{"@context": {"owl": "http://www.w3.org/2002/07/owl#", "rdf": "http://www.w3.org/1999/02/22-rdf-syntax-ns#", "rdfs": "http://www.w3.org/2000/01/rdf-schema#", "schema": "http://schema.org/", "bioschemas": "https://discovery.biothings.io/view/bioschemas/", "niaid": "https://discovery.biothings.io/view/niaid/"}, "@id": "https://discovery.biothings.io/view/niaid/", "@graph": [{"@id": "niaid:ScholarlyArticle", "@type": "rdfs:Class", "rdfs:comment": "A scholarly article in which the dataset or computational tool is cited.", "rdfs:label": "ScholarlyArticle", "rdfs:subClassOf": {"@id": "schema:ScholarlyArticle"}, "schema:isPartOf": {"@id": "https://discovery.biothings.io/view/niaid/"}, "$validation": {"$schema": "http://json-schema.org/draft-07/schema#", "type": "object", "properties": {"name": {"description": "Name of the article", "type": "string"}, "doi": {"description": "Digital Object Identifier (DOI) for the article", "type": "string"}, "pmid": {"description": "PubMed ID (PMID) for the article", "type": "string"}, "pmcid": {"description": "PubMed Central (PMC) ID for the article", "type": "string"}, "url": {"description": "URL where the article can be found", "type": "string", "format": "uri"}}, "required": ["url"], "recommended": ["name", "doi", "pmid", "pmcid"]}}, {"@id": "niaid:doi", "@type": "rdf:Property", "rdfs:comment": "Digital Object Identifier (DOI) for the article", "rdfs:label": "doi", "schema:domainIncludes": [{"@id": "niaid:ScholarlyArticle"}], "schema:rangeIncludes": [{"@id": "schema:Text"}]}, {"@id": "niaid:pmid", "@type": "rdf:Property", "rdfs:comment": "PubMed ID (PMID) for the article", "rdfs:label": "pmid", "schema:domainIncludes": [{"@id": "niaid:ScholarlyArticle"}], "schema:rangeIncludes": [{"@id": "schema:Text"}]}, {"@id": "niaid:pmcid", "@type": "rdf:Property", "rdfs:comment": "PubMed Central (PMC) ID for the article", "rdfs:label": "pmcid", "schema:domainIncludes": [{"@id": "niaid:ScholarlyArticle"}], "schema:rangeIncludes": [{"@id": "schema:Text"}]}, {"@id": "niaid:MonetaryGrant", "@type": "rdfs:Class", "rdfs:comment": "Funding that supports (sponsors) the collection of this dataset or computational tool through some kind of financial contribution", "rdfs:label": "MonetaryGrant", "rdfs:subClassOf": {"@id": "schema:MonetaryGrant"}, "schema:isPartOf": {"@id": "https://discovery.biothings.io/view/niaid/"}, "$validation": {"$schema": "http://json-schema.org/draft-07/schema#", "type": "object", "properties": {"funder": {"description": "An organization associated with a creator or funder of a dataset", "oneOf": [{"$ref": "#/definitions/funder"}, {"type": "array", "items": {"$ref": "#/definitions/funder"}}]}, "description": {"type": "string", "description": "description about the funding award / grant"}, "url": {"type": "string", "description": "award / grant URL"}, "identifier": {"type": "string", "description": "Unique identifier(s) for the grant(s) used to fund the Dataset"}}, "required": ["funder", "identifier"], "recommended": ["description", "url"], "definitions": {"funder": {"type": "object", "@type": "Organization", "description": "Information about a single funder", "properties": {"name": {"type": "string", "description": "An organization associated with a creator or funder of a dataset"}, "parentOrganization": {"type": "string", "description": "name of the parent funding organization"}}, "required": ["name"]}}}}, {"@id": "niaid:TemporalInterval", "@type": "rdfs:Class", "rdfs:comment": "Temporal information relevant to the dataset, NOT the dataset record.", "rdfs:label": "TemporalInterval", "rdfs:subClassOf": {"@id": "schema:Schedule"}, "schema:isPartOf": {"@id": "https://discovery.biothings.io/view/niaid/"}, "$validation": {"$schema": "http://json-schema.org/draft-07/schema#", "type": "object", "properties": {"temporalType": {"description": "Categorization of how the location relates to the dataset or computational tool", "owl:cardinality": "many", "oneOf": [{"type": "string", "enum": ["exposure", "collection", "screening", "treatment", "study