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Phylogeography and evolutionary lineage diversity in the small-eared greater galago, Otolemur garnettii (Primates: Galagidae)
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Penna, Anna, Dillon, Rosemarie, Bearder, Simon K, Karlsson, Johan, Perkin, Andrew, Pozzi, Luca (2023): Phylogeography and evolutionary lineage diversity in the small-eared greater galago, Otolemur garnettii (Primates: Galagidae). Zoological Journal of the Linnean Society 198 (1): 131-148, DOI: 10.1093/zoolinnean/zlac079, URL: https://academic.oup.com/zoolinnean/article/198/1/131/6793748
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References
- REFERENCES de Abreu Jr EF, Pavan SE, Tsuchiya MTN, Wilson DE, Percequillo AR, Maldonado JE. 2020. Museomics of tree squirrels: a dense taxon sampling of mitogenomes reveals hidden diversity, phenotypic convergence, and the need of a taxonomic overhaul. BMC EVolutionary Biology 20: 77.
- Ambrose L. 2003. Three acoustic forms of Allen's galagos (Primates; Galagonidae) in the Central African region. Primates 44: 25-39.
- Balakirev AE, Rozhnov VV. 2019. Taxonomic revision of beautiful squirrels (Callosciurus, Rodentia: Sciuridae) from the Callosciurus erythraeus/finlaysonii complex and their distribution in eastern Indochina. Raffles Bulletin of Zoology 67: 459-489.
- Bandelt HJ, Forster P, Rohl A. 1999. Median-joining networks for inferring intraspecific phylogenies. Molecular Biology and EVolution 16: 37-48.
- Barratt CD, Bwong BA, Jehle R, Liedtke HC, Nagel P, Onstein RE, Portik DM, Streicher JW, Loader SP. 2018. Vanishing refuge? Testing the forest refuge hypothesis in coastal East Africa using genome-wide sequence data for seven amphibians. Molecular Ecology 27: 4289-4308.
- Bearder SK, Honess PE, Ambrose L. 1995. Species diversity among galagos with special reference to mate recognition. In: Alterman L, Doyle GA, Izard MK, eds. Creatures of the dark. Boston: Springer, 331-352.
- Bettridge CM, Kenworthy SP, Butynski TM, De Jong YA, De Kort SR. 2019. Vocal repertoire and intraspecific variation within two loud calls of the small-eared greater galago (Otolemur garnettii) in Tanzania and Kenya. Folia Primatologica 90: 319-335.
- Bickford D, Lohman DJ, Sodhi NS, Ng PKL, Meier R, Winker K, Ingram KK, Das I. 2007. Cryptic species as a window on diversity and conservation. Trends in Ecology & EVolution 22: 148-155.
- Burgess N, Clarke G, eds. 2000. Coastal forests of eastern Africa.IUCN,Forest Conservation Programme, Conservation International, Publications Service Unit. Gland, Switzerland/ Cambridge, UK.
- Burgess ND, Clarke GP, Rodgers WA. 1998. Coastal forests of eastern Africa: status, endemism patterns and their potential causes. Biological Journal of the Linnean Society 64: 337-367.
- Burgess N, D'Amico Hales J, Underwood E, Dinerstein E, Ecoregion WWF, eds. 2004. Terrestrial ecoregions of Africa and Madagascar: a conservation assessment. In: World aeildlife fund ecoregion assessments, 2nd edn. Washington DC: Island Press.
- Butynski TM, De Jong YA. 2019. Otolemur garnettii ssp. garnettii. The IUCN Red List of Threatened Species 2019: e. T136855A17989407.
- Carlen EJ, Rathbun GB, Olson LE, Sabuni CA , Stanley WT, Dumbacher JP. 2017. Reconstructing the molecular phylogeny of giant sengis (Macroscelidea; Macroscelididae; Rhynchocyon). Molecular Phylogenetics and EVolution 113: 150-160.
- Caro T. 2005. Antipredator defenses in birds and mammals. Chicago: University of Chicago Press.
- Carstens BC, Pelletier TA, Reid NM, Satler JD. 2013. How to fail at species delimitation. Molecular Ecology 22: 4369-4383.
