Software Open Access
ModularImageAnalysis (MIA)
Cross, Stephen John
- Added headless mode to allow workflows to be run without the need for opening a graphical instance of Fiji. This enables running MIA on terminal-only systems such as compute clusters. For more information see the guide at https://mianalysis.github.io/mia/guides/runningheadless.html
- The "MIA (headless)" menu option can also be used to run existing workflows with a minimal graphical interface and provides a method for launching workflows from ImageJ macros
- Added modules to load and save objects to ImageJ .roi and .zip (zipped ROI) files
- Included StarDistDetection module from mia-deeplearning repository. This module will only appear if StarDist update site is enabled
- Projection axis cannow be specified in ProjectImage. This module also switched to primarily using ImgLib2. ProjectImage also outputs average projections as 32-bit
- Updated handling of modules with incompatible dependencies. Now such modules aren't flagged at launch of MIA; instead, inactive modules are listed in both "Unavailable modules" section of "Add module" menu and via "Help > Unavailable modules" menu. Missing modules are still flagged when loading workflows that call for them
- Minor website formatting updates and removal of "html" from URLs
- Added many "MethodSource" tests for image processing modules. These are needed in the transition of these modules to ImgLib2
- General bugfixes
Files
(84.6 MB)
| Name | Size | |
|---|---|---|
|
mianalysis/mia-v1.2.0.zip
md5:5815c279d3b8a0d66c72a350af75794f |
84.6 MB | Download |
3,436
6,254
views
downloads
| All versions | This version | |
|---|---|---|
| Views | 3,436 | 15 |
| Downloads | 6,254 | 0 |
| Data volume | 112.1 GB | 0 Bytes |
| Unique views | 2,864 | 13 |
| Unique downloads | 384 | 0 |
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- Publication date:
- November 9, 2022
- DOI:
-
- Keyword(s):
- ImageJ Fiji ImageAnalysis BioImageAnalysis
- Related identifiers:
- Supplement to
- License (for files):
- Other (Open)