date", "other", "unknown"]}, {"type": "array", "items": {"type": "string", "enum": ["exposure", "collection", "screening", "treatment", "study date", "other", "unknown"]}}]}, "startDate": {"description": "The start date of the temporal interval for the dataset", "owl:cardinality": "one", "type": "string", "format": "date"}, "name": {"description": "String describing the temporal interval", "owl:cardinality": "one", "type": "string"}, "endDate": {"description": "The end date of the temporal interval for the dataset.", "owl:cardinality": "one", "type": "string", "format": "date"}, "duration": {"description": "A time interval in ISO 8601 duration format.", "owl:cardinality": "one", "type": "string"}}, "recommended": ["temporalType", "startDate", "endDate", "duration"], "optional": ["name"]}}, {"@id": "niaid:temporalType", "@type": "rdf:Property", "rdfs:comment": "A categorization of a temporal relationship to a dataset, NOT the dataset record. Eg- data collection temporal interval, screening temporal interval, etc.", "rdfs:label": "temporalType", "schema:domainIncludes": [{"@id": "niaid:TemporalInterval"}], "schema:rangeIncludes": [{"@id": "schema:Text"}]}, {"@id": "niaid:DataDownload", "@type": "rdfs:Class", "rdfs:comment": "A dataset in downloadable form.", "rdfs:label": "DataDownload", "rdfs:subClassOf": {"@id": "schema:DataDownload"}, "schema:isPartOf": {"@id": "https://discovery.biothings.io/view/niaid/"}, "$validation": {"$schema": "http://json-schema.org/draft-07/schema#", "type": "object", "properties": {"dateModified": {"description": "date when the data download / file has been modified", "type": "string", "format": "date"}, "contentUrl": {"description": "Location (URL) from which the data can be downloaded", "type": "string", "format": "uri"}}, "required": ["dateModified", "contentUrl"]}}, {"@id": "niaid:infectiousAgent", "@type": "rdf:Property", "rdfs:comment": "Infectious agent(s) / pathogen(s) which are the focus of the dataset or tool (e.g. SARS-CoV-2)", "rdfs:label": "infectiousAgent", "schema:domainIncludes": [{"@id": "niaid:Dataset"}, {"@id": "niaid:ComputationalTool"}], "schema:rangeIncludes": [{"@id": "schema:Text"}]}, {"@id": "niaid:healthCondition", "@type": "rdf:Property", "rdfs:comment": "The infectious disease(s) / health condition(s) which are the focus of the dataset or computational tool (e.g. COVID-19, coronavirus)", "rdfs:label": "healthCondition", "schema:domainIncludes": [{"@id": "niaid:Dataset"}, {"@id": "niaid:ComputationalTool"}], "schema:rangeIncludes": [{"@id": "schema:Text"}]}, {"@id": "niaid:funding", "@type": "rdf:Property", "rdfs:comment": "Funding that supports (sponsors) the collection of this dataset or computational tool through some kind of financial contribution", "rdfs:label": "funding", "schema:domainIncludes": [{"@id": "niaid:Dataset"}, {"@id": "niaid:ComputationalTool"}], "schema:rangeIncludes": [{"@id": "niaid:MonetaryGrant"}], "schema:sameAs": {"@id": "schema:funding"}}, {"@id": "niaid:species", "@type": "rdf:Property", "rdfs:comment": "Species(es) from which dataset has been collected or for which the tool was designed or applied.", "rdfs:label": "species", "schema:domainIncludes": [{"@id": "niaid:Dataset"}, {"@id": "niaid:ComputationalTool"}], "schema:rangeIncludes": [{"@id": "schema:Text"}]}, {"@id": "niaid:Organization", "@type": "rdfs:Class", "rdfs:comment": "An organization associated with a creator or funder of a dataset or computational tool", "rdfs:label": "Organization", "rdfs:subClassOf": {"@id": "schema:Organization"}, "schema:isPartOf": {"@id": "https://discovery.biothings.io/view/niaid/"}, "$validation": {"$schema": "http://json-schema.org/draft-07/schema#", "type": "object", "properties": {"name": {"description": "Name of the organization", "type": "string"}, "parentOrganization": {"description": "Name of the parent organization", "type": "string"}}, "required": ["name"], "recommended": ["parentOrganization"]}}, {"@id": "niaid:AdministrativeArea", "@type": "rdfs:Class", "rdfs:comment": "Geospatial