- Ceballos G, Ehrlich PR. 2009. Discoveries of new mammal species and their implications for conservation and ecosystem services. Proceedings of the National Academy of Sciences of the USA 106: 3841-3846.
- Chu EHY, Bender MA. 1961. Chromosome cytology and evolution in primates. Science 133: 1399-1405.
- Coates DJ, Byrne M, Moritz C. 2018. Genetic diversity and conservation units: dealing with the species-population continuum in the age of genomics. Frontiers in Ecology and EVolution 6: 165.
- Craul M, Zimmermann E, Rasoloharijaona S , Randrianambinina B, Radespiel U. 2007. Unexpected species diversity of Malagasy primates (Lepilemur spp.) in the same biogeographical zone: a morphological and molecular approach with the description of two new species. BMC EVolutionary Biology 7: 83.
- Darwin C. 1859. The origin of species. Reprint. New York: Modern Library.
- De Boer LEM. 1973. Cytotaxonomy of the Lorisoidea (Primates; Prosimii). I. Chromosome studies and karyological relationships in the Galagidae. Genetica 44: 155-193.
- De Jong YA, Butynski TM. 2004. SurVeys of the Somali lesser bushbaby (Galago gallarum) and northern lesser bushbaby (Galago senegalensis) in Kenya and Ethiopia. Unpublished Report to Primate Action Fund and Primate Conservation Inc., Washington, DC.
- De Jong YA, Butynski TM. 2009. Primate biogeography, diVersity, taxonomy and conserVation of the coastal forests of Kenya. Report to the Critical Ecosystem Partnership Fund. Eastern Africa Primate Diversity and Conservation Program, Nanyuki, Kenya.
- De Jong YA, Butynski TM. 2011. Primate surVey on the north coast of Kenya, biogeography, diVersity, and conserVation. Report to the Critical Ecosystem Partnership Fund. Eastern Africa Primate Diversity and Conservation Program, Nanyuki, Kenya.
- De Jong YA, Butynski TM. 2018. Pocket identification guide of the primates of East Africa. Global Wildlife Conservation, Tropical Pocket Guide Series. Nairobi, Kenya.
- De Jong YA, Butynski TM, Perkin A, Svensson M. 2019. Otolemur garnettii. The IUCN Red List of Threatened species 2019: e.T15644A17963837.
- De Queiroz K. 2007. Species concepts and species delimitation. Systematic Biology 56: 879-886.
- De Queiroz K. 2020. An updated concept of subspecies resolves a dispute about the taxonomy of incompletely separated lineages. Herpetological ReVieae 51: 459-461.
- Drummond AJ, Suchard MA, Xie D, Rambaut A. 2012. Bayesian phylogenetics with BEAUti and the BEAST 1.7. Molecular Biology and EVolution 29: 1969-1973.
- Edgar RC. 2004. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research 32: 1792-1797.
- Ellison G, Jones M, Cain B, Bettridge CM. 2021. Taxonomic and geographic bias in 50 years of research on the behaviour and ecology of galagids. PloS One 16: e0261379.
- Ezard T, Fujisawa T, Barraclough TG. 2009. Splits: species' limits by threshold statistics. R Package V.1: r29.
- Fiser C, Robinson CT, Malard F. 2018. Cryptic species as a window into the paradigm shift of the species concept. Molecular Ecology 27: 613-635.
- Fujisawa T, Barraclough TG. 2013. Delimiting species using single-locus data and the Generalized Mixed Yule Coalescent approach: a revised method and evaluation on simulated data sets. Systematic Biology 62: 707-724.
- Genin F. 2021. Speciation by sensory drive in the Paragalago zanzibaricus species complex. International Journal of Primatology 42: 478-498.
- Geoffroy SHE. 1796. Mammiferes. Memoire sur les rapports naturels des makis Lemur, L. et description d'une espece nouvelle de Mammifere. Magasin Encyclopedique 2: 20-50.
- Gippoliti S, Cotterill FPD, Groves CP, Zinner D. 2018. Poor taxonomy and genetic rescue are possible co-agents of silent extinction and biogeographic homogenization among ungulate mammals. Biogeographia 33: 41-54.
