7129553
doi
10.5281/zenodo.7129553
oai:zenodo.org:7129553
user-bycovid
user-eu
Kleemola, Mari
CESSDA/TAU-FSD
Moilanen, Katja
CESSDA/TAU-FSD)
Tuominen, Markus
CESSDA/TAU-FSD
Sansone, Susanna-Assunta
UOXF
Lister, Allyson
UOXF
David, Romain
ERINHA
Panagiotopoulou, Maria
ECRIN
Ohmann, Christian
ECRIN
Belien, Jeroen
ELIXIR-NL/VUmc
Lischke, Julia
ELIXIR-NL/Lygature
Juty, Nick
ELIXIR-UK/UNIMAN
Soiland-Reyes, Stian
ELIXIR-UK/UNIMAN
BY-COVID D3.2: Implementation of cloud-based, high performance, scalable indexing system.
Hermjakob, Henning
EMBL-EBI
info:eu-repo/semantics/openAccess
Creative Commons Attribution 4.0 International
https://creativecommons.org/licenses/by/4.0/legalcode
BY-COVID
COVID
Scalable indexing system
Covid-19 portal
tools
workflows
documentation
training
COVID-19 Data Portal
<p>BY-COVID Work Package 3 is focused on services for the discovery and integration of COVID-19 data by delivering a flexible, tiered metadata discovery system across different domains, metadata standards, and maturity/robustness levels of data sources. This will enable the linking of FAIR data and metadata on SARS-CoV-2 and COVID-19, on other related viruses and diseases, and on socio-economic consequences, across research fields, from omics, clinical, and epidemiological research, to social sciences and humanities. </p>
<p>Building on the metadata format developed in D3.1, in a series of work package meetings and a workshop, with participation from all other work packages, we have developed tools (example <a href="https://docs.google.com/document/d/1LcNr8WRP_uVbuphswivLBUWbV1_GuStI6d3VKxI5Usk/edit#heading=h.qkh6g66kjy7p">Validator</a>), workflows (<a href="https://docs.google.com/document/d/1LcNr8WRP_uVbuphswivLBUWbV1_GuStI6d3VKxI5Usk/edit#heading=h.mgdk6yi6w5co">Semi-automated transfer of resource metadata from FAIRsharing to Covid-19 portal</a>), and documentation and training (<a href="https://docs.google.com/document/d/1LcNr8WRP_uVbuphswivLBUWbV1_GuStI6d3VKxI5Usk/edit#heading=h.5ao3wlejox0l">Training: Discoverability hackathon</a>) to support the efficient integration of additional resources from a broad range of domains into the COVID-19 Data Portal as well as improved the end user facing COVID-19 Data Portal itself (<a href="https://docs.google.com/document/d/1LcNr8WRP_uVbuphswivLBUWbV1_GuStI6d3VKxI5Usk/edit#heading=h.quqpi0uednmz">Global search</a>). </p>
<p>This work establishes the basis for the further development of the COVID-19 Data Portal metadata discovery, and provides a path for integration of metadata from multi-domain partners in BY-COVID, as well as our ISIDORe sibling project, and other relevant external resources. To ensure smooth integration of partner provided metadata, we anticipate re-running our “Discoverability hackathon” in the future and will continue to evolve our metadata format and presentation of the COVID-19 Data Portal. We anticipate significant development and metadata modelling work for the use-case driven support of complex data sources in close collaboration with WPs 2, 4 and 5. </p>
Zenodo
2022-09-30
info:eu-repo/semantics/report
7129552
user-bycovid
user-eu
award_title=Beyond COVID; award_number=101046203; award_identifiers_scheme=url; award_identifiers_identifier=https://cordis.europa.eu/projects/101046203; funder_id=00k4n6c32; funder_name=European Commission;
1696943789.093007
3462068
md5:cc2550092828105ddce6dd29e2b6d1ea
https://zenodo.org/records/7129553/files/BY-COVID_ D_3.2.pdf
public
10.5281/zenodo.7129552
isVersionOf
doi