location information.", "rdfs:label": "AdministrativeArea", "rdfs:subClassOf": {"@id": "schema:AdministrativeArea"}, "schema:isPartOf": {"@id": "https://discovery.biothings.io/view/niaid/"}, "$validation": {"$schema": "http://json-schema.org/draft-07/schema#", "type": "object", "properties": {"locationType": {"description": "Categorization of how the location relates to the dataset or computational tool", "owl:cardinality": "many", "oneOf": [{"type": "string", "enum": ["residence", "exposure", "collection", "screening", "treatment", "study location", "other", "unknown"]}, {"type": "array", "items": {"type": "string", "enum": ["residence", "exposure", "collection", "screening", "treatment", "study location", "other", "unknown"]}}]}, "administrativeType": {"description": "the type of administrative area", "owl:cardinality": "one", "type": "string", "enum": ["province", "district", "chiefdom", "village", "city", "country", "prefecture", "sub-prefecture", "clan", "Federal Capital Territory", "state", "Local Government Area", "ward"]}, "alternateName": {"description": "An alias for the location.", "owl:cardinality": "many", "oneOf": [{"type": "string"}, {"type": "array", "items": {"type": "string"}}]}, "identifier": {"description": "An identifier for the location, preferably a Wikidata ID.", "owl:cardinality": "one", "type": "string"}, "name": {"description": "The name of the item.", "owl:cardinality": "one", "type": "string"}}, "recommended": ["locationType", "identifier", "name", "administrativeType"], "optional": ["alternateName"]}}, {"@id": "niaid:locationType", "@type": "rdf:Property", "rdfs:comment": "Categorization of how the location relates to the dataset or computational tool", "rdfs:label": "locationType", "schema:domainIncludes": [{"@id": "niaid:AdministrativeArea"}], "schema:rangeIncludes": [{"@id": "schema:Text"}]}, {"@id": "niaid:administrativeType", "@type": "rdf:Property", "rdfs:comment": "Descriptive categorization of the level of Administrative Area", "rdfs:label": "administrativeType", "schema:domainIncludes": [{"@id": "niaid:AdministrativeArea"}], "schema:rangeIncludes": [{"@id": "schema:Text"}]}, {"@id": "niaid:ComputationalTool", "@type": "rdfs:Class", "rdfs:comment": "A schema describing a minimal ComputationalTool for the National Institute of Allergy and Infectious Disease (NIAID). A ComputationalTool is a software used for the collection, processing, distribution, analysis, visualization, interpretation, etc. of data. Additional schema.org and/or custom properties could be added.", "rdfs:label": "ComputationalTool", "rdfs:subClassOf": {"@id": "bioschemas:ComputationalTool"}, "$validation": {"$schema": "http://json-schema.org/draft-07/schema#", "type": "object", "properties": {"name": {"description": "Descriptive name of the computational tool", "owl:cardinality": "one", "type": "string"}, "description": {"description": "Longer description of what is contained in the computational tool", "owl:cardinality": "one", "type": "string"}, "identifier": {"description": "Identifiers for the computational tool (ideally less than 15 characters)", "owl:cardinality": "many", "oneOf": [{"type": "string"}, {"type": "array", "items": {"type": "string"}}]}, "creator": {"description": "Name of the author or organization that created the computational tool.  Note: schema.org/creator and schema.org/organization have additional fields that can provide more information about the author/organization, if desired.", "owl:cardinality": "many", "anyOf": [{"$ref": "#/definitions/person"}, {"type": "array", "items": {"$ref": "#/definitions/person"}}, {"$ref": "#/definitions/organization"}, {"type": "array", "items": {"$ref": "#/definitions/organization"}}]}, "sdPublisher": {"description": "Original publisher of the ComputationalTool metadata (like GitHub). Indicates the party responsible for generating and publishing the current structured data markup, typically in