10.5281/zenodo.7450788
https://zenodo.org/records/7450788
oai:zenodo.org:7450788
Luna L. Sanchez Reyes
Luna L. Sanchez Reyes
University of California, Merced
Brian O'Meara
Brian O'Meara
Peter E. Midford
Peter E. Midford
Scott Chamberlain
Scott Chamberlain
@decktools
Joseph W. Brown
Joseph W. Brown
Royal Ontario Museum
Emily Jane McTavish
Emily Jane McTavish
Katrin Leinweber
Katrin Leinweber
@gitlabhq
Klaus Schliep
Klaus Schliep
Graz University of Technology
phylotastic/datelife: datelife v0.6.6
Zenodo
2022
2022-12-17
https://github.com/phylotastic/datelife/tree/v0.6.6
10.5281/zenodo.593938
v0.6.6
Other (Open)
datelife v0.6.6
when congruification fails, return NA and produce a warning on functions that use geiger::congruify.phylo():
congruify_and_mrca_phylo()
extract_calibrations_phylo()
congruify_and_check()
changes to congruify_and_mrca_multiPhylo():
filters out results of congruify_and_mrca_phylo() that do not inherit data.frame; usually this happens when congruification fails
correctly assigns congruified phy as attribute
use_calibrations_bladj.matchedCalibrations() correctly uses calibrations argument
get_ott_children() added error handling for when OpenTree APIs might be down, or there is no internet connection
varius fixes to make_datelife_query() et al. functions
added a new vignette for making datelife query functions (allows testing various functionalities)