February 2, 2021 Software Open Access

Baron, Corey A; Dubovan, Paul I

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    "description": "<p>MatMRI is a package for MRI image reconstruction using only core or toolbox MATLAB<sup>&reg;</sup> functions (i.e., no mex files or pre-compiled binaries). This philosophy is used to enable easy integration with built-in MATLAB<sup>&reg;</sup> GPU functionality, and to minimize dependencies. It currently supports:</p>\n\n<ul>\n\t<li>non-Cartesian&nbsp;regridding</li>\n\t<li>iterative&nbsp;SENSE&nbsp;(Cartesian&nbsp;or&nbsp;non-Cartesian)</li>\n\t<li>iterative&nbsp;SENSE&nbsp;for&nbsp;higher&nbsp;order&nbsp;models&nbsp;that&nbsp;may&nbsp;include:\n\t<ul>\n\t\t<li>an off-resonance map</li>\n\t\t<li>time&nbsp;varying&nbsp;spherical&nbsp;harmonics&nbsp;of&nbsp;phase&nbsp;accrual</li>\n\t</ul>\n\t</li>\n\t<li>compressed sensing for higher order models</li>\n\t<li>spherical harmonic estimation using raw field probe data</li>\n</ul>\n\n<p>Also see&nbsp;https://gitlab.com/cfmm/matlab/matmri</p>\n\n<p>Related publications:</p>\n\n<p>Dubovan PI, Baron CA. Model-based determination of the synchronization delay between MRI and trajectory data. Magn Reson Med. 2022 Sep 26. doi:10.1002/mrm.29460. PMID: 36161333.</p>\n\n<p>Baron CA, Dwork N, Pauly JM, Nishimura DG. Rapid compressed sensing reconstruction of 3D non-Cartesian MRI. Magn. Reson. Med. 2018;79:2685&ndash;2692.</p>\n\n<p>Wilm BJ, Barmet C, Pruessmann KP. Fast higher-order MR image reconstruction using singular-vector separation. IEEE Trans Med Imaging. 2012 Jul;31(7):1396-403. doi: 10.1109/TMI.2012.2190991. Epub 2012 Mar 14. Erratum in: IEEE Trans Med Imaging. 2012 Sep;31(9):1833.</p>", 
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    "title": "MatMRI: A GPU enabled package for model based MRI image reconstruction", 
    "notes": "Natural Sciences and Engineering Research Council of Canada (NSERC), RGPIN-2018-05448", 
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      "Baron CA, Dwork N, Pauly JM, Nishimura DG. Rapid compressed sensing reconstruction of 3D non-Cartesian MRI. Magn. Reson. Med. 2018;79:2685\u20132692", 
      "Wilm BJ, Barmet C, Pruessmann KP. Fast higher-order MR image reconstruction using singular-vector separation. IEEE Trans Med Imaging. 2012 Jul;31(7):1396-403. doi: 10.1109/TMI.2012.2190991. Epub 2012 Mar 14. Erratum in: IEEE Trans Med Imaging. 2012 Sep;31(9):1833"
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    "keywords": [
      "MRI", 
      "Model based reconstruction", 
      "Magnetic resonance imaging"
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    "publication_date": "2021-02-02", 
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        "orcid": "0000-0001-7343-5580", 
        "affiliation": "University of Western Ontario", 
        "name": "Baron, Corey A"
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        "affiliation": "University of Western Ontario", 
        "name": "Dubovan, Paul I"
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