cases where the structured data is derived automatically from existing published content but published on a different site. For example, student projects and open data initiatives often re-publish existing content with more explicitly structured metadata. The sdPublisher property helps make such practices more explicit.", "owl:cardinality": "many", "anyOf": [{"$ref": "#/definitions/person"}, {"type": "array", "items": {"$ref": "#/definitions/person"}}, {"$ref": "#/definitions/organization"}, {"type": "array", "items": {"$ref": "#/definitions/organization"}}]}, "url": {"description": "software/code location.", "owl:cardinality": "one", "type": "string", "format": "uri"}, "dateModified": {"description": "date when the computational tool has been modified", "owl:cardinality": "one", "type": "string", "format": "date"}, "license": {"description": "A license document that applies to this content, typically indicated by URL.", "owl:cardinality": "one", "type": "string", "format": "uri"}, "citation": {"description": "Journal article or other publication associated with the computational tool (stored as an object, not a string)", "owl:cardinality": "many", "oneOf": [{"$ref": "#/definitions/article"}, {"type": "array", "items": {"$ref": "#/definitions/article"}}]}, "applicationCategory": {"description": "Type of software application, e.g. 'Game, Multimedia'. Please use terms from the 'Tool type' table in the biotools documentation.", "owl:cardinality": "many", "anyOf": [{"type": "string"}, {"type": "array", "items": {"type": "string"}}, {"type": "string", "format": "uri"}, {"type": "array", "items": {"type": "string", "format": "uri"}}]}, "applicationSubCategory": {"description": "Subcategory of the application, e.g. 'Arcade Game'. Use an EDAM:Topic to describe the category of application", "owl:cardinality": "many", "oneOf": [{"$ref": "#/definitions/edamTopic"}, {"type": "array", "items": {"$ref": "#/definitions/edamTopic"}}]}, "codeRepository": {"description": "Link to the source code repository of the tool.", "owl:cardinality": "many", "oneOf": [{"type": "string", "format": "uri"}, {"type": "array", "items": {"type": "string", "format": "uri"}}]}, "programmingLanguage": {"description": "The main programming language(s) used to build or execute the tool. Please use terms from the \u2018Programming language\u2019 table in the Bio.Tools documentation", "owl:cardinality": "many", "oneOf": [{"type": "string"}, {"type": "array", "items": {"type": "string"}}]}, "softwareVersion": {"description": "Version(s) of the tool, which this information is valid for. Can also be a comma-delimited list and include hyphen-separated ranges of versions.", "owl:cardinality": "many", "oneOf": [{"type": "string"}, {"type": "array", "items": {"type": "string"}}]}, "featureList": {"description": "Features or modules provided by this application (and possibly required by other applications). Functionality provided by the tool. This is similar to measurementTechnique in Dataset.", "owl:cardinality": "many", "anyOf": [{"$ref": "#/definitions/edamOperation"}, {"type": "array", "items": {"$ref": "#/definitions/edamOperation"}}, {"type": "string", "format": "uri"}, {"type": "array", "items": {"type": "string", "format": "uri"}}]}, "species": {"description": "Species(es) from which the computation tool is based", "owl:cardinality": "many", "oneOf": [{"$ref": "#/definitions/speciesControlledVocabulary"}, {"type": "array", "items": {"$ref": "#/definitions/speciesControlledVocabulary"}}]}, "infectiousAgent": {"description": "Infectious agent(s) / pathogen(s) which are the focus of the computational tool (e.g. SARS-CoV-2)", "owl:cardinality": "many", "oneOf": [{"$ref": "#/definitions/pathogenControlledVocabulary"}, {"type": "array", "items": {"$ref": "#/definitions/pathogenControlledVocabulary"}}]}, "healthCondition": {"description": "The infectious disease(s) or health condition(s) which are the focus of the computational tool (e.g. COVID-19, pneumonia, etc.)", "owl:cardinality": "many", "oneOf": [{"$ref": "#/definitions/diseaseControlledVocabulary"}, {"type": "array", "items": {"$ref": "#/definitions/diseaseControlledVocabulary"}}]}, "funding": {"description": "Funding that supports (sponsors) the collection of this computational tool through some kind of financial contribution", "owl:cardinality": "many", "oneOf": [{"$ref": "#/definitions/monetaryGrant"}, {"type": "array", "items": {"$ref": "#/definitions/monetaryGrant"}}]}, "softwareHelp": {"description": "A documentation of the tool.", "owl:cardinality": "many", "oneOf": [{"$ref": "#/definitions/documentation"}, {"type": "array", "items": {"$ref": "#/definitions/documentation"}}]}}, "required": ["name", "description", "identifier", "creator", "url", "funding"], "recommended": ["dateModified", "license", "citation", "applicationCategory", "applicationSubCategory", "codeRepository", "programmingLanguage", "softwareVersion", "featureList", "softwareHelp"], "optional": ["sdPublisher", "species", "infectiousAgent", "healthCondition"], "definitions": {"edamTopic": {"@type": "DefinedTerm", "type": "object", "strict": false, "vocabulary": {"ontology": ["edam"], "children_of": ["http://edamontology.org/topic_0003"], "property": {"name": {"type": "string"}, "url": {"type": "string", "format": "uri"}, "identifier": {"type": "string"}}}}, "edamOperation": {"@type": "DefinedTerm", "type": "object", "strict": false, "vocabulary": {"ontology": ["edam"], "children_of": ["http://edamontology.org/operation_0004"], "property": {"name": {"type": "string"}, "url": {"type": "string", "format": "uri"}, "identifier": {"type": "string"}}}}, "article": {"description": "A scholarly article in which the computational tool is cited.", "@type": "ScholarlyArticle", "type": "object", "properties": {"name": {"type": "string"}, "url": {"type": "string", "format": "uri"}}, "required": ["url"]}, "person": {"description": "Reusable person definition", "@type": "Person", "type": "object", "properties": {"name": {"type": "string"}}, "required": ["name"]}, "organization": {"description": "Reusable organization definition", "@type": "Organization", "type": "object", "properties": {"name": {"type": "string"}}, "required": ["name"]}, "pathogenControlledVocabulary": {"description": "collection of vocabulary terms defined in ontologies", "@type": "CreativeWork", "type": "string", "vocabulary": {"ontology": ["ncbitaxon"], "children_of": ["http://purl.obolibrary.org/obo/NCBITaxon_10239", "http://purl.obolibrary.org/obo/NCBITaxon_2"]}, "strict": false}, "speciesControlledVocabulary": {"description": "collection of vocabulary terms defined in ontologies", "@type": "CreativeWork", "type": "string", "vocabulary": {"ontology": ["ncbitaxon"], "children_of": ["http://purl.obolibrary.org/obo/NCBITaxon_131567", "http://purl.obolibrary.org/obo/NCBITaxon_10239"]}, "strict": false}, "diseaseControlledVocabulary": {"description": "collection of vocabulary terms defined in ontologies", "@type": "CreativeWork", "type": "string", "vocabulary": {"ontology": ["mondo"], "children_of": ["http://purl.obolibrary.org/obo/MONDO_0000001"]}, "strict": false}, "monetaryGrant": {"type": "object", "@type": "MonetaryGrant", "description": "Funding that supports (sponsors) the collection of this computational tool through some kind of financial contribution", "properties": {"funder": {"description": "An organization associated with a creator or funder of a computational tool", "oneOf": [{"$ref": "#/definitions/funder"}, {"type": "array", "items": {"$ref": "#/definitions/funder"}}]}, "description": {"type": "string", "description": "description about the funding award / grant"}, "url": {"type": "string", "description": "award / grant URL"}, "identifier": {"type": "string", "description": "Unique identifier(s) for the grant(s) used to fund the Dataset"}}, "required": ["funder", "identifier"]}, "funder": {"type": "object", "@type": "Organization", "description": "Information about a single