10.5281/zenodo.7129553
https://zenodo.org/records/7129553
oai:zenodo.org:7129553
Hermjakob, Henning
Henning
Hermjakob
0000-0001-8479-0262
EMBL-EBI
Kleemola, Mari
Mari
Kleemola
0000-0001-8855-5075
CESSDA/TAU-FSD
Moilanen, Katja
Katja
Moilanen
0000-0002-7668-5427
CESSDA/TAU-FSD)
Tuominen, Markus
Markus
Tuominen
0000-0002-3092-1690
CESSDA/TAU-FSD
Sansone, Susanna-Assunta
Susanna-Assunta
Sansone
0000-0001-5306-5690
UOXF
Lister, Allyson
Allyson
Lister
0000-0002-7702-4495
UOXF
David, Romain
Romain
David
0000-0003-4073-7456
ERINHA
Panagiotopoulou, Maria
Maria
Panagiotopoulou
0000-0002-4221-7254
ECRIN
Ohmann, Christian
Christian
Ohmann
0000-0002-5919-1003
ECRIN
Belien, Jeroen
Jeroen
Belien
0000-0002-7160-5942
ELIXIR-NL/VUmc
Lischke, Julia
Julia
Lischke
0000-0002-5524-2838
ELIXIR-NL/Lygature
Juty, Nick
Nick
Juty
0000-0002-2036-8350
ELIXIR-UK/UNIMAN
Soiland-Reyes, Stian
Stian
Soiland-Reyes
0000-0001-9842-9718
ELIXIR-UK/UNIMAN
BY-COVID D3.2: Implementation of cloud-based, high performance, scalable indexing system.
Zenodo
2022
BY-COVID
COVID
Scalable indexing system
Covid-19 portal
tools
workflows
documentation
training
COVID-19 Data Portal
2022-09-30
Project deliverable
10.5281/zenodo.7129552
https://zenodo.org/communities/bycovid
https://zenodo.org/communities/eu
Creative Commons Attribution 4.0 International
BY-COVID Work Package 3 is focused on services for the discovery and integration of COVID-19 data by delivering a flexible, tiered metadata discovery system across different domains, metadata standards, and maturity/robustness levels of data sources. This will enable the linking of FAIR data and metadata on SARS-CoV-2 and COVID-19, on other related viruses and diseases, and on socio-economic consequences, across research fields, from omics, clinical, and epidemiological research, to social sciences and humanities.
Building on the metadata format developed in D3.1, in a series of work package meetings and a workshop, with participation from all other work packages, we have developed tools (example Validator), workflows (Semi-automated transfer of resource metadata from FAIRsharing to Covid-19 portal), and documentation and training (Training: Discoverability hackathon) to support the efficient integration of additional resources from a broad range of domains into the COVID-19 Data Portal as well as improved the end user facing COVID-19 Data Portal itself (Global search).
This work establishes the basis for the further development of the COVID-19 Data Portal metadata discovery, and provides a path for integration of metadata from multi-domain partners in BY-COVID, as well as our ISIDORe sibling project, and other relevant external resources. To ensure smooth integration of partner provided metadata, we anticipate re-running our “Discoverability hackathon” in the future and will continue to evolve our metadata format and presentation of the COVID-19 Data Portal. We anticipate significant development and metadata modelling work for the use-case driven support of complex data sources in close collaboration with WPs 2, 4 and 5.
European Commission
10.13039/501100000780
101046203
Beyond COVID