- Gray JE. 1872. Notes on Propithecus, Indris, and other lemurs (Lemurina) in the British Museum. Proceedings of the Zoological Society of London 1872: 846-860.
- Groves 2001a. Why taxonomic stability is a bad idea, or why are there so few species of primates (or are there?). EVolutionary Anthropology: Issues, Neaes, and ReVieaes: Issues, Neaes, and ReVieaes 10: 192-198.
- Groves CP. 2001b. Primate taxonomy. Washington, DC: Smithsonian Institution Press.
- Groves CP, Cotterill FPD, Gippoliti S, Robovsky J, Roos C, Taylor PJ, Zinner D. 2017. Species definitions and conservation: a review and case studies from African mammals. ConserVation Genetics 18: 1247-1256.
- Grubb P, Butynski TM, Oates JF, Bearder SK, Disotell TR, Groves CP, Struhsaker TT. 2003. Assessment of the diversity of African primates. International Journal of Primatology 24: 1301-1357.
- Gursky S, Nekaris KAI. 2019 . Nocturnal primate communication: ecology, evolution and conservation. Folia Primatologica 90: 273-278.
- Hailer F, Kutschera VE, Hallstrom BM, Klassert D, Fain SR, Leonard JA, Arnason U, Janke A. 2012. Nuclear genomic sequences reveal that polar bears are an old and distinct bear lineage. Science 336: 344-347.
- Harcourt C, Perkin A. 2013. Otolemur garnettii. Small-eared greater galago. Mammals of Africa 2: 413-416.
- He K, Shinohara A, Helgen KM, Springer MS, Jiang XL, Campbell KL. 2017. Talpid mole phylogeny unites shrew moles and illuminates overlooked cryptic species diversity. Molecular Biology and EVolution 34: 78-87.
- Hillis DM. 2020. The detection and naming of geographic variation within species. Herpetological ReVieae 51: 52-56.
- Hotaling S, Foley ME, Lawrence NM, Bocanegra J, Blanco MB, Rasoloarison R , Kappeler PM , Barrett MA , Yoder AD , Weisrock DW. 2016 . Species discovery and validation in a cryptic radiation of endangered primates: coalescent-based species delimitation in Madagascar's mouse lemurs. Molecular Ecology 25: 2029-2045.
- Humeau L, Le Corre M, Reynolds SJ, Wearn C, Hennicke JC, Russell JC, Gomard Y, Magalon H, Pinet P, Gelin P, Couzi FX, Bemanaja E, Tatayah V, Ousseni B, Rocamora G, Talbot P, Shah N, Bugoni L, Silva DD, Jaeger A. 2020. Genetic structuring among colonies of a pantropical seabird: Implication for subspecies validation and conservation. Ecology and EVolution 10: 11886-11905. https://doi.org/10.1002/ece3.6635.
- Jenkins RL, Warren RF, Price JT. 2021. Addressing risks to biodiversity arising from a changing climate: the need for ecosystem restoration in the Tana River Basin, Kenya. PLoS One 16: e0254879.
- Kapli P, Lutteropp S, Zhang J, Kobert K, Pavlidis P, Stamatakis A, Flouri T. 2017. Multi-rate Poisson tree processes for single-locus species delimitation under maximum likelihood and Markov chain Monte Carlo. Bioinformatics 33: 1630-1638.
- Kent PE, Hunt JA, Johnstone DW. 1971. Geology and Geophysics of Coastal Sedimentary Basins of Tanzania. London: Institute of Geological Sciences, Geophysical Paper, Vol. 6, 1-101.
- Kimura M. 1980. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. Journal of Molecular EVolution 16: 111-120.
- Knowles LL, Carstens BC. 2007. Delimiting species without monophyletic gene trees. Systematic Biology 56: 887-895.
- Korshunova T, Picton B, Furfaro G, Mariottini P, Pontes M, Prkic J, Fletcher K, Malmberg K, Lundin K, Martynov A. 2019. Multilevel fine-scale diversity challenges the 'cryptic species' concept. Scientific Reports 9: 6732.