funder", "properties": {"name": {"type": "string", "description": "An organization associated with a creator or funder of a computational tool"}, "parentOrganization": {"type": "string", "description": "name of the parent funding organization"}}, "required": ["name"]}, "documentation": {"@type": "CreativeWork", "type": "object", "properties": {"url": {"type": "string", "format": "uri"}}}}}}, {"@id": "niaid:codeRepository", "@type": "rdf:Property", "rdfs:comment": "Link to the source code repository of the tool.", "rdfs:label": "codeRepository", "schema:domainIncludes": {"@id": "niaid:ComputationalTool"}, "schema:rangeIncludes": [{"@id": "schema:URL"}]}, {"@id": "niaid:programmingLanguage", "@type": "rdf:Property", "rdfs:comment": "The main programming language(s) used to build or execute the tool. Please use terms from the \u2018Programming language\u2019 table in the Bio.Tools documentation", "rdfs:label": "programmingLanguage", "schema:domainIncludes": {"@id": "niaid:ComputationalTool"}, "schema:rangeIncludes": [{"@id": "schema:Text"}, {"@id": "schema:ComputerLanguage"}]}, {"@id": "niaid:funder", "@type": "rdf:Property", "rdfs:comment": "An organization that supports (sponsors) the development or maintenance of this computational tool through some kind of financial contribution.", "rdfs:label": "funder", "schema:domainIncludes": [{"@id": "niaid:MonetaryGrant"}], "schema:rangeIncludes": {"@id": "niaid:Organization"}, "schema:sameAs": {"@id": "schema:funder"}}, {"@id": "niaid:Dataset", "@type": "rdfs:Class", "rdfs:comment": "A schema describing a minimal Dataset for the National Institute of Allergy and Infectious Disease (NIAID). A dataset is a collection of data of a particular experimental type. Additional schema.org and/or custom properties could be added.", "rdfs:label": "Dataset", "rdfs:subClassOf": {"@id": "schema:Dataset"}, "schema:isPartOf": {"@id": "https://discovery.biothings.io/view/niaid/"}, "$validation": {"$schema": "http://json-schema.org/draft-07/schema#", "type": "object", "properties": {"name": {"description": "Descriptive name of the dataset", "owl:cardinality": "one", "type": "string"}, "description": {"description": "Longer description of what is contained in the dataset", "owl:cardinality": "one", "type": "string"}, "measurementTechnique": {"description": "A technique or technology used in a Dataset, corresponding to the method used for measuring the corresponding variable(s).", "owl:cardinality": "many", "oneOf": [{"$ref": "#/definitions/controlledVocabulary"}, {"type": "array", "items": {"$ref": "#/definitions/controlledVocabulary"}}]}, "identifier": {"description": "Identifiers for the dataset (ideally less than 15 characters)", "owl:cardinality": "many", "oneOf": [{"type": "string"}, {"type": "array", "items": {"type": "string"}}]}, "creator": {"description": "Name of the author or organization that created the dataset.  Note: schema.org/creator and schema.org/organization have additional fields that can provide more information about the author/organization, if desired.", "owl:cardinality": "many", "anyOf": [{"$ref": "#/definitions/person"}, {"type": "array", "items": {"$ref": "#/definitions/person"}}, {"$ref": "#/definitions/organization"}, {"type": "array", "items": {"$ref": "#/definitions/organization"}}]}, "sdPublisher": {"description": "Original publisher of the Dataset metadata (like GenBank, ImmPort, etc.). Indicates the party responsible for generating and publishing the current structured data markup, typically in cases where the structured data is derived automatically from existing published content but published on a different site. For example, student projects and open data initiatives often re-publish existing content with more explicitly structured metadata. The sdPublisher property helps make such practices more explicit.", "owl:cardinality": "many", "anyOf": [{"$ref": "#/definitions/person"}, {"type": "array", "items": {"$ref": "#/definitions/person"}}, {"$ref": "#/definitions/organization"}, {"type": "array", "items": {"$ref": "#/definitions/organization"}}]}, "distribution": {"description": "DataDownload