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BRANEnet: Embedding Multilayer Networks for Omics Data Integration

surabhi Jagtap; Aurélie Pirayre; Frédérique Bidard; Laurent Duval; Fragkiskos D. Malliaros


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    <subfield code="a">&lt;p&gt;BRANEnet is&amp;nbsp;&amp;nbsp;a novel multi-omics integration framework for multilayer heterogeneous networks. In particular, it embeds graph-based information from multi-omics data in a lower-dimensional space.&amp;nbsp; To capture relevant context around each node of interest, it&amp;nbsp;leverages a properly chosen random walk-based Positive Pointwise Mutual Information (PPMI) matrix.&lt;/p&gt;

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