Published December 16, 2022
| Version v1
Dataset
Open
Datasets accompanying scANANSE
Description
The preprocessed Seurat object and the two Scanpy objects that can be used to run the scANANSE pipeline with.
Seurat object: preprocessed_PBMC.Rds
Scanpy objects: rna_PBMC.h5ad, atac_PBMC.h5ad
Additional raw data, used to construct the preprocessed objects, supplemented from:
https://cf.10xgenomics.com/samples/cell-arc/1.0.0/pbmc_granulocyte_sorted_10k/pbmc_granulocyte_sorted_10k_filtered_feature_bc_matrix.h5, https://cf.10xgenomics.com/samples/cell-arc/1.0.0/pbmc_granulocyte_sorted_10k/pbmc_granulocyte_sorted_10k_atac_fragments.tsv.gz, https://cf.10xgenomics.com/samples/cell-arc/1.0.0/pbmc_granulocyte_sorted_10k/pbmc_granulocyte_sorted_10k_atac_fragments.tsv.gz.tbi,
https://atlas.fredhutch.org/data/nygc/multimodal/pbmc_multimodal.h5seurat
Files
Files
(7.6 GB)
| Name | Size | Download all |
|---|---|---|
|
md5:bd3ba6fa37b2c26659f6bc3bed917467
|
979.9 MB | Download |
|
md5:a959ef83dfb9cae6ff73ab0147d547d1
|
2.1 GB | Download |
|
md5:df967acbe28da89aed9cfdd89370b7af
|
1.0 MB | Download |
|
md5:920b16bf1e63b6610bf74bf9040ed386
|
162.3 MB | Download |
|
md5:82421ea2c16fe30fba15559efbcf9094
|
2.2 GB | Download |
|
md5:09a3f3ec2f7b90916b978fc31ca46218
|
2.1 GB | Download |
|
md5:cb6407314a4443dac1ee5ffcc960c962
|
109.2 MB | Download |