objects, which contain the URL link to download the raw, analyzed, and summary data associated with the dataset as well as associated metadata for the file.", "owl:cardinality": "many", "oneOf": [{"$ref": "#/definitions/dataDownload"}, {"type": "array", "items": {"$ref": "#/definitions/dataDownload"}}]}, "citation": {"description": "Journal article or other publication associated with the dataset (stored as an object, not a string)", "owl:cardinality": "many", "oneOf": [{"$ref": "#/definitions/article"}, {"type": "array", "items": {"$ref": "#/definitions/article"}}]}, "funding": {"description": "Funding that supports (sponsors) the collection of this dataset through some kind of financial contribution", "owl:cardinality": "many", "oneOf": [{"$ref": "#/definitions/monetaryGrant"}, {"type": "array", "items": {"$ref": "#/definitions/monetaryGrant"}}]}, "license": {"description": "A license document that applies to this content, typically indicated by URL.", "type": "string", "owl:cardinality": "one", "format": "uri"}, "species": {"description": "Species(es) from which dataset has been collected", "owl:cardinality": "many", "oneOf": [{"$ref": "#/definitions/speciesControlledVocabulary"}, {"type": "array", "items": {"$ref": "#/definitions/speciesControlledVocabulary"}}]}, "infectiousAgent": {"description": "Infectious agent(s) / pathogen(s) which are the focus of the dataset (e.g. SARS-CoV-2)", "owl:cardinality": "many", "oneOf": [{"$ref": "#/definitions/pathogenControlledVocabulary"}, {"type": "array", "items": {"$ref": "#/definitions/pathogenControlledVocabulary"}}]}, "healthCondition": {"description": "The Infectious disease(s) / health condition(s) which are the focus of the dataset (e.g. COVID-19, pneumonia, etc.)", "owl:cardinality": "many", "oneOf": [{"$ref": "#/definitions/diseaseControlledVocabulary"}, {"type": "array", "items": {"$ref": "#/definitions/diseaseControlledVocabulary"}}]}, "spatialCoverage": {"description": "spatial information related to the dataset", "owl:cardinality": "many", "oneOf": [{"$ref": "#/definitions/place"}, {"type": "array", "items": {"$ref": "#/definitions/place"}}]}, "temporalCoverage": {"description": "temporal information related to the dataset. For dates pertaining to the dataset record, use datePublished, dateCreated, dateModified, etc.", "owl:cardinality": "many", "oneOf": [{"$ref": "#/definitions/temporalInterval"}, {"type": "array", "items": {"$ref": "#/definitions/temporalInterval"}}]}}, "required": ["name", "description", "measurementTechnique", "creator", "distribution", "funding", "identifier"], "recommended": ["citation", "license", "species", "infectiousAgent", "healthCondition", "spatialCoverage", "temporalCoverage"], "optional": ["sdPublisher"], "definitions": {"person": {"description": "Reusable person definition", "@type": "Person", "type": "object", "properties": {"name": {"type": "string"}}, "required": ["name"]}, "organization": {"description": "Reusable organization definition", "@type": "Organization", "type": "object", "properties": {"name": {"type": "string"}}, "required": ["name"]}, "controlledVocabulary": {"description": "collection of vocabulary terms defined in ontologies", "@type": "CreativeWork", "type": "string", "vocabulary": {"ontology": ["edam", "ncit"], "children_of": ["http://edamontology.org/topic_3361", "http://purl.obolibrary.org/obo/NCIT_C20368"]}, "strict": false}, "pathogenControlledVocabulary": {"description": "collection of vocabulary terms defined in ontologies", "@type": "CreativeWork", "type": "string", "vocabulary": {"ontology": ["ncbitaxon"], "children_of": ["http://purl.obolibrary.org/obo/NCBITaxon_10239", "http://purl.obolibrary.org/obo/NCBITaxon_2"]}, "strict": false}, "speciesControlledVocabulary": {"description": "collection of vocabulary terms defined in