the reference &lt;/li&gt;
&lt;li&gt;circleci integration now uses docker to test and hence passes (since we run a 2 subject test on circleci, and the run workflow script allows one to specify number of participants, the check_output script allows ignoring missing participants)&lt;/li&gt;
&lt;li&gt;thanks to @yarikoptic, the docker generator can allow to adjust basic things like debian and fsl versions.&lt;/li&gt;
&lt;li&gt;cleaner environment.yml file that works on OSX and linux platforms&lt;/li&gt;
&lt;li&gt;README updated&lt;/li&gt;
&lt;/ol&gt;</description>
  </descriptions>
</resource>
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