Software Open Access

phylotastic/datelife: datelife v0.6.6

Luna L. Sanchez Reyes; Brian O'Meara; Peter E. Midford; Scott Chamberlain; Joseph W. Brown; Emily Jane McTavish; Katrin Leinweber; Klaus Schliep

datelife v0.6.6
  • when congruification fails, return NA and produce a warning on functions that use geiger::congruify.phylo():
    • congruify_and_mrca_phylo()
    • extract_calibrations_phylo()
    • congruify_and_check()
  • changes to congruify_and_mrca_multiPhylo():
    • filters out results of congruify_and_mrca_phylo() that do not inherit data.frame; usually this happens when congruification fails
    • correctly assigns congruified phy as attribute
  • use_calibrations_bladj.matchedCalibrations() correctly uses calibrations argument
  • get_ott_children() added error handling for when OpenTree APIs might be down, or there is no internet connection
  • varius fixes to make_datelife_query() et al. functions
  • added a new vignette for making datelife query functions (allows testing various functionalities)
Files (14.1 MB)
Name Size
14.1 MB Download
All versions This version
Views 52630
Downloads 231
Data volume 123.4 MB14.1 MB
Unique views 41925
Unique downloads 211


Cite as