ontologies", "@type": "CreativeWork", "type": "string", "vocabulary": {"ontology": ["ncbitaxon"], "children_of": ["http://purl.obolibrary.org/obo/NCBITaxon_131567", "http://purl.obolibrary.org/obo/NCBITaxon_10239"]}, "strict": false}, "diseaseControlledVocabulary": {"description": "collection of vocabulary terms defined in ontologies", "@type": "CreativeWork", "type": "string", "vocabulary": {"ontology": ["mondo"], "children_of": ["http://purl.obolibrary.org/obo/MONDO_0000001"]}, "strict": false}, "monetaryGrant": {"type": "object", "@type": "MonetaryGrant", "description": "Funding that supports (sponsors) the collection of this dataset through some kind of financial contribution", "properties": {"funder": {"description": "An organization associated with a creator or funder of a dataset", "oneOf": [{"$ref": "#/definitions/funder"}, {"type": "array", "items": {"$ref": "#/definitions/funder"}}]}, "description": {"type": "string", "description": "description about the funding award / grant"}, "url": {"type": "string", "description": "award / grant URL"}, "identifier": {"type": "string", "description": "Unique identifier(s) for the grant(s) used to fund the Dataset"}}, "required": ["funder", "identifier"]}, "funder": {"type": "object", "@type": "Organization", "description": "Information about a single funder", "properties": {"name": {"type": "string", "description": "An organization associated with a creator or funder of a dataset"}, "parentOrganization": {"type": "string", "description": "name of the parent funding organization"}}, "required": ["name"]}, "dataDownload": {"description": "A dataset in downloadable form.", "@type": "DataDownload", "type": "object", "properties": {"dateModified": {"type": "string", "format": "date"}, "contentUrl": {"type": "string", "format": "uri"}}, "required": ["dateModified", "contentUrl"]}, "article": {"description": "A scholarly article in which the dataset is cited.", "@type": "ScholarlyArticle", "type": "object", "properties": {"name": {"type": "string"}, "url": {"type": "string", "format": "uri"}}, "required": ["url"]}, "place": {"description": "Location information", "@type": "AdministrativeArea", "type": "object", "properties": {"locationType": {"description": "Categorization of how the location relates to the dataset or computational tool", "oneOf": [{"type": "string", "enum": ["residence", "exposure", "collection", "screening", "treatment", "study location", "other", "unknown"]}, {"type": "array", "items": {"type": "string", "enum": ["residence", "exposure", "collection", "screening", "treatment", "study location", "other", "unknown"]}}]}, "administrativeType": {"description": "the type of administrative area", "type": "string", "enum": ["province", "district", "chiefdom", "village", "city", "country", "prefecture", "sub-prefecture", "clan", "Federal Capital Territory", "state", "Local Government Area", "ward"]}, "alternateName": {"description": "An alias for the location.", "oneOf": [{"type": "string"}, {"type": "array", "items": {"type": "string"}}]}, "identifier": {"description": "An identifier for the location, preferably a Wikidata ID.", "type": "string"}, "name": {"description": "The name of the item.", "type": "string"}}}, "temporalInterval": {"description": "Temporal information", "@type": "TemporalInterval", "type": "object", "properties": {"temporalType": {"description": "Categorization of how the date/temporal interval relates to the dataset or computational tool", "oneOf": [{"type": "string", "enum": ["exposure", "collection", "screening", "treatment", "study date", "other", "unknown"]}, {"type": "array", "items": {"type": "string", "enum": ["exposure", "collection", "screening", "treatment", "study date", "other", "unknown"]}}]}, "startDate": {"description": "A start date. ", "type": "string", "format": "date"}, "name": {"description": "String describing the temporal interval", "type": "string"}, "endDate": {"description": "An end date.", "type": "string", "format": "date"}, "duration": {"description": "A time interval in ISO 8601 duration format.", "type": "string"}}}}}}]}