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immunomind/immunarch: Immunarch 0.8.0

Maria Samokhina; ivan-immunomind; Aleksandr Popov; Vadim I. Nazarov; immunarch.bot; Eugene Rumynskiy; gracecodeadventures; tsvvas; Maksym Zarodniuk

BCR pipeline now requires less columns in the input data: only nucleotide sequences of FR1-4 and CDR1-3 regions are needed Bugfixes and performance improvements in BCR pipeline Removed arguments .align_j_gene from repGermline() and .verbose_output from repAlignLineage() that are not needed anymore seqDist() and seqCluster() now support auto-trimming of extra information from gene columns for proper cluster naming New .trim_genes argument for seqDist() that allows to disable auto-trimming (useful if used columns are not ones with genes) Improved clustering in seqCluster() Removed some false warning that appeared on vis() calls

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Publication date:
October 18, 2022
DOI:
10.5281/zenodo.7221366

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10.5281/zenodo.7221366

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Versions

Version 0.9.0 10.5281/zenodo.7446955 Dec 16, 2022
Version 0.8.0 10.5281/zenodo.7221366 Oct 18, 2022
Version 0.7.0 10.5281/zenodo.6984421 Aug 11, 2022
Version 0.6.9 10.5281/zenodo.6599744 May 31, 2022
Version 0.6.8 10.5281/zenodo.6524612 May 6, 2022
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