- Lanfear R, Calcott B, Ho SYW, Guindon S. 2012. PartitionFinder: combined selection of partitioning schemes and substitution models for phylogenetic analyses. Molecular Biology and EVolution 29: 1695-1701.
- Lanfear R, Frandsen PB, Wright AM, Senfeld T, Calcott B. 2017. PartitionFinder 2: new methods for selecting partitioned models of evolution for molecular and morphological phylogenetic analyses. Molecular Biology and EVolution 34: 772-773.
- Leigh JW, Bryant D. 2015. Popart: full-feature software for haplotype network construction. Methods in Ecology and EVolution 6: 1110-1116.
- Masters JC, Bearder SK. 2019. Otolemur crassicaudatus. The IUCN Red List of Threatened Species 2019: e. T15643A17963699.
- Masters JC, Bragg NP. 2000. Morphological correlates of speciation in bush babies. International Journal of Primatology 21: 793-813.
- Masters JC, Dunn DS. 1988. Distribution of erythrocytic allozymes in two sibling species of greater galago [Galago crassicaudatus (E. Geoffroy 1812) and G. garnettii (Ogilby 1838)]. American Journal of Primatology 14: 235-245.
- Masters JC, Lubinsky D. 1988. Morphological clues to genetic species: multivariate analysis of greater galago sibling species. American Journal of Physical Anthropology 75: 37-52.
- Masters JC, Stanyon R, Romagno D. 1987. Standardized karyotypes for the greater galagos, Galago crassicaudatus E. Geoffroy, 1812 and G. garnettii (Ogilby, 1838) (Primates: Prosimii). Genetica 75: 123-129.
- Masters JC, Genin F, Couette S, Groves CP, Nash SD, Delpero M, Pozzi L. 2017. A new genus for the eastern dwarf galagos (Primates: Galagidae). Zoological Journal of the Linnean Society 181: 229-241.
- Mayr E. 1963. Animal species and eVolution. Cambridge: Belknap Press.
- Monaghan MT, Wild R, Elliot M, Fujisawa T, Balke M, Inward DJ, Lees DC, Ranaivosolo R, Eggleton P, Barraclough TG. 2009. Accelerated species inventory on Madagascar using coalescent-based models of species delineation. Systematic Biology 58: 298-311.
- Moreau R, Pakenham R. 1940. Faunistics and ages of the East African islands. Nature 146: 462-462.
- Moreau R, Pakenham R. 1941. The land vertebrates of Pemba, Zanzibar, and Mafia: a zoogeographical study. Proceedings of the Zoological Society of London Series A 110: 97-128.
- Munds RA, Nekaris KAI, Ford SM. 2013. Taxonomy of the Bornean slow loris, with new species Nycticebus kayan (Primates, Lorisidae): Bornean loris taxonomy. American Journal of Primatology 75: 46-56.
- Munds RA, Titus CL , Moreira LAA , Eggert LS , Blomquist GE. 2021. Examining the molecular basis of coat color in a nocturnal primate family (Lorisidae). Ecology and EVolution 11: 4442-4459.
- Nekaris KAI. 2013. Family Galagidae (galagos). In: Mittermeier RA, Rylands AB, Wilson DE, eds. Handbook of the mammals of the aeorld, Vol. III primates. Barcelona: Lynx Edictions, 184-209.
- O'Brien SJ, Mayr E. 1991. Bureaucratic mischief: recognizing endangered species and subspecies. Science 251: 1187-1188.
- O'Connell KA, Prates I, Scheinberg LA, Mulder KP, Bell RC. 2021. Speciation and secondary contact in a fossorial island endemic, the Sao Tome caecilian. Molecular Ecology 30: 2859-2871.
- Olson TR. 1979. Studies on aspects of the morphology of the genus Otolemur Coquerel, 1859 (Primates: Galagidae). London: University of London.
- Padial JM, De la Riva I. 2021. A paradigm shift in our view of species drives current trends in biological classification. Biological ReVieaes 96: 731-751.
- Padial JM, Miralles A, De la Riva I, Vences M. 2010. The integrative future of taxonomy. Frontiers in Zoology 7: 1-14.
