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Published October 5, 2022 | Version v0.3.0
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SchlossLab/schtools: schtools 0.3.0

Description

  • New function log_snakemake() redirects all output to a rule-specific log file when called by a Snakemake rule (#35, @kelly-sovacool).
  • New function pool_taxon_counts() pools OTU counts at a particular taxonomic level (e.g. genus, phylum, etc.) to enable comparing analyses at different taxonomic resolutions, as seen in https://doi.org/10.1128/mbio.03161-21 (#37, @kelly-sovacool).
  • New function calc_relabun() calculates OTU relative abundances (#38, @kelly-sovacool).
  • New custom themes for ggplot2:
    • theme_sovacool() (#39, @kelly-sovacool)
    • theme_lucas() (#40, @sklucas)

Full Changelog: https://github.com/SchlossLab/schtools/compare/v0.2.1...v0.3.0

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SchlossLab/schtools-v0.3.0.zip

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