Published April 24, 2023
| Version v2.4.0
Software
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LayNii: A software suite for layer-fMRI
Description
Modifications
LN2_MULTILATERATE
: Speed up perimeter update. #75LN2_VORONOI
: Add maximum distance parameter (useful for very large files e.g. 0.1 mm whole brain). #75LN2_COLUMNS
andLN2_IFPOINTS
: Now prints the maximum distance between centroids/points. Useful for understanding the approximately average distance between centroids/points. #70
LN2_PATCH_FLATTEN_2D
: For flattening 2D slices (e.g. histology data). See this video for usage: https://youtu.be/WUgaQBJkRPA14 . #71LN2_PATCH_UNFLATTEN
: Unflattening for 3D flattened files (e.g. vitual Petri dishes, cakes ...). See the last 15 minutes of this video for and example usage: https://youtu.be/tIuKG3rtVk4 . #69
There are the new programs which might be modified without concerning backwards compatibility. They are highlighted in the makefile and will be removed from that section once stabilized.
LN2_GRAMAG
: Compute gradient magnitude images. Can compute phase image gradient magnitudes correctly when usingcircular
flag. #65LN2_NEIGHBORS
: Find 1st order neighbors of an any given input containing integers (segmentations, parcellations, custom regions of interests etc.). This program yields a comma spearated values file (.CSV) as the default output. In the future we might make use of such neighborhood information files in LayNii. #66
Notes
Files
layerfMRI/LAYNII-v2.4.0.zip
Files
(80.4 MB)
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Additional details
Related works
- Is supplement to
- https://github.com/layerfMRI/LAYNII/tree/v2.4.0 (URL)