- Patton JL, Da Silva MNF, Malcolm JR. 2000. Mammals of the Rio Jurua and the evolutionary and ecological diversification of Amazonia. Bulletin of the American Museum of Natural History 2000(244): 1-306.
- Patton JL, Conroy CJ. 2017. The conundrum of subspecies: morphological diversity among desert populations of the California vole (Microtus californicus, Cricetidae). Journal of Mammalogy 98: 1010-1026.
- Phukuntsi MA, Du Plessis M, Dalton DL, Jansen R, Cuozzo FP, Sauther ML, Kotze A. 2020. Population genetic structure of the thick-tailed bushbaby (Otolemur crassicaudatus) from the Soutpansberg Mountain range, northern South Africa, based on four mitochondrial DNA regions. Mitochondrial DNA Part A 31: 1-10.
- Pickford M. 2008. Middle Miocene vertebrate fauna from Pemba Island, Tanzania: research letters. South African Journal of Science 104: 231-237.
- Pons J, Barraclough TG, Gomez-Zurita J, Cardoso A, Duran DP, Hazell S, Kamoun S, Sumlin WD, Vogler AP. 2006. Sequence-based species delimitation for the DNA taxonomy of undescribed insects. Systematic Biology 55: 595-609.
- Pozzi L, Penna A. 2022. Rocks and clocks revised: new promises and challenges in dating the primate tree of life. EVolutionary Anthropology: Issues, Neaes, and ReVieaes 31: 138-153.
- Pozzi L, Disotell TR, Masters JC. 2014a. A multilocus phylogeny reveals deep lineages within African galagids (Primates: Galagidae). BMC EVolutionary Biology 14: 72.
- Pozzi L, Hodgson JA, Burrell AS, Sterner KN, Raaum RL, Disotell TR. 2014b. Primate phylogenetic relationships and divergence dates inferred from complete mitochondrial genomes. Molecular Phylogenetics and EVolution 75: 165-183.
- Pozzi L, Nekaris KAI, Perkin A, Bearder SK, Pimley ER, Schulze H, Streicher U, Nadler T, Kitchener A, Zischler H, Zinner D, Roos C. 2015. Remarkable ancient divergences amongst neglected lorisiform primates: phylogeny of lorisiform primates. Zoological Journal of the Linnean Society 175: 661-674.
- Pozzi L, Disotell TR, Bearder SK, Karlsson J, Perkin A, Gamba M. 2019. Species boundaries within morphologically cryptic galagos: evidence from acoustic and genetic data. Folia Primatologica 90: 279-299.
- Pozzi L, Penna A, Bearder SK, Karlsson J, Perkin A, Disotell TR. 2020. Cryptic diversity and species boundaries within the Paragalago zanzibaricus species complex. Molecular Phylogenetics and EVolution 150: 106887.
- Prendergast ME, Rouby H, Punnwong P, Marchant R, Crowther A, Kourampas N, Shipton C, Walsh M, Lambeck K, Boivin NL. 2016. Continental island formation and the archaeology of defaunation on Zanzibar, eastern Africa. PLoS One 11: e0149565.
- Puillandre N, Lambert A, Brouillet S, Achaz G. 2012. ABGD, automatic barcode gap discovery for primary species delimitation. Molecular Ecology 21: 1864-1877.
- Puillandre N, Brouillet S, Achaz G. 2021. ASAP: assemble species by automatic partitioning. Molecular Ecology Resources 21: 609-620.
- Rabosky DL, Hutchinson MN, Donnellan SC, Talaba AL, Lovette IJ. 2014. Phylogenetic disassembly of species boundaries in a widespread group of Australian skinks (Scincidae: Ctenotus). Molecular Phylogenetics and EVolution 77: 71-82.
- Reydon TA, Kunz W. 2021. Classification below the species level: when are infraspecific groups biologically meaningful? Biological Journal of the Linnean Society 134: 246-260.
- Rivera PC, Gonzalez-Ittig RE, Robainas Barcia A, Trimarchi LI, Levis S, Calderon GE, Gardenal CN. 2018. Molecular phylogenetics and environmental niche modeling reveal a cryptic species in the Oligoryzomys flaVescens complex (Rodentia, Cricetidae). Journal of Mammalogy 99: 363-376.
- Roos C, Portela Miguez R, Sabin R, Louis E Jr, Hofreiter M, Zinner D. 2021. Mitogenomes of historical type specimens unravel the taxonomy of sportive lemurs (Lepilemur spp.) in northwest Madagascar. Zoological Research 42: 428-432.
- Rowe N, Goodall J, Mittermeier RA. 1996. The pictorial guide to the liVing primates, Vol. 236. Charlestown: Pogonias Press.
- Roycroft E, MacDonald AJ, Moritz C, Moussalli A, Portela Miguez R, Rowe KC. 2021. Museum genomics reveals the rapid decline and extinction of Australian rodents since European settlement. Proceedings of the National Academy of Sciences of the USA 118: e2021390118.
- Seiffert ER, Simons EL, Attia Y. 2003. Fossil evidence for an ancient divergence of lorises and galagos. Nature 422: 421-424.
- Seiffert ER, Simons EL, Ryan TM, Attia Y. 2005. Additional remains of Wadilemur elegans, a primitive stem galagid from the late Eocene of Egypt. Proceedings of the National Academy of Sciences of the USA 102: 11396-11401.
- Shekelle M,Groves CP,Maryanto I,Mittermeier RA.2017.Two new tarsier species (Tarsiidae, Primates) and the biogeography of Sulawesi, Indonesia. Primate ConserVation 31: 61-69.
- Smith A. 1833. An epitome of African zoology. South African Quarterly Journal (series 2) 1: 16-32, 49-51 [order Quadrumana].
- Stamatakis A. 2014.RAxML v.8:a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics 30: 1312-1313.
- Stockley GM. 1942. The geology of the Zanzibar Protectorate and its relation to the East African mainland. Geological Magazine 79: 233-240.
- Suarez-Villota EY, Carmignotto AP, Brandao MV, Percequillo AR, de J Silva MJ. 2018. Systematics of the genus Oecomys (Sigmodontinae: Oryzomyini): molecular phylogenetic, cytogenetic and morphological approaches reveal cryptic species. Zoological Journal of the Linnean Society 184: 182-210.
- Svensson MS, Ingram DJ, Nekaris KAI, Nijman V. 2015. Trade and ethnozoological use of African lorisiforms in the last 20 years. Hystrix 26: 153-161.
- Svensson MS, Bersacola E, Mills MS, Munds RA , Nijman V , Perkin A , Masters JC, Couette S , Nekaris KAI, Bearder SK. 2017. A giant among dwarfs: a new species of galago (Primates: Galagidae) from Angola. American Journal of Physical Anthropology 163: 30-43.
- Svensson MS, Morcatty TQ, Nijman V, Shepherd CR. 2021. Shedding light on the trade in nocturnal galagos. Primate ConserVation 35: 13.
- Tattersall I. 2007. Madagascar's lemurs: cryptic diversity or taxonomic inflation? EVolutionary Anthropology: Issues, Neaes, and ReVieaes 16: 12-23.
- Taylor PJ, Macdonald A, Goodman SM, Kearney T, Cotterill FPD , Stoffberg S , Monadjem A , Schoeman MC, Guyton J, Naskrecki P, Richards LR. 2018. Integrative taxonomy resolves three new cryptic species of small southern African horseshoe bats (Rhinolophus). Zoological Journal of the Linnean Society 184: 1249-1276.
- Thiele D, Razafimahatratra E, Hapke A. 2013. Discrepant partitioning of genetic diversity in mouse lemurs and dwarf lemurs - biological reality or taxonomic bias? Molecular Phylogenetics and EVolution 69: 593-609.
- Van der Valk T, Diez-del-Molino D, Marques-Bonet T, Guschanski K, Dalen L. 2019. Historical genomes reveal the genomic consequences of recent population decline in eastern gorillas. Current Biology 29: 165- 170.e6.
- Zimmermann E . 1995. Acoustic communication in nocturnal prosimians. In: Alterman L, Doyle GA , Izard MK, eds. Creatures of the dark. Boston: Springer, 311-330.